Wall clock time and date at job start Tue Mar 31 2020 19:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48494 * 109.47103 * 273.53770 * 3 2 1 5 5 H 1.48498 * 109.46797 * 33.53304 * 3 2 1 6 6 H 1.48496 * 109.47390 * 153.53187 * 3 2 1 7 7 C 1.37878 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00420 * 354.14852 * 7 2 1 9 9 C 1.50702 * 119.99484 * 174.41746 * 7 2 1 10 10 C 1.53001 * 115.55233 * 294.54628 * 9 7 2 11 11 N 1.46497 * 109.47358 * 294.92846 * 10 9 7 12 12 C 1.34773 * 119.99973 * 184.03602 * 11 10 9 13 13 O 1.21282 * 120.00364 * 5.08026 * 12 11 10 14 14 C 1.50704 * 120.00254 * 185.08341 * 12 11 10 15 15 N 1.46492 * 109.47495 * 185.36425 * 14 12 11 16 16 C 1.34780 * 120.00254 * 179.97438 * 15 14 12 17 17 O 1.21516 * 119.99481 * 0.02562 * 16 15 14 18 18 C 1.48164 * 119.99881 * 180.02562 * 16 15 14 19 19 C 1.39265 * 119.71305 * 180.02562 * 18 16 15 20 20 C 1.38747 * 119.03676 * 179.97438 * 19 18 16 21 21 Cl 1.73605 * 120.76513 * 179.97438 * 20 19 18 22 22 C 1.38769 * 118.46533 * 359.97438 * 20 19 18 23 23 C 1.38499 * 119.33111 * 359.97438 * 22 20 19 24 24 N 1.31538 * 120.92479 * 359.74283 * 23 22 20 25 25 C 1.53001 * 117.49661 * 148.88272 * 9 7 2 26 26 C 1.52998 * 117.49900 * 80.22574 * 9 7 2 27 27 H 0.96996 * 119.99733 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46891 * 54.93214 * 10 9 7 29 29 H 1.09006 * 109.47060 * 174.92706 * 10 9 7 30 30 H 0.97003 * 119.99948 * 4.04575 * 11 10 9 31 31 H 1.09004 * 109.46593 * 305.36624 * 14 12 11 32 32 H 1.08997 * 109.47067 * 65.35929 * 14 12 11 33 33 H 0.97006 * 119.99853 * 0.02562 * 15 14 12 34 34 H 1.07992 * 120.48341 * 0.02562 * 19 18 16 35 35 H 1.07990 * 120.33449 * 179.97438 * 22 20 19 36 36 H 1.08004 * 119.53592 * 180.02562 * 23 22 20 37 37 H 1.09003 * 117.50136 * 359.97438 * 25 9 7 38 38 H 1.09001 * 117.50224 * 145.01852 * 25 9 7 39 39 H 1.08997 * 117.49760 * 214.97587 * 26 9 7 40 40 H 1.09003 * 117.49803 * 359.96707 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4220 2.0896 -1.3974 5 1 1.4861 2.6299 0.7734 6 1 3.5822 1.4197 0.6240 7 6 2.0045 -1.1941 0.0005 8 1 1.4687 -2.1270 0.0963 9 6 3.5062 -1.1972 -0.1264 10 6 4.0568 -0.6874 -1.4598 11 7 3.6483 -1.5941 -2.5355 12 6 4.0879 -1.3891 -3.7929 13 8 4.8936 -0.5110 -4.0181 14 6 3.5783 -2.2510 -4.9193 15 7 4.2961 -1.9181 -6.1522 16 6 4.0058 -2.5671 -7.2972 17 8 3.1483 -3.4281 -7.3069 18 6 4.7322 -2.2308 -8.5440 19 6 4.4271 -2.9047 -9.7239 20 6 5.1157 -2.5782 -10.8834 21 17 4.7720 -3.3903 -12.3788 22 6 6.0853 -1.5875 -10.8200 23 6 6.3348 -0.9587 -9.6115 24 7 5.6629 -1.2844 -8.5286 25 6 4.2716 -2.3247 0.5691 26 6 4.3223 -0.9029 1.1338 27 1 -0.4849 0.8400 -0.0004 28 1 3.6648 0.3103 -1.6571 29 1 5.1451 -0.6474 -1.4120 30 1 3.0613 -2.3419 -2.3428 31 1 3.7417 -3.3009 -4.6759 32 1 2.5123 -2.0722 -5.0599 33 1 4.9809 -1.2311 -6.1443 34 1 3.6651 -3.6699 -9.7364 35 1 6.6397 -1.3096 -11.7041 36 1 7.0884 -0.1868 -9.5585 37 1 3.6891 -3.0640 1.1189 38 1 5.1676 -2.7031 0.0770 39 1 5.2516 -0.3464 1.0129 40 1 3.7731 -0.7065 2.0546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645754066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:31 Heat of formation + Delta-G solvation = -14.329871 kcal Electronic energy + Delta-G solvation = -25288.774354 eV Core-core repulsion = 21323.430727 eV Total energy + Delta-G solvation = -3965.343627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07499 -39.76357 -38.84378 -37.26755 -37.12085 -34.64176 -33.59716 -32.75131 -32.23254 -32.06859 -28.79224 -26.54282 -25.28567 -24.38101 -24.02351 -21.71506 -21.01923 -20.22573 -19.41144 -18.73522 -17.46005 -17.10866 -16.52892 -16.20804 -16.01240 -15.83958 -15.40847 -15.27309 -14.88061 -14.83628 -14.39084 -14.15651 -13.99498 -13.54576 -13.13871 -12.88125 -12.82232 -12.80063 -12.62573 -12.31130 -12.03094 -11.65078 -11.12832 -10.78430 -10.68656 -10.64795 -10.33531 -10.09668 -10.05229 -9.83139 -9.82646 -9.52017 -9.27609 -9.21363 -8.86394 -8.56364 -8.44172 -6.22205 -4.25697 0.06492 0.47927 1.33477 2.34722 2.69679 2.84062 3.23971 3.34808 3.35642 3.39932 3.56502 3.76240 4.19532 4.22653 4.33977 4.39409 4.73555 4.80233 4.97626 5.06899 5.12799 5.13594 5.31040 5.33909 5.43541 5.60849 5.87148 5.90397 6.06643 6.12097 6.14957 6.38224 6.42884 6.65138 6.84539 6.94400 7.05576 7.08587 7.41599 7.61374 7.87584 8.00729 8.35718 8.51172 8.79315 9.40869 10.88608 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.002056 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.524013 B =13616.977472 C =13695.451606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.083 3.917 3 Si 0.866 3.134 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.248 1.248 7 C -0.491 4.491 8 H 0.079 0.921 9 C -0.020 4.020 10 C 0.153 3.847 11 N -0.693 5.693 12 C 0.501 3.499 13 O -0.553 6.553 14 C 0.097 3.903 15 N -0.691 5.691 16 C 0.572 3.428 17 O -0.530 6.530 18 C 0.100 3.900 19 C -0.105 4.105 20 C -0.001 4.001 21 Cl -0.043 7.043 22 C -0.144 4.144 23 C 0.116 3.884 24 N -0.451 5.451 25 C -0.180 4.180 26 C -0.184 4.184 27 H 0.266 0.734 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.411 0.589 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.423 0.577 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.506 -4.659 -21.135 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.121 4.121 3 Si 0.693 3.307 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.172 1.172 7 C -0.528 4.528 8 H 0.097 0.903 9 C -0.021 4.021 10 C 0.030 3.970 11 N -0.342 5.342 12 C 0.286 3.714 13 O -0.433 6.433 14 C -0.030 4.030 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.406 6.406 18 C -0.039 4.039 19 C -0.126 4.126 20 C -0.036 4.036 21 Cl -0.014 7.014 22 C -0.165 4.165 23 C -0.043 4.043 24 N -0.162 5.162 25 C -0.217 4.217 26 C -0.222 4.222 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.246 0.754 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.263 0.737 34 H 0.179 0.821 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.380 -4.168 -20.549 24.349 hybrid contribution 0.145 0.528 -0.829 0.993 sum 12.524 -3.640 -21.378 25.042 Atomic orbital electron populations 1.69890 1.06373 1.27339 1.49069 1.24932 0.94523 0.99102 0.93544 0.87039 0.81582 0.83598 0.78492 1.20431 1.21768 1.17192 1.20230 0.86436 0.94653 1.51514 0.90304 1.19617 0.94905 0.99323 0.88273 1.21142 0.97093 0.92508 0.86250 1.45755 1.49783 1.31846 1.06828 1.20338 0.81956 0.84806 0.84308 1.90669 1.34436 1.34509 1.83658 1.21193 0.98413 1.00157 0.83269 1.45521 1.41050 1.40827 1.07169 1.17661 0.82508 0.81768 0.82526 1.90826 1.32317 1.32137 1.85290 1.21109 0.95068 0.93904 0.93775 1.22059 0.99794 1.00429 0.90328 1.21243 0.97563 0.96102 0.88674 1.98419 1.94238 1.77900 1.30846 1.22381 0.97466 0.95620 1.00992 1.22913 0.97043 0.97796 0.86566 1.67629 1.04942 1.12316 1.31352 1.22810 1.01476 0.91894 1.05494 1.23033 1.01181 0.98124 0.99868 0.92400 0.92308 0.92949 0.75376 0.88079 0.87552 0.73704 0.82145 0.82996 0.80763 0.89534 0.90868 0.91091 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.69 24.97 -169.99 -4.24 16.44 16 4 H -0.28 -6.76 7.03 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.25 -5.56 5.72 56.52 0.32 -5.23 16 7 C -0.49 -12.46 9.16 -34.44 -0.32 -12.77 16 8 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 9 C -0.02 -0.42 0.84 -155.66 -0.13 -0.55 16 10 C 0.15 3.11 5.15 -4.04 -0.02 3.09 16 11 N -0.69 -12.25 5.48 -60.29 -0.33 -12.58 16 12 C 0.50 8.43 7.89 -10.98 -0.09 8.34 16 13 O -0.55 -10.82 15.67 5.56 0.09 -10.74 16 14 C 0.10 1.32 6.16 -5.20 -0.03 1.29 16 15 N -0.69 -9.44 5.51 -62.33 -0.34 -9.78 16 16 C 0.57 7.75 7.81 -12.18 -0.10 7.65 16 17 O -0.53 -8.24 16.32 5.35 0.09 -8.15 16 18 C 0.10 1.14 6.75 -83.02 -0.56 0.58 16 19 C -0.10 -1.02 9.45 -39.01 -0.37 -1.38 16 20 C 0.00 -0.01 6.37 -39.20 -0.25 -0.26 16 21 Cl -0.04 -0.31 29.02 -51.86 -1.50 -1.81 16 22 C -0.14 -0.89 9.94 -39.29 -0.39 -1.28 16 23 C 0.12 0.83 11.18 -17.58 -0.20 0.64 16 24 N -0.45 -4.73 9.54 -9.82 -0.09 -4.82 16 25 C -0.18 -3.30 9.96 -26.69 -0.27 -3.56 16 26 C -0.18 -3.61 8.03 -26.70 -0.21 -3.83 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.06 1.33 5.06 -51.93 -0.26 1.06 16 29 H 0.05 1.01 8.07 -51.93 -0.42 0.60 16 30 H 0.41 6.72 8.34 -40.82 -0.34 6.38 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.42 5.93 6.78 -40.82 -0.28 5.65 16 34 H 0.16 1.52 7.64 -52.49 -0.40 1.12 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -31.40 361.70 -7.87 -39.27 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.72 Total: 11.60 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -3.02 Total: 0.08 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.01 Total: -52.14 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.17 Total: -18.89 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.24 Total: 16.44 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.50 Total: -1.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.40 -7.87 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645754066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.939 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds