Wall clock time and date at job start Tue Mar 31 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 103.00190 * 2 1 4 4 C 1.50698 * 109.47303 * 179.97438 * 3 2 1 5 5 N 1.29952 * 126.28549 * 89.97379 * 4 3 2 6 6 O 1.21299 * 110.24917 * 180.02562 * 5 4 3 7 7 C 1.33643 * 109.81105 * 359.97438 * 6 5 4 8 8 C 1.50704 * 126.54810 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47557 * 270.03262 * 8 7 6 10 10 C 1.50700 * 109.47200 * 180.02562 * 9 8 7 11 11 O 1.21299 * 120.00087 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00002 * 179.97438 * 10 9 8 13 13 C 1.40590 * 120.00322 * 180.02562 * 12 10 9 14 14 C 1.40647 * 126.07766 * 359.69679 * 13 12 10 15 15 N 1.30916 * 108.38860 * 179.81393 * 14 13 12 16 16 N 1.40066 * 108.40216 * 0.44100 * 15 14 13 17 17 C 1.37321 * 126.07124 * 179.69535 * 16 15 14 18 18 H 1.08005 * 120.00142 * 174.15198 * 17 16 15 19 19 C 1.38989 * 119.99886 * 354.16014 * 17 16 15 20 20 N 1.31297 * 119.99823 * 5.93046 * 19 17 16 21 21 Si 1.86805 * 120.00002 * 185.93734 * 19 17 16 22 22 H 1.48504 * 109.47201 * 94.97766 * 21 19 17 23 23 H 1.48497 * 109.46655 * 214.97701 * 21 19 17 24 24 H 1.48499 * 109.47073 * 334.97711 * 21 19 17 25 25 C 1.35676 * 126.08796 * 179.97438 * 13 12 10 26 26 N 1.31126 * 106.89994 * 0.23174 * 7 6 5 27 27 H 1.09000 * 109.47259 * 60.00173 * 1 2 3 28 28 H 1.08997 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47377 * 300.00142 * 1 2 3 30 30 H 1.09009 * 109.47173 * 59.99772 * 3 2 1 31 31 H 1.09000 * 109.47307 * 300.00131 * 3 2 1 32 32 H 1.08995 * 109.46986 * 150.02756 * 8 7 6 33 33 H 1.09002 * 109.46924 * 30.03412 * 8 7 6 34 34 H 1.09002 * 109.47126 * 300.00027 * 9 8 7 35 35 H 1.08995 * 109.47386 * 59.99739 * 9 8 7 36 36 H 0.97007 * 119.99658 * 0.02562 * 12 10 9 37 37 H 1.08004 * 125.81236 * 359.95827 * 14 13 12 38 38 H 0.97000 * 119.99472 * 179.97438 * 20 19 17 39 39 H 1.08004 * 126.24073 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 7 4.4841 2.0234 -1.0466 6 8 5.6424 2.1545 -0.7110 7 6 5.7291 2.1653 0.6226 8 6 6.9879 2.3076 1.4389 9 6 7.5757 0.9224 1.7157 10 6 8.8341 1.0647 2.5325 11 8 9.2224 2.1658 2.8614 12 7 9.5275 -0.0315 2.8985 13 6 10.7012 0.1011 3.6610 14 6 11.2685 1.3092 4.1047 15 7 12.3510 1.0313 4.7864 16 7 12.5226 -0.3588 4.7964 17 6 13.5468 -1.0428 5.4037 18 1 13.5337 -2.1224 5.4310 19 6 14.6003 -0.3456 5.9834 20 7 14.5604 0.9648 6.0539 21 14 16.0730 -1.2731 6.6620 22 1 17.1412 -1.3276 5.6319 23 1 16.5842 -0.5751 7.8689 24 1 15.6641 -2.6539 7.0247 25 6 11.4909 -0.9130 4.0952 26 7 4.5104 2.0229 1.0850 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 6.7548 2.7987 2.3836 33 1 7.7129 2.9063 0.8874 34 1 6.8507 0.3237 2.2672 35 1 7.8088 0.4313 0.7710 36 1 9.2167 -0.9121 2.6357 37 1 10.8765 2.2979 3.9171 38 1 15.2954 1.4513 6.4588 39 1 11.3321 -1.9666 3.9185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645623460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:48 Heat of formation + Delta-G solvation = 90.713798 kcal Electronic energy + Delta-G solvation = -24687.580780 eV Core-core repulsion = 20761.128646 eV Total energy + Delta-G solvation = -3926.452134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.76303 -41.66156 -40.25381 -37.30328 -36.04838 -35.60168 -34.91075 -32.77150 -32.13015 -30.66581 -29.69633 -29.54577 -27.30802 -26.18057 -24.65037 -22.92464 -22.55870 -21.57799 -21.11637 -19.43004 -19.23723 -18.67102 -17.85354 -17.37272 -17.32932 -16.92021 -16.68955 -16.00431 -15.74695 -15.60079 -15.28382 -15.01791 -14.93515 -14.82118 -14.56396 -14.23700 -13.85177 -13.58367 -13.54019 -13.46820 -13.38761 -13.22962 -12.93112 -12.77170 -12.52386 -12.25482 -12.12342 -12.05369 -11.77872 -11.34299 -10.98008 -10.89962 -10.78376 -10.60793 -10.05681 -8.82613 -8.47740 -8.44432 -6.20921 -0.17579 0.34501 1.25619 1.31793 1.41624 1.53108 1.56804 1.59360 1.64226 1.91812 2.10123 2.32027 2.48744 2.58689 2.83109 2.99059 3.10947 3.62814 3.76393 3.99053 4.04503 4.15148 4.28517 4.34262 4.34635 4.48808 4.51676 4.61572 4.67487 4.71307 4.89252 4.91734 4.99080 5.04694 5.14567 5.34047 5.54741 5.99869 6.37119 6.78141 6.81951 7.00378 7.45204 7.51792 7.73702 8.55033 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.031953 B = 0.001661 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.066704 B =16857.832390 C =17404.870950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.288 6.288 3 C 0.008 3.992 4 C 0.175 3.825 5 N -0.388 5.388 6 O 0.082 5.918 7 C 0.205 3.795 8 C -0.008 4.008 9 C -0.117 4.117 10 C 0.504 3.496 11 O -0.575 6.575 12 N -0.617 5.617 13 C -0.044 4.044 14 C -0.057 4.057 15 N -0.314 5.314 16 N -0.171 5.171 17 C -0.356 4.356 18 H 0.139 0.861 19 C -0.006 4.006 20 N -0.825 5.825 21 Si 1.018 2.982 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.243 1.243 25 C -0.080 4.080 26 N -0.488 5.488 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.421 0.579 37 H 0.172 0.828 38 H 0.276 0.724 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.441 -3.317 -12.498 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.064 6.064 3 C -0.141 4.141 4 C -0.098 4.098 5 N -0.096 5.096 6 O 0.022 5.978 7 C -0.015 4.015 8 C -0.047 4.047 9 C -0.158 4.158 10 C 0.292 3.708 11 O -0.454 6.454 12 N -0.262 5.262 13 C -0.150 4.150 14 C -0.233 4.233 15 N -0.145 5.145 16 N 0.060 4.940 17 C -0.487 4.487 18 H 0.157 0.843 19 C -0.217 4.217 20 N -0.453 5.453 21 Si 0.837 3.163 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.166 1.166 25 C -0.231 4.231 26 N -0.221 5.221 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.258 0.742 37 H 0.189 0.811 38 H 0.085 0.915 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -23.088 -2.811 -12.042 26.191 hybrid contribution -0.722 0.332 -0.152 0.809 sum -23.810 -2.479 -12.194 26.865 Atomic orbital electron populations 1.23526 0.89381 1.08068 1.06642 1.87481 1.12223 1.08488 1.98256 1.21529 0.86416 0.97133 1.09026 1.25198 0.99432 1.01341 0.83834 1.74656 0.90132 1.20680 1.24136 1.85313 1.22369 1.64819 1.25281 1.28993 0.96895 0.93965 0.81683 1.20005 0.86966 0.98860 0.98917 1.21489 0.93797 0.98050 1.02433 1.20958 0.85722 0.83533 0.80578 1.90618 1.70391 1.27359 1.57071 1.42470 1.22217 1.10364 1.51164 1.17345 0.94735 0.92737 1.10217 1.24226 0.96165 0.99194 1.03699 1.78138 1.19301 0.92337 1.24768 1.44817 1.15368 1.03785 1.30056 1.20590 0.98545 0.92965 1.36611 0.84325 1.26848 1.02327 0.96435 0.96120 1.70402 1.31433 1.08497 1.34990 0.84600 0.75554 0.78654 0.77534 1.19231 1.20202 1.16624 1.22028 0.94279 0.98963 1.07793 1.71941 1.00489 1.20452 1.29267 0.88718 0.86622 0.88754 0.85338 0.85661 0.86412 0.86047 0.86192 0.85364 0.74179 0.81141 0.91470 0.79658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.76 113.37 1.22 0.52 16 2 S -0.29 -4.52 22.36 -56.49 -1.26 -5.79 16 3 C 0.01 0.11 6.57 71.24 0.47 0.58 16 4 C 0.17 3.62 7.48 138.46 1.04 4.66 16 5 N -0.39 -8.78 12.16 -60.32 -0.73 -9.51 16 6 O 0.08 1.72 11.31 74.84 0.85 2.57 16 7 C 0.20 3.95 7.77 88.38 0.69 4.64 16 8 C -0.01 -0.14 5.13 29.85 0.15 0.01 16 9 C -0.12 -1.96 5.68 29.85 0.17 -1.79 16 10 C 0.50 14.46 7.80 87.66 0.68 15.14 16 11 O -0.57 -21.76 13.13 -3.09 -0.04 -21.80 16 12 N -0.62 -18.90 5.47 -303.94 -1.66 -20.56 16 13 C -0.04 -1.93 6.90 37.73 0.26 -1.67 16 14 C -0.06 -3.03 10.85 85.42 0.93 -2.10 16 15 N -0.31 -18.71 10.42 -56.46 -0.59 -19.29 16 16 N -0.17 -9.41 3.74 -190.01 -0.71 -10.12 16 17 C -0.36 -18.80 10.24 84.01 0.86 -17.94 16 18 H 0.14 6.35 7.84 -2.91 -0.02 6.32 16 19 C -0.01 -0.30 5.50 84.95 0.47 0.16 16 20 N -0.83 -47.62 11.84 21.66 0.26 -47.36 16 21 Si 1.02 38.55 29.56 68.60 2.03 40.58 16 22 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 25 C -0.08 -3.62 11.49 83.37 0.96 -2.66 16 26 N -0.49 -10.67 11.55 -303.19 -3.50 -14.17 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 2.20 8.10 -2.39 -0.02 2.18 16 33 H 0.12 1.97 8.10 -2.39 -0.02 1.95 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.42 8.97 8.83 -92.70 -0.82 8.15 16 37 H 0.17 8.98 5.92 -2.91 -0.02 8.96 16 38 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.19 6.54 8.06 -2.91 -0.02 6.52 16 Total: -1.00 -80.12 361.15 2.81 -77.31 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.29 Total: 28.60 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 7.89 Total: -0.44 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -6.94 Total: -121.02 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.81 Total: -19.24 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -1.26 Total: -5.79 kcal Total: -80.12 2.81 -77.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645623460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.021 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds