Wall clock time and date at job start Tue Mar 31 2020 19:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38052 * 126.29323 * 2 1 4 4 C 1.47415 * 126.41654 * 0.02715 * 3 2 1 5 5 O 1.21621 * 119.99765 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.40077 * 119.99970 * 185.52783 * 6 4 3 8 8 C 1.38792 * 120.06100 * 24.82211 * 7 6 4 9 9 C 1.38368 * 119.99561 * 180.02562 * 8 7 6 10 10 F 1.35103 * 119.93448 * 179.97438 * 9 8 7 11 11 C 1.38483 * 120.12721 * 0.02562 * 9 8 7 12 12 C 1.38425 * 120.12756 * 359.74625 * 11 9 8 13 13 F 1.35100 * 119.99603 * 180.25469 * 12 11 9 14 14 C 1.38710 * 119.99992 * 0.50796 * 12 11 9 15 15 O 1.36084 * 120.06211 * 179.76831 * 14 12 11 16 16 C 1.41294 * 107.16771 * 180.28472 * 3 2 1 17 17 N 1.30443 * 108.02700 * 359.55983 * 16 3 2 18 18 N 1.34277 * 126.29308 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75320 * 359.95299 * 18 2 1 20 20 C 1.50707 * 109.46918 * 90.00367 * 19 18 2 21 21 H 1.08003 * 120.00044 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99923 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99932 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47554 * 89.99531 * 24 22 20 26 26 H 1.48501 * 109.47125 * 209.99861 * 24 22 20 27 27 H 1.48502 * 109.47263 * 329.99668 * 24 22 20 28 28 H 1.08995 * 109.47393 * 89.97244 * 1 2 3 29 29 H 1.08998 * 109.47246 * 209.97219 * 1 2 3 30 30 H 1.09000 * 109.47650 * 329.96992 * 1 2 3 31 31 H 0.96994 * 119.99993 * 5.53189 * 6 4 3 32 32 H 1.08003 * 120.00212 * 0.02562 * 8 7 6 33 33 H 1.07998 * 119.93242 * 180.02562 * 11 9 8 34 34 H 0.96698 * 113.99849 * 269.72289 * 15 14 12 35 35 H 1.08009 * 125.98539 * 179.74056 * 16 3 2 36 36 H 1.08994 * 109.47031 * 210.00245 * 19 18 2 37 37 H 1.08997 * 109.47423 * 330.00658 * 19 18 2 38 38 H 0.96999 * 120.00053 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8860 2.5202 0.0006 5 8 0.6995 2.7878 0.0006 6 7 2.8001 3.5105 0.0010 7 6 2.3879 4.8441 0.1184 8 6 1.1799 5.1471 0.7309 9 6 0.7738 6.4648 0.8457 10 9 -0.4026 6.7583 1.4417 11 6 1.5703 7.4833 0.3499 12 6 2.7784 7.1874 -0.2578 13 9 3.5558 8.1835 -0.7360 14 6 3.1882 5.8679 -0.3804 15 8 4.3733 5.5753 -0.9818 16 6 3.6590 0.6498 -0.0067 17 7 3.6341 -0.6544 -0.0009 18 7 2.3018 -1.0823 -0.0005 19 6 1.8502 -2.4759 -0.0001 20 6 1.6945 -2.9539 -1.4209 21 1 1.9099 -2.2861 -2.2420 22 6 1.2760 -4.2433 -1.6726 23 7 1.0131 -5.0562 -0.6728 24 14 1.0837 -4.8359 -3.4336 25 1 2.3644 -5.4250 -3.9003 26 1 0.0140 -5.8640 -3.4959 27 1 0.7197 -3.6896 -4.3047 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 3.7434 3.2998 -0.0800 32 1 0.5568 4.3543 1.1180 33 1 1.2505 8.5108 0.4415 34 1 4.3055 5.4318 -1.9356 35 1 4.5450 1.2676 -0.0124 36 1 2.5851 -3.0958 0.5133 37 1 0.8918 -2.5473 0.5142 38 1 0.7191 -5.9634 -0.8498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638361316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:38 Heat of formation + Delta-G solvation = -89.183953 kcal Electronic energy + Delta-G solvation = -27931.000335 eV Core-core repulsion = 23410.614112 eV Total energy + Delta-G solvation = -4520.386224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.07282 -50.03877 -42.50307 -41.48553 -39.64023 -37.57725 -35.95794 -35.69553 -33.85576 -32.87594 -31.17552 -30.31008 -29.06330 -28.19702 -25.60555 -24.74107 -23.93166 -23.17656 -21.42413 -20.79521 -19.77612 -19.37712 -19.00572 -18.82377 -18.00978 -17.31725 -17.16911 -17.05480 -16.71081 -16.50117 -16.47070 -16.14060 -16.03585 -15.63254 -15.48023 -15.34962 -14.89052 -14.61170 -14.32458 -14.09882 -13.76464 -13.70660 -13.59605 -13.24802 -13.15748 -13.08577 -12.94325 -12.71066 -12.31585 -12.06243 -11.86797 -11.75303 -11.52182 -10.86233 -10.76745 -10.31243 -9.75061 -9.64880 -9.25268 -8.38706 -6.54928 -0.29442 -0.20099 0.61387 1.25388 1.37547 1.38884 1.46606 1.52951 1.90461 2.06324 2.32115 2.46089 2.73280 2.94103 2.99469 3.24408 3.61158 3.68770 3.77478 3.83772 3.93895 4.12321 4.20467 4.46722 4.56566 4.60642 4.68739 4.74852 4.79302 4.88709 4.97522 5.04713 5.14563 5.19298 5.48387 5.59567 5.62757 5.73679 5.99322 6.28741 6.53803 6.58689 6.78955 7.02695 7.16452 8.69289 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002447 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.722862 B =11442.158432 C =11975.925387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.156 3.844 3 C -0.333 4.333 4 C 0.612 3.388 5 O -0.548 6.548 6 N -0.648 5.648 7 C 0.189 3.811 8 C -0.178 4.178 9 C 0.140 3.860 10 F -0.131 7.131 11 C -0.190 4.190 12 C 0.124 3.876 13 F -0.123 7.123 14 C 0.039 3.961 15 O -0.483 6.483 16 C 0.083 3.917 17 N -0.334 5.334 18 N -0.336 5.336 19 C 0.266 3.734 20 C -0.555 4.555 21 H 0.054 0.946 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.268 1.268 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.431 0.569 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.411 0.589 35 H 0.229 0.771 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 23.417 0.806 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.019 3.981 3 C -0.348 4.348 4 C 0.404 3.596 5 O -0.426 6.426 6 N -0.292 5.292 7 C 0.092 3.908 8 C -0.199 4.199 9 C 0.120 3.880 10 F -0.110 7.110 11 C -0.210 4.210 12 C 0.103 3.897 13 F -0.102 7.102 14 C -0.010 4.010 15 O -0.295 6.295 16 C -0.104 4.104 17 N -0.153 5.153 18 N -0.113 5.113 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.072 0.928 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.193 1.193 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.271 0.729 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.271 0.729 35 H 0.245 0.755 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.904 22.141 1.433 22.376 hybrid contribution -0.324 -0.131 -1.170 1.221 sum 2.581 22.010 0.264 22.162 Atomic orbital electron populations 1.20612 0.85631 1.04349 1.04194 1.21981 0.95993 0.86587 0.93503 1.19648 0.93458 0.92038 1.29671 1.17192 0.84754 0.83726 0.73901 1.90694 1.17468 1.83975 1.50514 1.43028 1.11908 1.02345 1.71917 1.17423 0.93320 0.83899 0.96201 1.21335 0.98597 0.96597 1.03372 1.17007 0.82638 0.92289 0.96074 1.91536 1.44451 1.93974 1.81020 1.21046 0.94166 1.01776 1.04008 1.17229 0.89683 0.83926 0.98824 1.91540 1.73549 1.59280 1.85784 1.17785 0.89835 0.89297 1.04093 1.84875 1.24862 1.91601 1.28200 1.24566 0.97591 0.91658 0.96586 1.77143 0.98275 1.14410 1.25462 1.49152 1.03419 1.07849 1.50858 1.19399 0.95405 0.72243 0.98195 1.21394 1.47901 0.98485 0.91562 0.92808 1.25714 0.93842 0.95997 1.02166 1.69990 1.44836 1.07607 1.33038 0.85360 0.78274 0.78252 0.78680 1.19895 1.19774 1.19278 0.89599 0.90966 0.87608 0.72867 0.82792 0.80858 0.72929 0.75505 0.94996 0.92976 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.00 9.57 71.23 0.68 -2.32 16 2 C 0.16 5.86 7.01 42.14 0.30 6.15 16 3 C -0.33 -10.49 6.13 -20.15 -0.12 -10.62 16 4 C 0.61 16.76 7.62 86.66 0.66 17.42 16 5 O -0.55 -17.31 12.00 -4.10 -0.05 -17.36 16 6 N -0.65 -12.92 5.27 -306.12 -1.61 -14.54 16 7 C 0.19 3.79 6.44 38.18 0.25 4.03 16 8 C -0.18 -3.96 8.69 22.43 0.20 -3.76 16 9 C 0.14 2.75 7.29 22.36 0.16 2.91 16 10 F -0.13 -2.77 17.26 44.97 0.78 -1.99 16 11 C -0.19 -2.99 10.00 22.37 0.22 -2.76 16 12 C 0.12 2.07 7.30 22.43 0.16 2.23 16 13 F -0.12 -2.12 17.11 44.97 0.77 -1.35 16 14 C 0.04 0.66 6.73 22.61 0.15 0.81 16 15 O -0.48 -6.47 12.78 -94.50 -1.21 -7.68 16 16 C 0.08 2.47 11.51 85.65 0.99 3.45 16 17 N -0.33 -13.37 12.50 -56.27 -0.70 -14.08 16 18 N -0.34 -14.59 3.56 -336.68 -1.20 -15.79 16 19 C 0.27 13.18 5.97 85.64 0.51 13.69 16 20 C -0.56 -29.53 9.39 25.60 0.24 -29.29 16 21 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 22 C 0.02 1.28 5.46 84.66 0.46 1.74 16 23 N -0.92 -50.18 13.29 21.45 0.28 -49.89 16 24 Si 0.97 41.51 29.54 68.60 2.03 43.53 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.07 2.42 7.05 -2.39 -0.02 2.41 16 30 H 0.11 3.24 6.50 -2.39 -0.02 3.22 16 31 H 0.43 6.31 7.31 -92.71 -0.68 5.63 16 32 H 0.15 4.04 5.78 -2.91 -0.02 4.02 16 33 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.41 2.26 9.07 -74.06 -0.67 1.59 16 35 H 0.23 4.04 7.51 -2.91 -0.02 4.02 16 36 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 2.58 7.02 -2.39 -0.02 2.57 16 38 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -65.03 344.43 3.77 -61.27 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -0.17 Total: 14.19 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.86 Total: 3.69 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.23 Total: -94.29 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -1.26 Total: -25.04 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.55 Total: -3.35 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.03 3.77 -61.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638361316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.917 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds