Wall clock time and date at job start Tue Mar 31 2020 19:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99700 * 2 1 4 4 H 1.48503 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47180 * 299.99577 * 3 2 1 6 6 H 1.48505 * 109.47236 * 60.00042 * 3 2 1 7 7 C 1.37878 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00367 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47186 * 299.99798 * 9 7 2 11 11 N 1.46500 * 109.47568 * 179.97438 * 9 7 2 12 12 C 1.34773 * 120.00431 * 155.00128 * 11 9 7 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 9 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 12 17 17 N 1.46495 * 109.46738 * 180.02562 * 16 15 14 18 18 C 1.33878 * 122.76000 * 269.70308 * 17 16 15 19 19 O 1.21226 * 125.39625 * 359.97438 * 18 17 16 20 20 C 1.51313 * 109.20743 * 179.84507 * 18 17 16 21 21 C 1.54229 * 103.55405 * 0.38996 * 20 18 17 22 22 C 1.33879 * 122.76351 * 90.00021 * 17 16 15 23 23 O 1.21223 * 125.39666 * 359.97438 * 22 17 16 24 24 C 1.53008 * 109.47321 * 59.99706 * 9 7 2 25 25 F 1.39902 * 109.47361 * 180.02562 * 24 9 7 26 26 F 1.39904 * 109.46506 * 300.00214 * 24 9 7 27 27 F 1.39897 * 109.46929 * 59.99967 * 24 9 7 28 28 H 0.97000 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99456 * 334.99690 * 11 9 7 30 30 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 31 31 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 32 32 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 33 33 H 1.09007 * 109.46621 * 299.99773 * 16 15 14 34 34 H 1.08997 * 109.46991 * 59.99522 * 16 15 14 35 35 H 1.08996 * 110.79940 * 241.78107 * 20 18 17 36 36 H 1.09000 * 110.55010 * 118.87488 * 20 18 17 37 37 H 1.09000 * 110.60803 * 241.25651 * 21 20 18 38 38 H 1.09004 * 110.60622 * 118.29181 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7168 -4.9703 0.9392 14 7 2.7111 -5.8382 0.4887 15 6 2.3112 -7.1439 1.0193 16 6 3.4793 -8.1242 0.8956 17 7 3.0792 -9.4300 1.4256 18 6 3.2495 -9.7743 2.7081 19 8 3.7411 -9.0713 3.5646 20 6 2.7282 -11.1789 2.9198 21 6 2.2309 -11.5947 1.5203 22 6 2.5183 -10.3792 0.6662 23 8 2.2784 -10.2804 -0.5180 24 6 0.3719 -2.5805 -1.2490 25 9 -0.3280 -3.7919 -1.2488 26 9 -0.5372 -1.5171 -1.2495 27 9 1.1766 -2.5066 -2.3910 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4865 -0.3545 30 1 3.6049 -5.7120 0.1336 31 1 2.0330 -7.0401 2.0681 32 1 1.4594 -7.5207 0.4532 33 1 3.7570 -8.2278 -0.1535 34 1 4.3313 -7.7474 1.4614 35 1 1.9063 -11.1830 3.6358 36 1 3.5295 -11.8382 3.2536 37 1 1.1617 -11.8056 1.5401 38 1 2.7868 -12.4591 1.1569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627546431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:32 Heat of formation + Delta-G solvation = -252.619267 kcal Electronic energy + Delta-G solvation = -29708.631014 eV Core-core repulsion = 24750.388479 eV Total energy + Delta-G solvation = -4958.242535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.42306 -48.05947 -47.73300 -42.89301 -41.01027 -39.67311 -37.31419 -36.76400 -36.14878 -34.58807 -34.00797 -30.86219 -29.18033 -27.09875 -26.59757 -24.81548 -23.38585 -23.31496 -22.04328 -20.71020 -19.94146 -18.91916 -18.83827 -18.61972 -18.35681 -18.06205 -17.61809 -17.52698 -16.99007 -16.53466 -16.46307 -15.73959 -15.49019 -15.30854 -15.19399 -15.04241 -14.95352 -14.85056 -14.58990 -14.53401 -14.46206 -14.30306 -14.03842 -13.89575 -13.53951 -13.43617 -13.08613 -12.85305 -12.67697 -12.63934 -12.21250 -12.07990 -11.73764 -11.56278 -11.39743 -11.10292 -10.99009 -10.70929 -10.44068 -9.89195 -8.21951 -6.52991 0.49039 1.20589 1.46396 1.47391 1.60478 1.68887 1.84858 2.05799 2.36683 2.54018 2.93672 3.21316 3.24064 3.31002 3.59886 3.64951 3.77603 3.79442 3.86693 4.15575 4.18197 4.21747 4.29641 4.52656 4.68033 4.80860 4.87365 4.93263 4.96511 5.31550 5.39408 5.49860 5.64187 5.77815 6.03420 6.30215 6.52543 6.70888 7.09285 7.18093 7.55759 8.71288 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.002623 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.684043 B =10670.609862 C =11299.151914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.270 3.730 10 H 0.046 0.954 11 N -0.717 5.717 12 C 0.697 3.303 13 O -0.629 6.629 14 N -0.727 5.727 15 C 0.136 3.864 16 C 0.094 3.906 17 N -0.578 5.578 18 C 0.519 3.481 19 O -0.520 6.520 20 C -0.141 4.141 21 C -0.141 4.141 22 C 0.518 3.482 23 O -0.521 6.521 24 C 0.412 3.588 25 F -0.220 7.220 26 F -0.150 7.150 27 F -0.203 7.203 28 H 0.269 0.731 29 H 0.412 0.588 30 H 0.415 0.585 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -22.505 3.674 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.597 4.597 8 H 0.112 0.888 9 C 0.162 3.838 10 H 0.064 0.936 11 N -0.371 5.371 12 C 0.396 3.604 13 O -0.509 6.509 14 N -0.385 5.385 15 C 0.010 3.990 16 C -0.028 4.028 17 N -0.321 5.321 18 C 0.311 3.689 19 O -0.394 6.394 20 C -0.180 4.180 21 C -0.180 4.180 22 C 0.310 3.690 23 O -0.395 6.395 24 C 0.355 3.645 25 F -0.202 7.202 26 F -0.132 7.132 27 F -0.184 7.184 28 H 0.079 0.921 29 H 0.249 0.751 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.822 -22.110 3.882 24.119 hybrid contribution 0.418 1.411 -0.804 1.677 sum 9.240 -20.699 3.078 22.876 Atomic orbital electron populations 1.70545 1.07546 1.28147 1.44684 1.26029 0.95920 1.03765 0.93448 0.85072 0.79130 0.77267 0.77600 1.17772 1.20670 1.20347 1.21260 0.94623 0.88140 1.55709 0.88787 1.19208 0.88413 0.86555 0.89603 0.93621 1.44952 1.17545 1.08909 1.65671 1.16190 0.84249 0.81098 0.78837 1.90894 1.21905 1.83682 1.54430 1.44558 1.16627 1.09257 1.68096 1.21243 0.97485 0.81701 0.98562 1.21763 0.96974 0.81290 1.02816 1.46887 1.56291 1.15863 1.13036 1.21828 0.75790 0.91356 0.79951 1.90800 1.42705 1.59503 1.46390 1.22608 1.05791 0.90379 0.99199 1.22616 1.07627 0.95668 0.92061 1.21855 0.73770 0.86383 0.87010 1.90803 1.50650 1.82014 1.16051 1.23370 0.80902 0.72332 0.87852 1.93064 1.81605 1.48523 1.97019 1.93376 1.68974 1.54486 1.96319 1.92981 1.74085 1.96145 1.55227 0.92134 0.75130 0.74747 0.92849 0.93240 0.87170 0.86922 0.83953 0.83047 0.84022 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.17 9.50 21.45 0.20 -48.97 16 2 C 0.01 0.71 5.20 84.65 0.44 1.15 16 3 Si 0.99 40.82 29.54 68.60 2.03 42.85 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.56 -28.62 8.46 25.60 0.22 -28.40 16 8 H 0.09 4.39 7.74 -2.91 -0.02 4.37 16 9 C 0.27 13.92 2.21 44.24 0.10 14.02 16 10 H 0.05 2.73 7.58 -2.39 -0.02 2.71 16 11 N -0.72 -29.84 4.99 -461.41 -2.30 -32.14 16 12 C 0.70 28.99 8.10 179.06 1.45 30.44 16 13 O -0.63 -32.34 14.92 -4.01 -0.06 -32.40 16 14 N -0.73 -21.48 5.56 -478.52 -2.66 -24.14 16 15 C 0.14 3.74 6.00 86.38 0.52 4.26 16 16 C 0.09 1.79 5.67 86.38 0.49 2.28 16 17 N -0.58 -9.70 2.55 -756.66 -1.93 -11.63 16 18 C 0.52 7.91 8.08 87.99 0.71 8.62 16 19 O -0.52 -12.38 17.47 -2.86 -0.05 -12.43 16 20 C -0.14 -0.45 7.03 30.46 0.21 -0.23 16 21 C -0.14 -0.47 7.03 30.46 0.21 -0.26 16 22 C 0.52 8.07 8.08 87.99 0.71 8.78 16 23 O -0.52 -12.75 17.48 -2.85 -0.05 -12.80 16 24 C 0.41 22.01 2.81 71.98 0.20 22.21 16 25 F -0.22 -11.90 15.68 44.97 0.70 -11.20 16 26 F -0.15 -8.68 12.91 44.97 0.58 -8.10 16 27 F -0.20 -10.15 16.94 44.97 0.76 -9.38 16 28 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.41 14.04 8.55 -92.71 -0.79 13.25 16 30 H 0.42 8.80 8.49 -92.71 -0.79 8.01 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.90 7.83 -2.38 -0.02 1.88 16 34 H 0.11 1.90 7.82 -2.39 -0.02 1.88 16 35 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: -1.00 -81.99 342.68 2.06 -79.93 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.42 Total: 17.54 kcal Atomic # 6 Polarization: 57.60 SS G_CDS: 5.26 Total: 62.87 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -6.69 Total: -116.88 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -0.16 Total: -57.62 kcal Atomic # 9 Polarization: -30.73 SS G_CDS: 2.05 Total: -28.68 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -81.99 2.06 -79.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627546431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.690 kcal (2) G-P(sol) polarization free energy of solvation -81.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds