Wall clock time and date at job start Tue Mar 31 2020 19:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48494 * 109.47103 * 273.53770 * 3 2 1 5 5 H 1.48498 * 109.46797 * 33.53304 * 3 2 1 6 6 H 1.48496 * 109.47390 * 153.53187 * 3 2 1 7 7 C 1.37878 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00420 * 354.14852 * 7 2 1 9 9 C 1.50702 * 119.99484 * 174.41746 * 7 2 1 10 10 C 1.53001 * 115.55233 * 294.54628 * 9 7 2 11 11 N 1.46497 * 109.47358 * 294.92846 * 10 9 7 12 12 C 1.34773 * 119.99973 * 184.03602 * 11 10 9 13 13 O 1.21282 * 120.00364 * 5.08026 * 12 11 10 14 14 C 1.50704 * 120.00254 * 185.08341 * 12 11 10 15 15 N 1.46492 * 109.47495 * 185.36425 * 14 12 11 16 16 C 1.34780 * 120.00254 * 179.97438 * 15 14 12 17 17 O 1.21516 * 119.99481 * 0.02562 * 16 15 14 18 18 C 1.48164 * 119.99881 * 180.02562 * 16 15 14 19 19 C 1.39265 * 119.71305 * 180.02562 * 18 16 15 20 20 C 1.38747 * 119.03676 * 179.97438 * 19 18 16 21 21 Cl 1.73605 * 120.76513 * 179.97438 * 20 19 18 22 22 C 1.38769 * 118.46533 * 359.97438 * 20 19 18 23 23 C 1.38499 * 119.33111 * 359.97438 * 22 20 19 24 24 N 1.31538 * 120.92479 * 359.74283 * 23 22 20 25 25 C 1.53001 * 117.49661 * 148.88272 * 9 7 2 26 26 C 1.52998 * 117.49900 * 80.22574 * 9 7 2 27 27 H 0.96996 * 119.99733 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46891 * 54.93214 * 10 9 7 29 29 H 1.09006 * 109.47060 * 174.92706 * 10 9 7 30 30 H 0.97003 * 119.99948 * 4.04575 * 11 10 9 31 31 H 1.09004 * 109.46593 * 305.36624 * 14 12 11 32 32 H 1.08997 * 109.47067 * 65.35929 * 14 12 11 33 33 H 0.97006 * 119.99853 * 0.02562 * 15 14 12 34 34 H 1.07992 * 120.48341 * 0.02562 * 19 18 16 35 35 H 1.07990 * 120.33449 * 179.97438 * 22 20 19 36 36 H 1.08004 * 119.53592 * 180.02562 * 23 22 20 37 37 H 1.09003 * 117.50136 * 359.97438 * 25 9 7 38 38 H 1.09001 * 117.50224 * 145.01852 * 25 9 7 39 39 H 1.08997 * 117.49760 * 214.97587 * 26 9 7 40 40 H 1.09003 * 117.49803 * 359.96707 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4220 2.0896 -1.3974 5 1 1.4861 2.6299 0.7734 6 1 3.5822 1.4197 0.6240 7 6 2.0045 -1.1941 0.0005 8 1 1.4687 -2.1270 0.0963 9 6 3.5062 -1.1972 -0.1264 10 6 4.0568 -0.6874 -1.4598 11 7 3.6483 -1.5941 -2.5355 12 6 4.0879 -1.3891 -3.7929 13 8 4.8936 -0.5110 -4.0181 14 6 3.5783 -2.2510 -4.9193 15 7 4.2961 -1.9181 -6.1522 16 6 4.0058 -2.5671 -7.2972 17 8 3.1483 -3.4281 -7.3069 18 6 4.7322 -2.2308 -8.5440 19 6 4.4271 -2.9047 -9.7239 20 6 5.1157 -2.5782 -10.8834 21 17 4.7720 -3.3903 -12.3788 22 6 6.0853 -1.5875 -10.8200 23 6 6.3348 -0.9587 -9.6115 24 7 5.6629 -1.2844 -8.5286 25 6 4.2716 -2.3247 0.5691 26 6 4.3223 -0.9029 1.1338 27 1 -0.4849 0.8400 -0.0004 28 1 3.6648 0.3103 -1.6571 29 1 5.1451 -0.6474 -1.4120 30 1 3.0613 -2.3419 -2.3428 31 1 3.7417 -3.3009 -4.6759 32 1 2.5123 -2.0722 -5.0599 33 1 4.9809 -1.2311 -6.1443 34 1 3.6651 -3.6699 -9.7364 35 1 6.6397 -1.3096 -11.7041 36 1 7.0884 -0.1868 -9.5585 37 1 3.6891 -3.0640 1.1189 38 1 5.1676 -2.7031 0.0770 39 1 5.2516 -0.3464 1.0129 40 1 3.7731 -0.7065 2.0546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645754066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:30 Heat of formation + Delta-G solvation = -37.406959 kcal Electronic energy + Delta-G solvation = -25289.775051 eV Core-core repulsion = 21323.430727 eV Total energy + Delta-G solvation = -3966.344324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88497 -40.97237 -39.96329 -38.71220 -37.85261 -35.75987 -35.07564 -34.26190 -33.41910 -32.76483 -30.02532 -28.17165 -26.83215 -25.35994 -24.67538 -23.24137 -21.98109 -21.57834 -21.06314 -19.82846 -18.63398 -18.20344 -17.66717 -17.35442 -17.23013 -16.89187 -16.79792 -16.39863 -16.10806 -16.04077 -15.37178 -15.13354 -14.95133 -14.88395 -14.83975 -14.38681 -14.13673 -13.96445 -13.52968 -13.45230 -13.28974 -13.00552 -12.67473 -12.25063 -12.18570 -12.07387 -11.62743 -11.49478 -11.17853 -10.96027 -10.83708 -10.70427 -10.67539 -10.55774 -10.34586 -10.29263 -9.96088 -8.30353 -6.34604 -0.63276 -0.14172 0.73578 1.32219 1.39221 1.44772 1.48893 1.51886 1.64829 2.34050 2.36021 2.60854 2.95128 3.00345 3.33731 3.53978 3.64340 3.69899 3.74066 4.02444 4.15971 4.24336 4.32512 4.34023 4.36981 4.47351 4.53644 4.54462 4.75158 4.78375 4.93901 5.06368 5.09450 5.27397 5.30107 5.45434 5.55093 5.69400 6.18883 6.30470 6.52562 6.60082 6.74024 6.91464 7.13367 7.34335 8.83825 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.002056 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.524013 B =13616.977472 C =13695.451606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.031 3.969 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.221 1.221 7 C -0.475 4.475 8 H 0.046 0.954 9 C -0.045 4.045 10 C 0.160 3.840 11 N -0.694 5.694 12 C 0.506 3.494 13 O -0.579 6.579 14 C 0.103 3.897 15 N -0.693 5.693 16 C 0.571 3.429 17 O -0.558 6.558 18 C 0.076 3.924 19 C -0.110 4.110 20 C -0.007 4.007 21 Cl -0.036 7.036 22 C -0.122 4.122 23 C 0.116 3.884 24 N -0.473 5.473 25 C -0.154 4.154 26 C -0.181 4.181 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.416 0.584 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.422 0.578 34 H 0.155 0.845 35 H 0.188 0.812 36 H 0.210 0.790 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.478 -4.491 -22.545 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.168 4.168 3 Si 0.742 3.258 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.143 1.143 7 C -0.513 4.513 8 H 0.064 0.936 9 C -0.046 4.046 10 C 0.036 3.964 11 N -0.344 5.344 12 C 0.292 3.708 13 O -0.460 6.460 14 C -0.024 4.024 15 N -0.346 5.346 16 C 0.357 3.643 17 O -0.436 6.436 18 C -0.061 4.061 19 C -0.131 4.131 20 C -0.042 4.042 21 Cl -0.007 7.007 22 C -0.142 4.142 23 C -0.043 4.043 24 N -0.185 5.185 25 C -0.191 4.191 26 C -0.219 4.219 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.252 0.748 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.262 0.738 34 H 0.172 0.828 35 H 0.206 0.794 36 H 0.226 0.774 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.372 -4.026 -21.950 27.098 hybrid contribution -0.730 0.409 -0.482 0.965 sum 14.643 -3.617 -22.432 27.031 Atomic orbital electron populations 1.70019 1.08036 1.27817 1.52103 1.25614 0.94960 1.02212 0.93998 0.86234 0.81636 0.79976 0.77908 1.21356 1.22559 1.14321 1.20376 0.88881 0.92913 1.49086 0.93615 1.19471 0.92606 1.02892 0.89672 1.20932 0.97690 0.91641 0.86125 1.45728 1.50039 1.31734 1.06863 1.20727 0.81152 0.84487 0.84449 1.90652 1.35643 1.35694 1.84014 1.21165 0.98324 1.00533 0.82333 1.45538 1.40987 1.40888 1.07236 1.18019 0.82140 0.81064 0.83088 1.90796 1.33633 1.33346 1.85829 1.20769 0.96500 0.95706 0.93133 1.22031 1.00068 1.00342 0.90707 1.21347 0.97842 0.96656 0.88369 1.98425 1.94269 1.77886 1.30075 1.22790 0.95965 0.93592 1.01874 1.23552 0.96808 0.98054 0.85934 1.67587 1.05308 1.12410 1.33170 1.22853 1.01457 0.91105 1.03666 1.23082 1.01328 0.99421 0.98118 0.92716 0.94800 0.91435 0.74751 0.86008 0.87283 0.73848 0.82756 0.79441 0.77379 0.89695 0.88018 0.88783 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.96 21.45 0.30 -55.81 16 2 C 0.03 1.69 5.47 84.65 0.46 2.15 16 3 Si 0.92 42.92 24.97 68.60 1.71 44.63 16 4 H -0.29 -13.74 7.03 99.48 0.70 -13.04 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.22 -9.23 5.72 99.48 0.57 -8.66 16 7 C -0.48 -24.27 9.16 25.60 0.23 -24.04 16 8 H 0.05 2.59 8.06 -2.91 -0.02 2.56 16 9 C -0.05 -1.84 0.84 -52.93 -0.04 -1.89 16 10 C 0.16 6.22 5.15 86.38 0.44 6.67 16 11 N -0.69 -23.85 5.48 -463.06 -2.54 -26.38 16 12 C 0.51 16.60 7.89 87.66 0.69 17.29 16 13 O -0.58 -22.18 15.67 -3.04 -0.05 -22.23 16 14 C 0.10 2.77 6.16 85.64 0.53 3.30 16 15 N -0.69 -18.81 5.51 -469.40 -2.59 -21.40 16 16 C 0.57 15.62 7.81 86.88 0.68 16.30 16 17 O -0.56 -17.68 16.32 -3.77 -0.06 -17.74 16 18 C 0.08 1.71 6.75 41.89 0.28 2.00 16 19 C -0.11 -2.09 9.45 22.64 0.21 -1.87 16 20 C -0.01 -0.10 6.37 22.52 0.14 0.04 16 21 Cl -0.04 -0.45 29.02 -2.72 -0.08 -0.52 16 22 C -0.12 -1.12 9.94 22.46 0.22 -0.90 16 23 C 0.12 1.34 11.18 84.80 0.95 2.29 16 24 N -0.47 -9.34 9.54 -184.97 -1.77 -11.10 16 25 C -0.15 -5.19 9.96 30.62 0.30 -4.89 16 26 C -0.18 -6.60 8.03 30.62 0.25 -6.35 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.03 1.49 5.06 -2.39 -0.01 1.48 16 29 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 30 H 0.42 13.33 8.34 -92.71 -0.77 12.55 16 31 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.42 11.75 6.78 -92.70 -0.63 11.12 16 34 H 0.15 3.00 7.64 -2.91 -0.02 2.98 16 35 H 0.19 0.37 8.06 -2.92 -0.02 0.34 16 36 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -69.51 361.70 -0.15 -69.65 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.44 Total: 30.80 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.36 Total: 10.10 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -6.59 Total: -114.69 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.11 Total: -39.96 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.71 Total: 44.63 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.52 kcal Total: -69.51 -0.15 -69.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645754066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.247 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds