Wall clock time and date at job start Tue Mar 31 2020 20:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 103.00190 * 2 1 4 4 C 1.50698 * 109.47303 * 179.97438 * 3 2 1 5 5 N 1.29952 * 126.28549 * 89.97379 * 4 3 2 6 6 O 1.21299 * 110.24917 * 180.02562 * 5 4 3 7 7 C 1.33643 * 109.81105 * 359.97438 * 6 5 4 8 8 C 1.50704 * 126.54810 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47557 * 270.03262 * 8 7 6 10 10 C 1.50700 * 109.47200 * 180.02562 * 9 8 7 11 11 O 1.21299 * 120.00087 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00002 * 179.97438 * 10 9 8 13 13 C 1.40590 * 120.00322 * 180.02562 * 12 10 9 14 14 C 1.40647 * 126.07766 * 359.69679 * 13 12 10 15 15 N 1.30916 * 108.38860 * 179.81393 * 14 13 12 16 16 N 1.40066 * 108.40216 * 0.44100 * 15 14 13 17 17 C 1.37321 * 126.07124 * 179.69535 * 16 15 14 18 18 H 1.08005 * 120.00142 * 174.15198 * 17 16 15 19 19 C 1.38989 * 119.99886 * 354.16014 * 17 16 15 20 20 N 1.31297 * 119.99823 * 5.93046 * 19 17 16 21 21 Si 1.86805 * 120.00002 * 185.93734 * 19 17 16 22 22 H 1.48504 * 109.47201 * 94.97766 * 21 19 17 23 23 H 1.48497 * 109.46655 * 214.97701 * 21 19 17 24 24 H 1.48499 * 109.47073 * 334.97711 * 21 19 17 25 25 C 1.35676 * 126.08796 * 179.97438 * 13 12 10 26 26 N 1.31126 * 106.89994 * 0.23174 * 7 6 5 27 27 H 1.09000 * 109.47259 * 60.00173 * 1 2 3 28 28 H 1.08997 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47377 * 300.00142 * 1 2 3 30 30 H 1.09009 * 109.47173 * 59.99772 * 3 2 1 31 31 H 1.09000 * 109.47307 * 300.00131 * 3 2 1 32 32 H 1.08995 * 109.46986 * 150.02756 * 8 7 6 33 33 H 1.09002 * 109.46924 * 30.03412 * 8 7 6 34 34 H 1.09002 * 109.47126 * 300.00027 * 9 8 7 35 35 H 1.08995 * 109.47386 * 59.99739 * 9 8 7 36 36 H 0.97007 * 119.99658 * 0.02562 * 12 10 9 37 37 H 1.08004 * 125.81236 * 359.95827 * 14 13 12 38 38 H 0.97000 * 119.99472 * 179.97438 * 20 19 17 39 39 H 1.08004 * 126.24073 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 7 4.4841 2.0234 -1.0466 6 8 5.6424 2.1545 -0.7110 7 6 5.7291 2.1653 0.6226 8 6 6.9879 2.3076 1.4389 9 6 7.5757 0.9224 1.7157 10 6 8.8341 1.0647 2.5325 11 8 9.2224 2.1658 2.8614 12 7 9.5275 -0.0315 2.8985 13 6 10.7012 0.1011 3.6610 14 6 11.2685 1.3092 4.1047 15 7 12.3510 1.0313 4.7864 16 7 12.5226 -0.3588 4.7964 17 6 13.5468 -1.0428 5.4037 18 1 13.5337 -2.1224 5.4310 19 6 14.6003 -0.3456 5.9834 20 7 14.5604 0.9648 6.0539 21 14 16.0730 -1.2731 6.6620 22 1 17.1412 -1.3276 5.6319 23 1 16.5842 -0.5751 7.8689 24 1 15.6641 -2.6539 7.0247 25 6 11.4909 -0.9130 4.0952 26 7 4.5104 2.0229 1.0850 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 6.7548 2.7987 2.3836 33 1 7.7129 2.9063 0.8874 34 1 6.8507 0.3237 2.2672 35 1 7.8088 0.4313 0.7710 36 1 9.2167 -0.9121 2.6357 37 1 10.8765 2.2979 3.9171 38 1 15.2954 1.4513 6.4588 39 1 11.3321 -1.9666 3.9185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645623460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:49 Heat of formation + Delta-G solvation = 116.235768 kcal Electronic energy + Delta-G solvation = -24686.474065 eV Core-core repulsion = 20761.128646 eV Total energy + Delta-G solvation = -3925.345418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.92745 -39.97250 -38.73128 -36.47890 -34.95513 -34.19698 -33.16831 -31.84878 -30.24788 -30.01310 -29.14007 -27.98305 -25.96985 -24.60845 -23.78044 -21.81027 -20.99141 -20.17881 -19.42714 -18.48270 -17.94456 -17.51001 -16.71835 -16.56202 -15.67544 -15.53272 -15.37327 -15.09237 -14.83154 -14.49921 -14.32161 -14.08659 -13.75291 -13.50076 -13.25772 -13.17034 -12.99385 -12.82008 -12.64602 -12.52158 -11.77204 -11.68291 -11.44190 -11.42953 -11.32225 -11.25610 -10.93946 -10.70379 -10.52854 -10.17789 -10.14240 -9.26346 -9.17224 -8.80993 -8.21471 -8.06314 -6.71471 -6.56623 -4.23440 0.54625 1.05269 1.88803 2.18537 2.47912 2.78153 3.01905 3.05151 3.10443 3.11201 3.51600 3.65596 3.66947 3.88455 4.37837 4.40670 4.57801 4.59318 4.60839 4.63335 4.74346 4.85772 4.92107 5.01039 5.13511 5.18185 5.36088 5.39380 5.50788 5.70669 5.75458 6.23928 6.44880 6.89170 6.95033 7.09757 7.23284 7.82065 7.85602 8.14408 8.27525 8.61101 8.81465 9.37567 9.66593 10.39674 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.031953 B = 0.001661 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.066704 B =16857.832390 C =17404.870950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.226 6.226 3 C 0.000 4.000 4 C 0.177 3.823 5 N -0.370 5.370 6 O 0.086 5.914 7 C 0.196 3.804 8 C -0.013 4.013 9 C -0.134 4.134 10 C 0.502 3.498 11 O -0.536 6.536 12 N -0.622 5.622 13 C -0.062 4.062 14 C -0.032 4.032 15 N -0.262 5.262 16 N -0.143 5.143 17 C -0.325 4.325 18 H 0.116 0.884 19 C 0.047 3.953 20 N -0.769 5.769 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.082 4.082 26 N -0.470 5.470 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.398 0.602 37 H 0.177 0.823 38 H 0.275 0.725 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.727 -1.322 -11.629 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.002 6.002 3 C -0.149 4.149 4 C -0.096 4.096 5 N -0.076 5.076 6 O 0.025 5.975 7 C -0.025 4.025 8 C -0.052 4.052 9 C -0.176 4.176 10 C 0.288 3.712 11 O -0.414 6.414 12 N -0.263 5.263 13 C -0.168 4.168 14 C -0.207 4.207 15 N -0.093 5.093 16 N 0.090 4.910 17 C -0.457 4.457 18 H 0.134 0.866 19 C -0.170 4.170 20 N -0.396 5.396 21 Si 0.758 3.242 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.233 4.233 26 N -0.203 5.203 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.231 0.769 37 H 0.193 0.807 38 H 0.085 0.915 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.326 -0.780 -11.140 24.073 hybrid contribution -1.027 -0.323 -0.323 1.124 sum -22.353 -1.102 -11.463 25.145 Atomic orbital electron populations 1.23463 0.93492 1.07094 1.05306 1.87317 1.07619 1.07204 1.98063 1.21419 0.88147 0.97769 1.07556 1.24673 0.98193 1.02382 0.84312 1.74663 0.89819 1.19613 1.23532 1.85333 1.22466 1.64637 1.25113 1.28968 0.96975 0.94675 0.81840 1.20034 0.87169 0.98874 0.99111 1.21557 0.96650 0.97378 1.01987 1.20009 0.84983 0.84668 0.81565 1.90622 1.69213 1.25716 1.55870 1.42473 1.23809 1.08480 1.51588 1.17271 0.93618 0.94399 1.11491 1.24115 0.95835 0.98040 1.02749 1.78253 1.17598 0.90429 1.23010 1.44546 1.13872 1.04184 1.28429 1.19881 0.98107 0.91733 1.35951 0.86610 1.25641 0.99310 0.95697 0.96388 1.70224 1.30127 1.06252 1.32983 0.85819 0.80230 0.79491 0.78656 1.19641 1.20100 1.18791 1.21275 0.95680 0.96955 1.09423 1.71925 0.99945 1.19726 1.28719 0.90151 0.87479 0.89997 0.86708 0.87285 0.85946 0.86700 0.88161 0.88340 0.76884 0.80654 0.91469 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.76 101.05 1.09 0.54 16 2 S -0.23 -1.93 22.36 -107.50 -2.40 -4.33 16 3 C 0.00 0.00 6.57 36.00 0.24 0.24 16 4 C 0.18 1.96 7.48 -156.37 -1.17 0.79 16 5 N -0.37 -4.40 12.16 30.90 0.38 -4.03 16 6 O 0.09 0.96 11.31 18.10 0.20 1.17 16 7 C 0.20 2.05 7.77 -13.06 -0.10 1.95 16 8 C -0.01 -0.12 5.13 -27.89 -0.14 -0.26 16 9 C -0.13 -1.32 5.68 -27.89 -0.16 -1.48 16 10 C 0.50 7.64 7.80 -10.99 -0.09 7.55 16 11 O -0.54 -10.21 13.13 5.54 0.07 -10.13 16 12 N -0.62 -10.18 5.47 -10.00 -0.05 -10.23 16 13 C -0.06 -1.39 6.90 -83.85 -0.58 -1.96 16 14 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 15 N -0.26 -7.52 10.42 30.80 0.32 -7.20 16 16 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 17 C -0.32 -8.52 10.24 -14.81 -0.15 -8.67 16 18 H 0.12 2.72 7.84 -52.48 -0.41 2.30 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 20 N -0.77 -21.36 11.84 55.50 0.66 -20.70 16 21 Si 0.93 18.78 29.56 -169.99 -5.02 13.76 16 22 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 25 C -0.08 -1.90 11.49 -16.39 -0.19 -2.08 16 26 N -0.47 -5.49 11.55 -9.87 -0.11 -5.60 16 27 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 28 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.12 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.11 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.91 8.83 -40.82 -0.36 4.55 16 37 H 0.18 4.41 5.92 -52.48 -0.31 4.10 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.15 2.77 8.06 -52.48 -0.42 2.35 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -34.91 361.15 -6.54 -41.45 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.44 Total: 7.61 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.53 Total: -3.29 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 1.14 Total: -51.67 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.28 Total: -8.97 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.40 Total: -4.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.91 -6.54 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645623460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.684 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds