Wall clock time and date at job start Tue Mar 31 2020 20:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46510 * 120.00114 * 2 1 4 4 C 1.50699 * 109.47195 * 90.00062 * 3 2 1 5 5 N 1.31261 * 126.19719 * 270.00156 * 4 3 2 6 6 N 1.28808 * 110.03598 * 179.97438 * 5 4 3 7 7 C 1.31391 * 109.26039 * 359.97438 * 6 5 4 8 8 C 1.46888 * 134.26881 * 179.97438 * 7 6 5 9 9 O 1.21746 * 120.78396 * 0.02562 * 8 7 6 10 10 N 1.35151 * 118.43350 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.85739 * 180.02562 * 10 8 7 12 12 C 1.38155 * 120.28760 * 0.26815 * 10 8 7 13 13 C 1.32811 * 121.83959 * 359.43630 * 12 10 8 14 14 N 1.34466 * 126.20247 * 89.99768 * 4 3 2 15 15 C 1.34774 * 119.99973 * 179.97438 * 2 1 3 16 16 O 1.21288 * 120.00114 * 180.02562 * 15 2 1 17 17 C 1.50700 * 120.00181 * 0.02562 * 15 2 1 18 18 S 1.80997 * 109.47299 * 179.97438 * 17 15 2 19 19 C 1.76200 * 99.99856 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00089 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00182 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46682 * 59.99720 * 23 21 19 25 25 H 1.48499 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47206 * 299.99485 * 23 21 19 27 27 H 1.08997 * 109.47257 * 89.99677 * 1 2 3 28 28 H 1.08992 * 109.47467 * 210.00554 * 1 2 3 29 29 H 1.09006 * 109.47053 * 330.00399 * 1 2 3 30 30 H 1.08998 * 109.47073 * 329.99616 * 3 2 1 31 31 H 1.09000 * 109.46746 * 209.99912 * 3 2 1 32 32 H 1.09002 * 109.47391 * 89.99512 * 11 10 8 33 33 H 1.09001 * 109.46813 * 329.99568 * 11 10 8 34 34 H 1.09004 * 109.47041 * 209.99695 * 11 10 8 35 35 H 1.07995 * 119.07665 * 179.70427 * 12 10 8 36 36 H 1.08000 * 119.45284 * 180.28922 * 13 12 10 37 37 H 1.09000 * 109.46741 * 300.00343 * 17 15 2 38 38 H 1.09004 * 109.46998 * 60.00045 * 17 15 2 39 39 H 0.96998 * 120.00004 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 7 1.6606 2.4572 2.1517 6 7 2.1770 2.6347 3.3183 7 6 3.3247 1.9984 3.3855 8 6 4.3462 1.8338 4.4281 9 8 4.2125 2.3566 5.5195 10 7 5.4379 1.0883 4.1473 11 6 6.4759 0.9030 5.1645 12 6 5.5818 0.5042 2.9036 13 6 4.6626 0.6411 1.9547 14 7 3.5207 1.3905 2.1696 15 6 2.1388 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3853 -2.4723 0.0005 18 16 2.5615 -3.8480 0.0005 19 6 1.4414 -5.2082 -0.0003 20 1 0.3761 -5.0304 -0.0001 21 6 1.9280 -6.5080 0.0001 22 7 3.2265 -6.7247 0.0004 23 14 0.7405 -7.9500 0.0000 24 1 -0.1142 -7.8872 -1.2127 25 1 1.5066 -9.2221 -0.0003 26 1 -0.1147 -7.8870 1.2123 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8898 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6085 2.0284 -0.5139 31 1 3.1499 1.1384 -0.5138 32 1 6.2483 0.0181 5.7589 33 1 6.5088 1.7781 5.8135 34 1 7.4428 0.7750 4.6778 35 1 6.4643 -0.0836 2.6987 36 1 4.8123 0.1638 0.9976 37 1 0.7583 -2.5298 0.8903 38 1 0.7590 -2.5302 -0.8897 39 1 3.5666 -7.6331 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634658604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:34 Heat of formation + Delta-G solvation = 53.627768 kcal Electronic energy + Delta-G solvation = -26531.276842 eV Core-core repulsion = 22603.216537 eV Total energy + Delta-G solvation = -3928.060305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.85325 -40.60807 -39.65588 -37.67010 -35.74248 -35.14420 -32.51827 -32.35259 -30.59825 -29.83631 -28.22590 -27.46133 -25.94115 -25.45940 -24.39131 -23.83716 -21.69154 -19.71026 -19.04374 -18.78403 -17.78071 -17.32526 -17.12574 -16.85158 -16.13720 -16.03746 -15.68294 -15.38642 -14.88241 -14.64763 -14.26402 -14.06377 -13.59568 -13.55590 -13.29691 -13.10300 -12.80452 -12.75809 -12.64865 -12.60909 -12.24431 -12.07952 -11.99074 -11.14246 -11.10413 -11.06243 -10.97697 -10.84632 -10.80280 -9.93303 -9.90130 -9.51381 -9.14467 -8.96370 -8.38739 -8.37800 -6.61671 -6.31238 -4.02549 0.59290 1.11139 1.94734 2.00317 2.24258 2.74208 2.87893 2.97947 3.17811 3.20338 3.23298 3.47321 3.57115 3.88443 4.11587 4.29288 4.40494 4.50648 4.69587 4.79452 4.93424 5.03781 5.04903 5.08361 5.14433 5.24827 5.30867 5.41396 5.44918 5.52134 5.59325 5.66741 5.76928 5.91463 6.01283 6.25669 6.31163 6.70486 7.20723 7.27576 7.50891 8.20200 8.22667 8.26046 9.14863 10.76127 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.003217 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.496450 B = 8700.413041 C = 9922.680271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.202 3.798 4 C 0.182 3.818 5 N -0.269 5.269 6 N -0.211 5.211 7 C 0.103 3.897 8 C 0.595 3.405 9 O -0.488 6.488 10 N -0.533 5.533 11 C 0.075 3.925 12 C 0.085 3.915 13 C -0.014 4.014 14 N -0.372 5.372 15 C 0.539 3.461 16 O -0.519 6.519 17 C -0.151 4.151 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.076 3.924 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.274 1.274 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 15.813 1.654 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.354 5.354 3 C 0.075 3.925 4 C -0.084 4.084 5 N -0.114 5.114 6 N -0.058 5.058 7 C -0.159 4.159 8 C 0.382 3.618 9 O -0.358 6.358 10 N -0.255 5.255 11 C -0.066 4.066 12 C -0.034 4.034 13 C -0.132 4.132 14 N -0.056 5.056 15 C 0.328 3.672 16 O -0.393 6.393 17 C -0.301 4.301 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.134 4.134 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.207 0.793 36 H 0.216 0.784 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.928 16.824 2.746 17.745 hybrid contribution -1.246 -1.864 -0.357 2.270 sum 3.682 14.961 2.389 15.591 Atomic orbital electron populations 1.21906 0.78353 1.04016 1.02354 1.47948 1.07639 1.04524 1.75297 1.19740 1.00384 0.86941 0.85388 1.25464 0.84956 0.99233 0.98760 1.74754 1.22868 1.15678 0.98071 1.74583 1.03080 1.16309 1.11831 1.24621 0.99566 1.03893 0.87860 1.16442 0.80121 0.79509 0.85769 1.90927 1.75947 1.46795 1.22152 1.45329 1.20485 1.45880 1.13791 1.22092 0.89153 1.04279 0.91084 1.21509 1.00847 0.98164 0.82917 1.21519 0.85493 1.02172 1.04012 1.43576 1.16317 1.33996 1.11760 1.20493 0.87927 0.84606 0.74220 1.90558 1.13748 1.86821 1.48198 1.23564 1.04719 0.96801 1.05027 1.85237 1.07953 0.93265 1.96763 1.22811 0.94283 0.92133 1.59265 0.90939 1.24974 0.95699 0.98358 0.94358 1.69994 1.11750 1.21854 1.46729 0.86229 0.80207 0.80237 0.78902 1.19852 1.20756 1.19900 0.91869 0.90482 0.90414 0.86247 0.87263 0.90482 0.89043 0.89148 0.79341 0.78421 0.89183 0.88839 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.84 0.61 1.37 16 2 N -0.62 -7.67 2.86 -182.95 -0.52 -8.20 16 3 C 0.20 2.13 5.93 -5.19 -0.03 2.10 16 4 C 0.18 2.44 7.70 -155.30 -1.20 1.25 16 5 N -0.27 -4.15 12.23 32.73 0.40 -3.75 16 6 N -0.21 -3.63 12.29 32.34 0.40 -3.23 16 7 C 0.10 1.60 8.12 -154.30 -1.25 0.35 16 8 C 0.59 8.50 7.66 -12.59 -0.10 8.40 16 9 O -0.49 -8.06 16.79 5.15 0.09 -7.98 16 10 N -0.53 -5.47 3.06 -124.90 -0.38 -5.85 16 11 C 0.07 0.49 10.43 59.85 0.62 1.11 16 12 C 0.08 0.76 10.24 -16.56 -0.17 0.59 16 13 C -0.01 -0.16 10.44 -16.51 -0.17 -0.33 16 14 N -0.37 -5.08 2.97 -58.39 -0.17 -5.26 16 15 C 0.54 8.80 7.69 -10.99 -0.08 8.71 16 16 O -0.52 -9.32 13.08 5.55 0.07 -9.25 16 17 C -0.15 -2.80 4.71 36.01 0.17 -2.64 16 18 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 19 C -0.54 -14.62 9.50 30.94 0.29 -14.33 16 20 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 21 C 0.08 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.05 13.22 55.49 0.73 -24.32 16 23 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.12 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.11 1.08 7.42 -51.93 -0.39 0.70 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.64 7.45 -51.93 -0.39 0.25 16 34 H 0.09 0.29 8.03 -51.93 -0.42 -0.12 16 35 H 0.19 0.92 8.05 -52.49 -0.42 0.50 16 36 H 0.20 2.23 6.10 -52.49 -0.32 1.91 16 37 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 38 H 0.09 1.61 8.11 -51.91 -0.42 1.19 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -36.68 353.63 -6.99 -43.68 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.30 Total: -1.74 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.40 Total: 8.55 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.45 Total: -50.60 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.16 Total: -17.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.68 -6.99 -43.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634658604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.303 kcal (2) G-P(sol) polarization free energy of solvation -36.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds