Wall clock time and date at job start Tue Mar 31 2020 19:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 N 1.46504 * 109.46539 * 179.97438 * 16 15 14 18 18 C 1.33874 * 122.76480 * 269.70288 * 17 16 15 19 19 O 1.21220 * 125.39481 * 359.97438 * 18 17 16 20 20 C 1.51317 * 109.20450 * 179.84672 * 18 17 16 21 21 C 1.54222 * 103.55556 * 0.38988 * 20 18 17 22 22 C 1.33877 * 122.75707 * 90.00240 * 17 16 15 23 23 O 1.21220 * 125.40370 * 359.97438 * 22 17 16 24 24 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 25 25 F 1.39903 * 109.47440 * 60.00123 * 24 9 7 26 26 F 1.39899 * 109.47255 * 180.02562 * 24 9 7 27 27 F 1.39900 * 109.47102 * 299.99874 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 30 30 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 31 31 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 32 32 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 33 33 H 1.08996 * 109.47132 * 299.99032 * 16 15 14 34 34 H 1.09000 * 109.47229 * 59.99831 * 16 15 14 35 35 H 1.09006 * 110.79504 * 241.78193 * 20 18 17 36 36 H 1.09003 * 110.54736 * 118.88553 * 20 18 17 37 37 H 1.09006 * 110.60622 * 241.25799 * 21 20 18 38 38 H 1.09005 * 110.60759 * 118.29716 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 7 3.0867 -9.4234 -1.4478 18 6 2.5334 -10.3795 -0.6914 19 8 2.3002 -10.2893 0.4947 20 6 2.2425 -11.5893 -1.5524 21 6 2.7380 -11.1658 -2.9501 22 6 3.2516 -9.7591 -2.7332 23 8 3.7352 -9.0487 -3.5881 24 6 0.3719 -2.5805 1.2490 25 9 -0.5373 -1.5171 1.2496 26 9 -0.3272 -3.7922 1.2493 27 9 1.1766 -2.5067 2.3910 28 1 -0.4850 0.8401 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 3.6064 -5.7108 -0.1383 31 1 1.4635 -7.5216 -0.4654 32 1 2.0364 -7.0326 -2.0782 33 1 4.3356 -7.7385 -1.4764 34 1 3.7634 -8.2276 0.1366 35 1 1.1736 -11.8021 -1.5725 36 1 2.7983 -12.4561 -1.1946 37 1 1.9156 -11.1679 -3.6656 38 1 3.5422 -11.8202 -3.2867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627546430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:28 Heat of formation + Delta-G solvation = -252.535554 kcal Electronic energy + Delta-G solvation = -29707.234016 eV Core-core repulsion = 24748.995110 eV Total energy + Delta-G solvation = -4958.238905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.42366 -48.05777 -47.73436 -42.89372 -41.01134 -39.67429 -37.31456 -36.76422 -36.14957 -34.58767 -34.00770 -30.86206 -29.18008 -27.09838 -26.59466 -24.81533 -23.38490 -23.31519 -22.04379 -20.71047 -19.94147 -18.91926 -18.83782 -18.61766 -18.35634 -18.06140 -17.61485 -17.52925 -16.98677 -16.53845 -16.46565 -15.74087 -15.48937 -15.30924 -15.19407 -15.04405 -14.95283 -14.85133 -14.58995 -14.53401 -14.46123 -14.29910 -14.03472 -13.88655 -13.53993 -13.43656 -13.08052 -12.86075 -12.69169 -12.59611 -12.22737 -12.07960 -11.73812 -11.61229 -11.39739 -11.10287 -10.99046 -10.68710 -10.44038 -9.89239 -8.21580 -6.52967 0.49054 1.20578 1.47073 1.49545 1.58003 1.68902 1.84915 2.05570 2.37007 2.54122 2.93808 3.21330 3.24057 3.30995 3.59874 3.64993 3.77504 3.79413 3.86698 4.15563 4.18269 4.21712 4.29601 4.52642 4.67988 4.80838 4.87324 4.93241 4.96484 5.31493 5.39212 5.49904 5.63963 5.77823 6.03423 6.30217 6.52028 6.70889 7.09230 7.18088 7.55712 8.71236 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002623 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.695554 B =10671.451724 C =11299.978221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.285 1.285 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.563 4.563 8 H 0.094 0.906 9 C 0.271 3.729 10 H 0.046 0.954 11 N -0.717 5.717 12 C 0.697 3.303 13 O -0.629 6.629 14 N -0.727 5.727 15 C 0.136 3.864 16 C 0.094 3.906 17 N -0.578 5.578 18 C 0.518 3.482 19 O -0.521 6.521 20 C -0.141 4.141 21 C -0.141 4.141 22 C 0.519 3.481 23 O -0.520 6.520 24 C 0.412 3.588 25 F -0.150 7.150 26 F -0.220 7.220 27 F -0.203 7.203 28 H 0.269 0.731 29 H 0.412 0.588 30 H 0.415 0.585 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -22.448 -3.740 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.600 4.600 8 H 0.112 0.888 9 C 0.163 3.837 10 H 0.064 0.936 11 N -0.371 5.371 12 C 0.396 3.604 13 O -0.509 6.509 14 N -0.385 5.385 15 C 0.010 3.990 16 C -0.028 4.028 17 N -0.321 5.321 18 C 0.310 3.690 19 O -0.395 6.395 20 C -0.180 4.180 21 C -0.180 4.180 22 C 0.311 3.689 23 O -0.394 6.394 24 C 0.355 3.645 25 F -0.131 7.131 26 F -0.202 7.202 27 F -0.185 7.185 28 H 0.079 0.921 29 H 0.249 0.751 30 H 0.253 0.747 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.806 -22.049 -3.946 24.068 hybrid contribution 0.445 1.396 0.807 1.673 sum 9.251 -20.653 -3.139 22.847 Atomic orbital electron populations 1.70534 1.07548 1.28288 1.44535 1.26029 0.95915 1.03755 0.93411 0.85178 0.77963 0.76595 0.79385 1.21002 1.18949 1.18681 1.21204 0.94628 0.88181 1.55952 0.88791 1.19194 0.88404 0.86524 0.89596 0.93633 1.44955 1.17539 1.08888 1.65704 1.16190 0.84257 0.81092 0.78834 1.90891 1.21940 1.83647 1.54425 1.44560 1.16567 1.09466 1.67951 1.21243 0.97494 0.81760 0.98496 1.21763 0.96967 0.81360 1.02750 1.46888 1.56562 1.15780 1.12849 1.21845 0.73749 0.86284 0.87117 1.90802 1.50670 1.82078 1.15966 1.22610 1.07647 0.95769 0.91973 1.22616 1.05852 0.90278 0.99210 1.21834 0.75683 0.91455 0.79973 1.90799 1.42847 1.59112 1.46639 1.23370 0.80899 0.72333 0.87856 1.93375 1.68971 1.54475 1.96320 1.93063 1.81648 1.48479 1.97021 1.92982 1.74095 1.96149 1.55231 0.92110 0.75128 0.74747 0.93222 0.92865 0.86934 0.87158 0.83993 0.83072 0.83981 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.22 9.50 21.45 0.20 -49.02 16 2 C 0.01 0.74 5.20 84.66 0.44 1.18 16 3 Si 0.99 40.79 29.54 68.60 2.03 42.81 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.56 -28.77 8.46 25.60 0.22 -28.55 16 8 H 0.09 4.37 7.74 -2.91 -0.02 4.35 16 9 C 0.27 13.96 2.21 44.24 0.10 14.06 16 10 H 0.05 2.72 7.58 -2.39 -0.02 2.70 16 11 N -0.72 -29.87 4.99 -461.42 -2.30 -32.17 16 12 C 0.70 29.02 8.10 179.05 1.45 30.47 16 13 O -0.63 -32.35 14.92 -3.98 -0.06 -32.41 16 14 N -0.73 -21.50 5.56 -478.52 -2.66 -24.16 16 15 C 0.14 3.74 6.00 86.38 0.52 4.26 16 16 C 0.09 1.79 5.67 86.38 0.49 2.28 16 17 N -0.58 -9.70 2.55 -756.67 -1.93 -11.63 16 18 C 0.52 8.06 8.08 87.99 0.71 8.77 16 19 O -0.52 -12.73 17.47 -2.84 -0.05 -12.78 16 20 C -0.14 -0.47 7.03 30.46 0.21 -0.26 16 21 C -0.14 -0.45 7.03 30.46 0.21 -0.24 16 22 C 0.52 7.92 8.08 87.99 0.71 8.63 16 23 O -0.52 -12.40 17.48 -2.85 -0.05 -12.45 16 24 C 0.41 22.02 2.81 71.98 0.20 22.23 16 25 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 26 F -0.22 -11.91 15.67 44.97 0.70 -11.20 16 27 F -0.20 -10.17 16.94 44.97 0.76 -9.41 16 28 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.41 14.05 8.55 -92.70 -0.79 13.25 16 30 H 0.42 8.81 8.49 -92.71 -0.79 8.02 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 1.90 7.83 -2.39 -0.02 1.88 16 34 H 0.11 1.91 7.82 -2.39 -0.02 1.89 16 35 H 0.14 0.06 8.14 -2.38 -0.02 0.05 16 36 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.14 0.04 8.14 -2.38 -0.02 0.02 16 38 H 0.15 -0.32 8.14 -2.38 -0.02 -0.34 16 Total: -1.00 -81.98 342.68 2.06 -79.91 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.42 Total: 17.76 kcal Atomic # 6 Polarization: 57.57 SS G_CDS: 5.26 Total: 62.84 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -6.69 Total: -116.98 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -0.16 Total: -57.64 kcal Atomic # 9 Polarization: -30.75 SS G_CDS: 2.05 Total: -28.70 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -81.98 2.06 -79.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627546430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.624 kcal (2) G-P(sol) polarization free energy of solvation -81.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds