Wall clock time and date at job start Tue Mar 31 2020 19:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99700 * 2 1 4 4 H 1.48503 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47180 * 299.99577 * 3 2 1 6 6 H 1.48505 * 109.47236 * 60.00042 * 3 2 1 7 7 C 1.37878 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00367 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47186 * 299.99798 * 9 7 2 11 11 N 1.46500 * 109.47568 * 179.97438 * 9 7 2 12 12 C 1.34773 * 120.00431 * 155.00128 * 11 9 7 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 9 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 12 17 17 N 1.46495 * 109.46738 * 180.02562 * 16 15 14 18 18 C 1.33878 * 122.76000 * 269.70308 * 17 16 15 19 19 O 1.21226 * 125.39625 * 359.97438 * 18 17 16 20 20 C 1.51313 * 109.20743 * 179.84507 * 18 17 16 21 21 C 1.54229 * 103.55405 * 0.38996 * 20 18 17 22 22 C 1.33879 * 122.76351 * 90.00021 * 17 16 15 23 23 O 1.21223 * 125.39666 * 359.97438 * 22 17 16 24 24 C 1.53008 * 109.47321 * 59.99706 * 9 7 2 25 25 F 1.39902 * 109.47361 * 180.02562 * 24 9 7 26 26 F 1.39904 * 109.46506 * 300.00214 * 24 9 7 27 27 F 1.39897 * 109.46929 * 59.99967 * 24 9 7 28 28 H 0.97000 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99456 * 334.99690 * 11 9 7 30 30 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 31 31 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 32 32 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 33 33 H 1.09007 * 109.46621 * 299.99773 * 16 15 14 34 34 H 1.08997 * 109.46991 * 59.99522 * 16 15 14 35 35 H 1.08996 * 110.79940 * 241.78107 * 20 18 17 36 36 H 1.09000 * 110.55010 * 118.87488 * 20 18 17 37 37 H 1.09000 * 110.60803 * 241.25651 * 21 20 18 38 38 H 1.09004 * 110.60622 * 118.29181 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7168 -4.9703 0.9392 14 7 2.7111 -5.8382 0.4887 15 6 2.3112 -7.1439 1.0193 16 6 3.4793 -8.1242 0.8956 17 7 3.0792 -9.4300 1.4256 18 6 3.2495 -9.7743 2.7081 19 8 3.7411 -9.0713 3.5646 20 6 2.7282 -11.1789 2.9198 21 6 2.2309 -11.5947 1.5203 22 6 2.5183 -10.3792 0.6662 23 8 2.2784 -10.2804 -0.5180 24 6 0.3719 -2.5805 -1.2490 25 9 -0.3280 -3.7919 -1.2488 26 9 -0.5372 -1.5171 -1.2495 27 9 1.1766 -2.5066 -2.3910 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4865 -0.3545 30 1 3.6049 -5.7120 0.1336 31 1 2.0330 -7.0401 2.0681 32 1 1.4594 -7.5207 0.4532 33 1 3.7570 -8.2278 -0.1535 34 1 4.3313 -7.7474 1.4614 35 1 1.9063 -11.1830 3.6358 36 1 3.5295 -11.8382 3.2536 37 1 1.1617 -11.8056 1.5401 38 1 2.7868 -12.4591 1.1569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627546431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:33 Heat of formation + Delta-G solvation = -224.399459 kcal Electronic energy + Delta-G solvation = -29707.407312 eV Core-core repulsion = 24750.388479 eV Total energy + Delta-G solvation = -4957.018833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.29645 -45.94999 -45.56618 -42.24122 -39.36480 -38.91876 -36.34797 -35.56645 -34.49660 -33.31723 -32.49431 -29.46031 -27.70774 -26.60137 -24.55187 -23.66694 -22.77821 -21.56301 -20.40985 -19.77288 -18.44266 -17.64702 -17.29062 -16.84576 -16.82791 -16.72150 -16.55678 -16.07773 -15.40535 -15.18185 -14.85821 -14.68121 -14.58470 -14.34792 -14.31083 -13.77569 -13.68642 -13.28177 -13.14123 -12.86201 -12.52449 -12.43959 -12.34804 -12.24660 -11.94369 -11.86739 -11.78922 -11.72873 -11.16152 -11.03582 -10.85242 -10.76906 -10.41266 -10.38934 -10.17970 -9.63839 -9.58267 -8.88522 -8.70899 -8.17361 -6.22271 -4.46006 1.13049 2.00288 2.31054 3.17964 3.19592 3.26924 3.31092 3.63028 3.76079 3.77618 3.95972 4.20227 4.35278 4.59233 4.60499 4.64388 4.80020 4.95210 4.97518 5.03625 5.07510 5.10389 5.17046 5.62654 5.80011 5.88699 5.92161 6.25156 6.42361 6.65885 6.83802 6.92345 7.20160 7.35865 7.37755 7.62993 7.67528 8.50571 8.63854 9.14046 9.24877 10.69459 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.002623 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.684043 B =10670.609862 C =11299.151914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.725 5.725 12 C 0.701 3.299 13 O -0.582 6.582 14 N -0.750 5.750 15 C 0.131 3.869 16 C 0.088 3.912 17 N -0.571 5.571 18 C 0.525 3.475 19 O -0.475 6.475 20 C -0.156 4.156 21 C -0.156 4.156 22 C 0.524 3.476 23 O -0.475 6.475 24 C 0.415 3.585 25 F -0.217 7.217 26 F -0.137 7.137 27 F -0.210 7.210 28 H 0.268 0.732 29 H 0.395 0.605 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 -20.982 3.382 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.377 5.377 12 C 0.401 3.599 13 O -0.459 6.459 14 N -0.408 5.408 15 C 0.005 3.995 16 C -0.034 4.034 17 N -0.315 5.315 18 C 0.314 3.686 19 O -0.346 6.346 20 C -0.196 4.196 21 C -0.196 4.196 22 C 0.313 3.687 23 O -0.345 6.345 24 C 0.359 3.641 25 F -0.198 7.198 26 F -0.119 7.119 27 F -0.192 7.192 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.228 0.772 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.780 -20.521 3.596 21.909 hybrid contribution 1.053 1.004 -0.713 1.620 sum 7.833 -19.517 2.884 21.227 Atomic orbital electron populations 1.70418 1.05850 1.27247 1.43735 1.25086 0.95160 1.00113 0.94088 0.86148 0.79770 0.81963 0.77862 1.19425 1.20581 1.20573 1.20917 0.93827 0.88070 1.56039 0.90415 1.19618 0.88253 0.84911 0.91624 0.89700 1.45241 1.17451 1.09607 1.65417 1.15989 0.84231 0.80449 0.79261 1.90927 1.19553 1.82877 1.52514 1.44807 1.16558 1.10107 1.69374 1.21240 0.96271 0.81852 1.00178 1.21907 0.98560 0.81135 1.01811 1.46639 1.56269 1.16298 1.12306 1.20888 0.77025 0.89727 0.80987 1.90821 1.40570 1.57789 1.45422 1.22477 1.04486 0.93847 0.98796 1.22484 1.06012 0.97513 0.93588 1.20899 0.75256 0.85255 0.87274 1.90825 1.48759 1.81029 1.13904 1.23178 0.80924 0.72811 0.87184 1.93075 1.81431 1.48377 1.96964 1.93401 1.68416 1.53830 1.96205 1.92981 1.74415 1.96192 1.55615 0.92171 0.77171 0.77238 0.91227 0.91233 0.88087 0.88050 0.85891 0.86093 0.85908 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.24 9.50 55.43 0.53 -22.71 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -14.18 8.46 -34.44 -0.29 -14.47 16 8 H 0.08 1.88 7.74 -52.48 -0.41 1.48 16 9 C 0.26 6.64 2.21 -69.08 -0.15 6.48 16 10 H 0.09 2.42 7.58 -51.93 -0.39 2.02 16 11 N -0.72 -15.07 4.99 -59.81 -0.30 -15.37 16 12 C 0.70 14.38 8.10 -86.92 -0.70 13.67 16 13 O -0.58 -14.44 14.92 5.28 0.08 -14.36 16 14 N -0.75 -11.15 5.56 -65.22 -0.36 -11.51 16 15 C 0.13 1.76 6.00 -4.04 -0.02 1.74 16 16 C 0.09 0.85 5.67 -4.04 -0.02 0.83 16 17 N -0.57 -5.06 2.55 -115.34 -0.29 -5.36 16 18 C 0.52 4.39 8.08 -11.09 -0.09 4.30 16 19 O -0.48 -5.78 17.47 5.60 0.10 -5.69 16 20 C -0.16 -0.53 7.03 -26.94 -0.19 -0.72 16 21 C -0.16 -0.54 7.03 -26.94 -0.19 -0.73 16 22 C 0.52 4.44 8.08 -11.08 -0.09 4.35 16 23 O -0.47 -5.88 17.48 5.61 0.10 -5.78 16 24 C 0.42 10.91 2.81 37.16 0.10 11.02 16 25 F -0.22 -5.72 15.68 2.25 0.04 -5.68 16 26 F -0.14 -3.87 12.91 2.25 0.03 -3.85 16 27 F -0.21 -5.28 16.94 2.25 0.04 -5.25 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 6.95 8.55 -40.82 -0.35 6.60 16 30 H 0.39 4.43 8.49 -40.82 -0.35 4.09 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.91 7.83 -51.93 -0.41 0.50 16 34 H 0.10 0.90 7.82 -51.93 -0.41 0.49 16 35 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -36.15 342.68 -5.63 -41.78 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.98 Total: 5.34 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: -1.74 Total: 28.07 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.43 Total: -54.95 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.27 Total: -25.83 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 0.10 Total: -14.77 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.15 -5.63 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627546431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.620 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds