Wall clock time and date at job start Tue Mar 31 2020 19:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38052 * 126.29323 * 2 1 4 4 C 1.47415 * 126.41654 * 0.02715 * 3 2 1 5 5 O 1.21621 * 119.99765 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.40077 * 119.99970 * 185.52783 * 6 4 3 8 8 C 1.38792 * 120.06100 * 24.82211 * 7 6 4 9 9 C 1.38368 * 119.99561 * 180.02562 * 8 7 6 10 10 F 1.35103 * 119.93448 * 179.97438 * 9 8 7 11 11 C 1.38483 * 120.12721 * 0.02562 * 9 8 7 12 12 C 1.38425 * 120.12756 * 359.74625 * 11 9 8 13 13 F 1.35100 * 119.99603 * 180.25469 * 12 11 9 14 14 C 1.38710 * 119.99992 * 0.50796 * 12 11 9 15 15 O 1.36084 * 120.06211 * 179.76831 * 14 12 11 16 16 C 1.41294 * 107.16771 * 180.28472 * 3 2 1 17 17 N 1.30443 * 108.02700 * 359.55983 * 16 3 2 18 18 N 1.34277 * 126.29308 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75320 * 359.95299 * 18 2 1 20 20 C 1.50707 * 109.46918 * 90.00367 * 19 18 2 21 21 H 1.08003 * 120.00044 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99923 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99932 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47554 * 89.99531 * 24 22 20 26 26 H 1.48501 * 109.47125 * 209.99861 * 24 22 20 27 27 H 1.48502 * 109.47263 * 329.99668 * 24 22 20 28 28 H 1.08995 * 109.47393 * 89.97244 * 1 2 3 29 29 H 1.08998 * 109.47246 * 209.97219 * 1 2 3 30 30 H 1.09000 * 109.47650 * 329.96992 * 1 2 3 31 31 H 0.96994 * 119.99993 * 5.53189 * 6 4 3 32 32 H 1.08003 * 120.00212 * 0.02562 * 8 7 6 33 33 H 1.07998 * 119.93242 * 180.02562 * 11 9 8 34 34 H 0.96698 * 113.99849 * 269.72289 * 15 14 12 35 35 H 1.08009 * 125.98539 * 179.74056 * 16 3 2 36 36 H 1.08994 * 109.47031 * 210.00245 * 19 18 2 37 37 H 1.08997 * 109.47423 * 330.00658 * 19 18 2 38 38 H 0.96999 * 120.00053 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8860 2.5202 0.0006 5 8 0.6995 2.7878 0.0006 6 7 2.8001 3.5105 0.0010 7 6 2.3879 4.8441 0.1184 8 6 1.1799 5.1471 0.7309 9 6 0.7738 6.4648 0.8457 10 9 -0.4026 6.7583 1.4417 11 6 1.5703 7.4833 0.3499 12 6 2.7784 7.1874 -0.2578 13 9 3.5558 8.1835 -0.7360 14 6 3.1882 5.8679 -0.3804 15 8 4.3733 5.5753 -0.9818 16 6 3.6590 0.6498 -0.0067 17 7 3.6341 -0.6544 -0.0009 18 7 2.3018 -1.0823 -0.0005 19 6 1.8502 -2.4759 -0.0001 20 6 1.6945 -2.9539 -1.4209 21 1 1.9099 -2.2861 -2.2420 22 6 1.2760 -4.2433 -1.6726 23 7 1.0131 -5.0562 -0.6728 24 14 1.0837 -4.8359 -3.4336 25 1 2.3644 -5.4250 -3.9003 26 1 0.0140 -5.8640 -3.4959 27 1 0.7197 -3.6896 -4.3047 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 3.7434 3.2998 -0.0800 32 1 0.5568 4.3543 1.1180 33 1 1.2505 8.5108 0.4415 34 1 4.3055 5.4318 -1.9356 35 1 4.5450 1.2676 -0.0124 36 1 2.5851 -3.0958 0.5133 37 1 0.8918 -2.5473 0.5142 38 1 0.7191 -5.9634 -0.8498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638361316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:38 Heat of formation + Delta-G solvation = -69.227856 kcal Electronic energy + Delta-G solvation = -27930.134974 eV Core-core repulsion = 23410.614112 eV Total energy + Delta-G solvation = -4519.520862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.30145 -49.20866 -41.22948 -40.42827 -38.64803 -36.83070 -34.84909 -33.97847 -32.23000 -31.46336 -30.20401 -29.43962 -27.46155 -26.79724 -24.20181 -23.40948 -23.03580 -22.04937 -20.19661 -19.53228 -18.94170 -18.46348 -17.94301 -17.05257 -16.84516 -16.48820 -16.21138 -16.07553 -15.68900 -15.39773 -15.31191 -14.99018 -14.64357 -14.54177 -14.37349 -14.15687 -13.81689 -13.38276 -13.00299 -12.80131 -12.56967 -12.37788 -12.26502 -12.20414 -11.90816 -11.60883 -11.31099 -11.20203 -10.95856 -10.64347 -10.44384 -10.34835 -10.03926 -9.67815 -8.90887 -8.78558 -8.75826 -8.54060 -8.10685 -6.41243 -4.49721 0.51009 0.62935 1.90351 2.57523 2.63901 2.92699 3.13270 3.18925 3.20473 3.28307 3.50476 3.62644 3.77477 4.02771 4.17713 4.50923 4.64746 4.70823 4.92641 4.97903 5.08018 5.30215 5.31664 5.48073 5.52874 5.58371 5.73362 5.82225 5.97435 6.05577 6.30767 6.37528 6.44395 6.63780 6.79993 6.98801 7.13792 7.23676 7.44902 7.63671 7.68058 8.09016 8.22023 8.55166 9.17762 10.67035 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002447 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.722862 B =11442.158432 C =11975.925387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.175 3.825 3 C -0.339 4.339 4 C 0.606 3.394 5 O -0.529 6.529 6 N -0.664 5.664 7 C 0.204 3.796 8 C -0.169 4.169 9 C 0.149 3.851 10 F -0.126 7.126 11 C -0.207 4.207 12 C 0.129 3.871 13 F -0.123 7.123 14 C 0.021 3.979 15 O -0.480 6.480 16 C 0.061 3.939 17 N -0.290 5.290 18 N -0.310 5.310 19 C 0.250 3.750 20 C -0.543 4.543 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.419 0.581 32 H 0.173 0.827 33 H 0.151 0.849 34 H 0.391 0.609 35 H 0.178 0.822 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 21.160 1.830 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.037 3.963 3 C -0.354 4.354 4 C 0.400 3.600 5 O -0.406 6.406 6 N -0.308 5.308 7 C 0.106 3.894 8 C -0.191 4.191 9 C 0.128 3.872 10 F -0.104 7.104 11 C -0.228 4.228 12 C 0.109 3.891 13 F -0.102 7.102 14 C -0.028 4.028 15 O -0.289 6.289 16 C -0.126 4.126 17 N -0.109 5.109 18 N -0.087 5.087 19 C 0.133 3.867 20 C -0.581 4.581 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.196 1.196 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.257 0.743 32 H 0.190 0.810 33 H 0.169 0.831 34 H 0.247 0.753 35 H 0.195 0.805 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.019 19.843 2.467 20.098 hybrid contribution -0.122 0.370 -1.515 1.564 sum 1.897 20.213 0.952 20.324 Atomic orbital electron populations 1.20616 0.86541 1.04036 1.04183 1.21502 0.95054 0.86414 0.93346 1.19425 0.93472 0.91490 1.31058 1.17500 0.84696 0.83973 0.73855 1.90689 1.16499 1.83801 1.49626 1.43364 1.11888 1.02775 1.72730 1.17447 0.92989 0.84017 0.94978 1.21423 0.98352 0.96427 1.02885 1.16999 0.82447 0.92340 0.95369 1.91549 1.44089 1.93990 1.80816 1.20871 0.94973 1.01049 1.05922 1.17203 0.89462 0.83962 0.98495 1.91532 1.73537 1.59335 1.85757 1.17870 0.90175 0.89637 1.05144 1.84921 1.25739 1.91722 1.26524 1.23780 0.96203 0.92743 0.99899 1.77191 0.98576 1.12134 1.23037 1.49461 1.02462 1.08447 1.48280 1.19918 0.96539 0.70630 0.99615 1.21223 1.47772 0.98239 0.90859 0.91623 1.24922 0.94330 0.95965 0.98376 1.69906 1.44263 1.07215 1.31176 0.86310 0.78153 0.78680 0.83320 1.20203 1.20730 1.19579 0.89531 0.90554 0.88755 0.74294 0.81028 0.83114 0.75254 0.80479 0.92345 0.92394 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.57 36.00 0.34 -1.22 16 2 C 0.17 3.26 7.01 -81.59 -0.57 2.69 16 3 C -0.34 -5.53 6.13 -105.07 -0.64 -6.17 16 4 C 0.61 8.75 7.62 -12.53 -0.10 8.66 16 5 O -0.53 -8.56 12.00 5.26 0.06 -8.49 16 6 N -0.66 -7.42 5.27 -10.73 -0.06 -7.48 16 7 C 0.20 2.26 6.44 -83.53 -0.54 1.73 16 8 C -0.17 -1.99 8.69 -39.33 -0.34 -2.33 16 9 C 0.15 1.58 7.29 -39.44 -0.29 1.29 16 10 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 11 C -0.21 -1.91 10.00 -39.42 -0.39 -2.30 16 12 C 0.13 1.27 7.30 -39.34 -0.29 0.98 16 13 F -0.12 -1.25 17.11 2.25 0.04 -1.21 16 14 C 0.02 0.21 6.73 -39.05 -0.26 -0.06 16 15 O -0.48 -4.05 12.78 -20.01 -0.26 -4.31 16 16 C 0.06 0.96 11.51 -16.98 -0.20 0.77 16 17 N -0.29 -5.82 12.50 30.86 0.39 -5.43 16 18 N -0.31 -6.57 3.56 -57.77 -0.21 -6.77 16 19 C 0.25 5.92 5.97 -5.19 -0.03 5.89 16 20 C -0.54 -14.06 9.39 -34.44 -0.32 -14.38 16 21 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 24 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.08 1.23 7.05 -51.93 -0.37 0.86 16 30 H 0.09 1.43 6.50 -51.93 -0.34 1.10 16 31 H 0.42 3.77 7.31 -40.82 -0.30 3.47 16 32 H 0.17 2.27 5.78 -52.48 -0.30 1.96 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.39 1.80 9.07 45.56 0.41 2.21 16 35 H 0.18 1.92 7.51 -52.48 -0.39 1.53 16 36 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.06 1.36 7.02 -51.93 -0.36 1.00 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -29.72 344.43 -5.28 -35.00 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.46 Total: 5.61 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.73 Total: -2.79 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.86 Total: -42.83 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.19 Total: -12.80 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.72 -5.28 -35.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638361316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.228 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds