Wall clock time and date at job start Tue Mar 31 2020 20:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46510 * 120.00114 * 2 1 4 4 C 1.50699 * 109.47195 * 90.00062 * 3 2 1 5 5 N 1.31261 * 126.19719 * 270.00156 * 4 3 2 6 6 N 1.28808 * 110.03598 * 179.97438 * 5 4 3 7 7 C 1.31391 * 109.26039 * 359.97438 * 6 5 4 8 8 C 1.46888 * 134.26881 * 179.97438 * 7 6 5 9 9 O 1.21746 * 120.78396 * 0.02562 * 8 7 6 10 10 N 1.35151 * 118.43350 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.85739 * 180.02562 * 10 8 7 12 12 C 1.38155 * 120.28760 * 0.26815 * 10 8 7 13 13 C 1.32811 * 121.83959 * 359.43630 * 12 10 8 14 14 N 1.34466 * 126.20247 * 89.99768 * 4 3 2 15 15 C 1.34774 * 119.99973 * 179.97438 * 2 1 3 16 16 O 1.21288 * 120.00114 * 180.02562 * 15 2 1 17 17 C 1.50700 * 120.00181 * 0.02562 * 15 2 1 18 18 S 1.80997 * 109.47299 * 179.97438 * 17 15 2 19 19 C 1.76200 * 99.99856 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00089 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00182 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46682 * 59.99720 * 23 21 19 25 25 H 1.48499 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47206 * 299.99485 * 23 21 19 27 27 H 1.08997 * 109.47257 * 89.99677 * 1 2 3 28 28 H 1.08992 * 109.47467 * 210.00554 * 1 2 3 29 29 H 1.09006 * 109.47053 * 330.00399 * 1 2 3 30 30 H 1.08998 * 109.47073 * 329.99616 * 3 2 1 31 31 H 1.09000 * 109.46746 * 209.99912 * 3 2 1 32 32 H 1.09002 * 109.47391 * 89.99512 * 11 10 8 33 33 H 1.09001 * 109.46813 * 329.99568 * 11 10 8 34 34 H 1.09004 * 109.47041 * 209.99695 * 11 10 8 35 35 H 1.07995 * 119.07665 * 179.70427 * 12 10 8 36 36 H 1.08000 * 119.45284 * 180.28922 * 13 12 10 37 37 H 1.09000 * 109.46741 * 300.00343 * 17 15 2 38 38 H 1.09004 * 109.46998 * 60.00045 * 17 15 2 39 39 H 0.96998 * 120.00004 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 7 1.6606 2.4572 2.1517 6 7 2.1770 2.6347 3.3183 7 6 3.3247 1.9984 3.3855 8 6 4.3462 1.8338 4.4281 9 8 4.2125 2.3566 5.5195 10 7 5.4379 1.0883 4.1473 11 6 6.4759 0.9030 5.1645 12 6 5.5818 0.5042 2.9036 13 6 4.6626 0.6411 1.9547 14 7 3.5207 1.3905 2.1696 15 6 2.1388 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3853 -2.4723 0.0005 18 16 2.5615 -3.8480 0.0005 19 6 1.4414 -5.2082 -0.0003 20 1 0.3761 -5.0304 -0.0001 21 6 1.9280 -6.5080 0.0001 22 7 3.2265 -6.7247 0.0004 23 14 0.7405 -7.9500 0.0000 24 1 -0.1142 -7.8872 -1.2127 25 1 1.5066 -9.2221 -0.0003 26 1 -0.1147 -7.8870 1.2123 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8898 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6085 2.0284 -0.5139 31 1 3.1499 1.1384 -0.5138 32 1 6.2483 0.0181 5.7589 33 1 6.5088 1.7781 5.8135 34 1 7.4428 0.7750 4.6778 35 1 6.4643 -0.0836 2.6987 36 1 4.8123 0.1638 0.9976 37 1 0.7583 -2.5298 0.8903 38 1 0.7590 -2.5302 -0.8897 39 1 3.5666 -7.6331 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634658604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:33 Heat of formation + Delta-G solvation = 29.405458 kcal Electronic energy + Delta-G solvation = -26532.327200 eV Core-core repulsion = 22603.216537 eV Total energy + Delta-G solvation = -3929.110663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.90706 -41.58934 -40.84567 -38.69578 -36.85258 -36.11023 -34.57645 -33.40909 -31.48983 -31.11722 -29.14194 -28.38442 -27.67991 -26.79793 -25.32905 -24.80875 -22.73550 -20.91433 -20.10345 -19.78337 -19.53207 -18.40214 -18.07191 -17.96737 -17.22082 -17.10180 -16.86954 -16.75051 -16.43551 -15.85699 -15.61996 -15.13912 -14.66289 -14.49555 -14.47893 -14.35774 -13.92384 -13.64115 -13.56031 -13.46307 -13.29408 -13.17643 -13.13922 -13.05363 -12.88089 -12.62773 -12.05379 -11.95444 -11.87275 -11.73659 -11.12760 -11.12454 -10.71852 -10.28684 -9.98716 -9.27418 -8.63251 -8.35028 -6.10646 -0.41054 0.10391 0.98569 1.08031 1.16582 1.33043 1.42838 1.46924 1.50543 1.58257 1.94541 2.15340 2.27669 2.62336 2.94671 2.99691 3.23479 3.34214 3.51589 3.73147 3.81146 4.15889 4.16720 4.19149 4.28470 4.32347 4.44754 4.47278 4.50106 4.56282 4.72045 4.73237 4.78543 4.94892 5.05872 5.30794 5.39147 5.42576 5.78072 6.09990 6.19759 6.28238 7.00174 7.07732 7.09821 8.73352 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.003217 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.496450 B = 8700.413041 C = 9922.680271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.204 3.796 4 C 0.180 3.820 5 N -0.284 5.284 6 N -0.251 5.251 7 C 0.084 3.916 8 C 0.585 3.415 9 O -0.523 6.523 10 N -0.522 5.522 11 C 0.066 3.934 12 C 0.110 3.890 13 C -0.046 4.046 14 N -0.367 5.367 15 C 0.538 3.462 16 O -0.539 6.539 17 C -0.130 4.130 18 S -0.127 6.127 19 C -0.552 4.552 20 H 0.078 0.922 21 C 0.020 3.980 22 N -0.907 5.907 23 Si 0.989 3.011 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.267 1.267 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.238 0.762 36 H 0.201 0.799 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 15.479 0.816 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.078 3.922 4 C -0.087 4.087 5 N -0.128 5.128 6 N -0.098 5.098 7 C -0.179 4.179 8 C 0.373 3.627 9 O -0.396 6.396 10 N -0.242 5.242 11 C -0.073 4.073 12 C -0.009 4.009 13 C -0.163 4.163 14 N -0.051 5.051 15 C 0.326 3.674 16 O -0.416 6.416 17 C -0.281 4.281 18 S 0.100 5.900 19 C -0.700 4.700 20 H 0.096 0.904 21 C -0.185 4.185 22 N -0.543 5.543 23 Si 0.812 3.188 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.191 1.191 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.254 0.746 36 H 0.218 0.782 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.889 16.503 1.893 17.316 hybrid contribution -1.181 -1.683 -0.090 2.058 sum 3.708 14.821 1.803 15.383 Atomic orbital electron populations 1.22138 0.76569 1.04260 1.04180 1.47870 1.08707 1.03921 1.73647 1.20102 1.01462 0.86596 0.84026 1.25926 0.84622 0.98711 0.99434 1.74644 1.23645 1.16597 0.97961 1.74481 1.04404 1.17997 1.12956 1.24867 0.99726 1.04311 0.89005 1.16591 0.80925 0.80052 0.85166 1.90894 1.76898 1.48599 1.23253 1.45561 1.19710 1.44051 1.14908 1.22463 0.89756 1.04234 0.90812 1.22278 1.01216 0.96118 0.81338 1.21814 0.85713 1.03573 1.05188 1.43741 1.16836 1.33452 1.11026 1.20087 0.87558 0.84963 0.74817 1.90552 1.14433 1.87141 1.49460 1.23400 1.03164 0.95452 1.06056 1.85241 1.11544 0.96246 1.96988 1.23178 0.94735 0.93062 1.58994 0.90403 1.25974 0.97426 1.01339 0.93762 1.70133 1.13766 1.22521 1.47871 0.85131 0.77906 0.76443 0.79356 1.18725 1.20300 1.19139 0.89199 0.91191 0.89298 0.82685 0.86368 0.89797 0.89772 0.84844 0.74579 0.78231 0.88649 0.87230 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.24 127.77 1.31 2.51 16 2 N -0.61 -13.80 2.86 -851.13 -2.43 -16.23 16 3 C 0.20 3.87 5.93 85.63 0.51 4.38 16 4 C 0.18 4.68 7.70 138.09 1.06 5.74 16 5 N -0.28 -8.76 12.23 -50.38 -0.62 -9.38 16 6 N -0.25 -8.87 12.29 -51.59 -0.63 -9.50 16 7 C 0.08 2.65 8.12 135.97 1.10 3.75 16 8 C 0.59 16.85 7.66 86.45 0.66 17.51 16 9 O -0.52 -17.83 16.79 -4.49 -0.08 -17.90 16 10 N -0.52 -9.86 3.06 -667.06 -2.04 -11.90 16 11 C 0.07 0.70 10.43 127.77 1.33 2.03 16 12 C 0.11 1.68 10.24 82.52 0.84 2.52 16 13 C -0.05 -0.97 10.44 82.50 0.86 -0.11 16 14 N -0.37 -9.87 2.97 -338.66 -1.01 -10.87 16 15 C 0.54 16.86 7.69 87.66 0.67 17.54 16 16 O -0.54 -18.92 13.08 -3.05 -0.04 -18.96 16 17 C -0.13 -4.70 4.71 71.24 0.34 -4.36 16 18 S -0.13 -6.45 20.57 -56.49 -1.16 -7.61 16 19 C -0.55 -30.02 9.50 67.95 0.65 -29.38 16 20 H 0.08 3.99 7.80 -2.91 -0.02 3.96 16 21 C 0.02 1.11 5.49 84.86 0.47 1.58 16 22 N -0.91 -52.77 13.22 21.65 0.29 -52.49 16 23 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.32 6.44 -2.39 -0.02 1.30 16 29 H 0.09 1.37 8.07 -2.38 -0.02 1.35 16 30 H 0.16 1.86 8.07 -2.39 -0.02 1.84 16 31 H 0.12 2.10 7.42 -2.39 -0.02 2.08 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.08 7.45 -2.39 -0.02 1.06 16 34 H 0.13 0.29 8.03 -2.38 -0.02 0.27 16 35 H 0.24 1.23 8.05 -2.91 -0.02 1.21 16 36 H 0.20 4.24 6.10 -2.91 -0.02 4.22 16 37 H 0.10 3.35 7.40 -2.39 -0.02 3.33 16 38 H 0.11 3.59 8.11 -2.39 -0.02 3.57 16 39 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -83.12 353.63 5.21 -77.91 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.10 Total: 9.19 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 9.81 Total: 23.72 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -6.44 Total: -110.38 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.12 Total: -36.86 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.16 Total: -7.61 kcal Total: -83.12 5.21 -77.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634658604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.314 kcal (2) G-P(sol) polarization free energy of solvation -83.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds