Wall clock time and date at job start Tue Mar 31 2020 19:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 N 1.46504 * 109.46539 * 179.97438 * 16 15 14 18 18 C 1.33874 * 122.76480 * 269.70288 * 17 16 15 19 19 O 1.21220 * 125.39481 * 359.97438 * 18 17 16 20 20 C 1.51317 * 109.20450 * 179.84672 * 18 17 16 21 21 C 1.54222 * 103.55556 * 0.38988 * 20 18 17 22 22 C 1.33877 * 122.75707 * 90.00240 * 17 16 15 23 23 O 1.21220 * 125.40370 * 359.97438 * 22 17 16 24 24 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 25 25 F 1.39903 * 109.47440 * 60.00123 * 24 9 7 26 26 F 1.39899 * 109.47255 * 180.02562 * 24 9 7 27 27 F 1.39900 * 109.47102 * 299.99874 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 30 30 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 31 31 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 32 32 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 33 33 H 1.08996 * 109.47132 * 299.99032 * 16 15 14 34 34 H 1.09000 * 109.47229 * 59.99831 * 16 15 14 35 35 H 1.09006 * 110.79504 * 241.78193 * 20 18 17 36 36 H 1.09003 * 110.54736 * 118.88553 * 20 18 17 37 37 H 1.09006 * 110.60622 * 241.25799 * 21 20 18 38 38 H 1.09005 * 110.60759 * 118.29716 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 7 3.0867 -9.4234 -1.4478 18 6 2.5334 -10.3795 -0.6914 19 8 2.3002 -10.2893 0.4947 20 6 2.2425 -11.5893 -1.5524 21 6 2.7380 -11.1658 -2.9501 22 6 3.2516 -9.7591 -2.7332 23 8 3.7352 -9.0487 -3.5881 24 6 0.3719 -2.5805 1.2490 25 9 -0.5373 -1.5171 1.2496 26 9 -0.3272 -3.7922 1.2493 27 9 1.1766 -2.5067 2.3910 28 1 -0.4850 0.8401 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 3.6064 -5.7108 -0.1383 31 1 1.4635 -7.5216 -0.4654 32 1 2.0364 -7.0326 -2.0782 33 1 4.3356 -7.7385 -1.4764 34 1 3.7634 -8.2276 0.1366 35 1 1.1736 -11.8021 -1.5725 36 1 2.7983 -12.4561 -1.1946 37 1 1.9156 -11.1679 -3.6656 38 1 3.5422 -11.8202 -3.2867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627546430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:29 Heat of formation + Delta-G solvation = -224.327573 kcal Electronic energy + Delta-G solvation = -29706.010826 eV Core-core repulsion = 24748.995110 eV Total energy + Delta-G solvation = -4957.015715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.29586 -45.94668 -45.56706 -42.24168 -39.36502 -38.91971 -36.34843 -35.56619 -34.49629 -33.31695 -32.49263 -29.45997 -27.70660 -26.60073 -24.54865 -23.66641 -22.77817 -21.56143 -20.40931 -19.77275 -18.44246 -17.64693 -17.28992 -16.84734 -16.82540 -16.72003 -16.55403 -16.07577 -15.40216 -15.18362 -14.85510 -14.68563 -14.58499 -14.35159 -14.30734 -13.77934 -13.68193 -13.28373 -13.14199 -12.86009 -12.52347 -12.43882 -12.34571 -12.23945 -11.93780 -11.86692 -11.78663 -11.72792 -11.15472 -11.03475 -10.85682 -10.77308 -10.41236 -10.38896 -10.17988 -9.66445 -9.58543 -8.88506 -8.69753 -8.17313 -6.21799 -4.45843 1.13088 2.00295 2.31098 3.18405 3.21414 3.26226 3.29514 3.63068 3.76123 3.77592 3.96033 4.20470 4.35271 4.59372 4.60515 4.64437 4.80097 4.95431 4.97521 5.03630 5.07499 5.10388 5.17044 5.62675 5.80032 5.88764 5.92204 6.25326 6.42391 6.65888 6.83854 6.92371 7.20222 7.35734 7.37724 7.63030 7.67711 8.50162 8.63866 9.14075 9.24935 10.69839 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002623 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.695554 B =10671.451724 C =11299.978221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.725 5.725 12 C 0.701 3.299 13 O -0.582 6.582 14 N -0.750 5.750 15 C 0.131 3.869 16 C 0.088 3.912 17 N -0.571 5.571 18 C 0.525 3.475 19 O -0.475 6.475 20 C -0.156 4.156 21 C -0.156 4.156 22 C 0.525 3.475 23 O -0.475 6.475 24 C 0.415 3.585 25 F -0.137 7.137 26 F -0.217 7.217 27 F -0.210 7.210 28 H 0.269 0.731 29 H 0.395 0.605 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -20.944 -3.447 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.157 3.843 10 H 0.103 0.897 11 N -0.377 5.377 12 C 0.401 3.599 13 O -0.459 6.459 14 N -0.409 5.409 15 C 0.005 3.995 16 C -0.034 4.034 17 N -0.315 5.315 18 C 0.313 3.687 19 O -0.345 6.345 20 C -0.196 4.196 21 C -0.196 4.196 22 C 0.314 3.686 23 O -0.346 6.346 24 C 0.359 3.641 25 F -0.119 7.119 26 F -0.199 7.199 27 F -0.192 7.192 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.228 0.772 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.774 -20.480 -3.660 21.880 hybrid contribution 1.074 0.997 0.715 1.631 sum 7.848 -19.483 -2.944 21.209 Atomic orbital electron populations 1.70398 1.05853 1.27472 1.43541 1.25083 0.95160 1.00086 0.94074 0.86261 0.79317 0.81306 0.78875 1.20874 1.19843 1.19801 1.20841 0.93764 0.88104 1.56287 0.90515 1.19604 0.88243 0.84873 0.91617 0.89705 1.45243 1.17443 1.09585 1.65449 1.15988 0.84236 0.80444 0.79257 1.90924 1.19590 1.82839 1.52510 1.44810 1.16502 1.10317 1.69223 1.21240 0.96267 0.81917 1.00120 1.21907 0.98561 0.81202 1.01739 1.46640 1.56543 1.16209 1.12122 1.20891 0.75235 0.85176 0.87363 1.90824 1.48781 1.81102 1.13821 1.22479 1.06025 0.97574 0.93532 1.22484 1.04532 0.93773 0.98810 1.20892 0.76932 0.89817 0.81002 1.90820 1.40707 1.57388 1.45675 1.23179 0.80920 0.72807 0.87195 1.93401 1.68420 1.53826 1.96209 1.93074 1.81476 1.48334 1.96967 1.92983 1.74419 1.96194 1.55613 0.92053 0.77174 0.77240 0.91230 0.91229 0.88061 0.88076 0.85890 0.86093 0.85910 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.27 9.50 55.43 0.53 -22.74 16 2 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -14.23 8.46 -34.44 -0.29 -14.52 16 8 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 9 C 0.26 6.66 2.21 -69.09 -0.15 6.51 16 10 H 0.09 2.42 7.58 -51.93 -0.39 2.02 16 11 N -0.72 -15.08 4.99 -59.82 -0.30 -15.38 16 12 C 0.70 14.38 8.10 -86.92 -0.70 13.68 16 13 O -0.58 -14.44 14.92 5.29 0.08 -14.36 16 14 N -0.75 -11.15 5.56 -65.22 -0.36 -11.52 16 15 C 0.13 1.76 6.00 -4.04 -0.02 1.74 16 16 C 0.09 0.85 5.67 -4.04 -0.02 0.83 16 17 N -0.57 -5.06 2.55 -115.34 -0.29 -5.36 16 18 C 0.52 4.44 8.08 -11.09 -0.09 4.35 16 19 O -0.47 -5.88 17.47 5.61 0.10 -5.78 16 20 C -0.16 -0.54 7.03 -26.94 -0.19 -0.73 16 21 C -0.16 -0.53 7.03 -26.94 -0.19 -0.72 16 22 C 0.52 4.39 8.08 -11.08 -0.09 4.30 16 23 O -0.48 -5.79 17.48 5.61 0.10 -5.69 16 24 C 0.42 10.92 2.81 37.16 0.10 11.02 16 25 F -0.14 -3.87 12.91 2.25 0.03 -3.85 16 26 F -0.22 -5.72 15.67 2.25 0.04 -5.68 16 27 F -0.21 -5.29 16.94 2.25 0.04 -5.26 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 6.95 8.55 -40.82 -0.35 6.60 16 30 H 0.39 4.43 8.49 -40.82 -0.35 4.09 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 0.90 7.83 -51.93 -0.41 0.49 16 34 H 0.10 0.91 7.82 -51.93 -0.41 0.51 16 35 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -36.13 342.68 -5.63 -41.76 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -3.98 Total: 5.41 kcal Atomic # 6 Polarization: 29.82 SS G_CDS: -1.74 Total: 28.08 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.43 Total: -54.99 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: 0.27 Total: -25.83 kcal Atomic # 9 Polarization: -14.89 SS G_CDS: 0.10 Total: -14.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.13 -5.63 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627546430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.565 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds