Wall clock time and date at job start Tue Mar 31 2020 20:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.47429 * 125.58396 * 2 1 4 4 C 1.53006 * 103.21058 * 179.97438 * 3 2 1 5 5 C 1.52302 * 116.34897 * 228.66913 * 4 3 2 6 6 N 1.47282 * 87.68137 * 217.93267 * 5 4 3 7 7 C 1.34776 * 135.92157 * 206.11155 * 6 5 4 8 8 O 1.21591 * 120.00155 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99920 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47137 * 35.00186 * 10 9 7 12 12 C 1.50702 * 109.46886 * 155.00355 * 10 9 7 13 13 H 1.07996 * 120.00608 * 84.75659 * 12 10 9 14 14 C 1.37884 * 119.99394 * 264.75385 * 12 10 9 15 15 N 1.31515 * 119.99200 * 184.43268 * 14 12 10 16 16 Si 1.86795 * 120.00489 * 4.43897 * 14 12 10 17 17 H 1.48503 * 109.46962 * 270.06131 * 16 14 12 18 18 H 1.48503 * 109.46958 * 30.06053 * 16 14 12 19 19 H 1.48495 * 109.47321 * 150.05917 * 16 14 12 20 20 C 1.52999 * 109.46996 * 275.00089 * 10 9 7 21 21 F 1.39898 * 109.47178 * 305.13653 * 20 10 9 22 22 F 1.39903 * 109.47420 * 65.14066 * 20 10 9 23 23 F 1.39906 * 109.46869 * 185.14115 * 20 10 9 24 24 C 1.47280 * 88.15621 * 26.36524 * 6 5 4 25 25 O 1.44489 * 105.29361 * 0.02562 * 4 3 2 26 26 C 1.34194 * 125.57997 * 179.97438 * 2 1 3 27 27 O 1.21510 * 123.10538 * 0.03837 * 26 2 1 28 28 H 1.08997 * 109.46889 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46858 * 300.01905 * 1 2 3 30 30 H 1.08997 * 109.46908 * 60.01973 * 1 2 3 31 31 H 1.08998 * 110.67339 * 61.52649 * 3 2 1 32 32 H 1.09001 * 110.67047 * 298.38636 * 3 2 1 33 33 H 1.09003 * 113.51806 * 103.22798 * 5 4 3 34 34 H 1.09004 * 113.51839 * 332.63341 * 5 4 3 35 35 H 0.96994 * 120.00173 * 0.02562 * 9 7 6 36 36 H 0.97009 * 119.99473 * 180.02562 * 15 14 12 37 37 H 1.09004 * 113.52060 * 88.33196 * 24 6 5 38 38 H 1.09002 * 113.52070 * 218.93144 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3230 1.1990 0.0000 4 6 3.7379 0.6166 0.0007 5 6 4.7057 1.1930 1.0257 6 7 5.7590 1.0879 0.0017 7 6 7.1001 0.9539 0.0025 8 8 7.7046 0.8940 1.0558 9 7 7.7713 0.8864 -1.1643 10 6 9.2291 0.7414 -1.1635 11 1 9.5319 0.1195 -0.3212 12 6 9.6702 0.0934 -2.4506 13 1 9.8306 0.6968 -3.3318 14 6 9.8689 -1.2700 -2.5031 15 7 10.3371 -1.8244 -3.6000 16 14 9.4731 -2.3296 -1.0166 17 1 10.6749 -2.4368 -0.1509 18 1 8.3634 -1.7100 -0.2484 19 1 9.0662 -3.6844 -1.4685 20 6 9.8788 2.1210 -1.0384 21 9 9.3994 2.9560 -2.0534 22 9 9.5639 2.6735 0.2077 23 9 11.2672 1.9949 -1.1553 24 6 4.7075 1.1994 -1.0234 25 8 3.5598 -0.8173 0.0004 26 6 2.2459 -1.0914 0.0005 27 8 1.8042 -2.2234 0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 2.1515 1.7948 0.8964 32 1 2.1526 1.7940 -0.8972 33 1 4.8677 0.5422 1.8849 34 1 4.4769 2.2200 1.3105 35 1 7.2892 0.9346 -2.0046 36 1 10.4766 -2.7837 -3.6370 37 1 4.4790 2.2282 -1.3021 38 1 4.8710 0.5540 -1.8864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646329860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:50 Heat of formation + Delta-G solvation = -193.323817 kcal Electronic energy + Delta-G solvation = -30548.109980 eV Core-core repulsion = 25592.438688 eV Total energy + Delta-G solvation = -4955.671292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.05002 -46.57692 -46.52556 -42.29766 -39.90128 -38.18620 -36.54224 -35.81328 -34.73679 -32.59749 -30.78768 -29.18258 -27.70603 -26.50118 -25.68852 -24.95969 -22.50266 -21.58016 -20.88666 -19.57637 -18.44731 -17.58738 -17.50423 -17.38281 -17.33854 -16.74737 -16.62446 -16.37719 -16.06487 -15.63021 -14.95242 -14.61250 -14.55710 -14.16824 -14.02533 -13.55967 -13.49399 -13.39703 -13.17081 -13.09906 -13.00170 -12.90261 -12.82218 -12.74645 -12.69957 -12.57288 -12.08708 -11.93947 -11.75394 -11.09210 -10.91633 -10.73457 -10.63113 -10.13716 -9.80099 -9.77685 -9.35141 -9.01530 -8.81448 -8.32242 -6.55077 -4.70976 2.10939 2.41803 2.54163 2.86779 3.15389 3.24529 3.37018 3.47763 3.59272 3.78290 3.90332 4.11142 4.13898 4.29105 4.66423 4.75420 4.79426 4.85724 4.98116 5.03858 5.13053 5.16797 5.18883 5.22196 5.29816 5.30477 5.44373 5.57459 5.71235 5.97655 6.26821 6.87350 7.02832 7.15621 7.46667 7.72957 7.89261 8.49472 8.50307 9.00714 9.06703 10.52716 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003845 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.546374 B = 7281.358334 C = 8365.273512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.637 5.637 3 C 0.090 3.910 4 C 0.048 3.952 5 C 0.131 3.869 6 N -0.665 5.665 7 C 0.728 3.272 8 O -0.582 6.582 9 N -0.722 5.722 10 C 0.221 3.779 11 H 0.089 0.911 12 C -0.535 4.535 13 H 0.094 0.906 14 C 0.101 3.899 15 N -0.856 5.856 16 Si 0.868 3.132 17 H -0.267 1.267 18 H -0.252 1.252 19 H -0.279 1.279 20 C 0.438 3.562 21 F -0.194 7.194 22 F -0.195 7.195 23 F -0.181 7.181 24 C 0.106 3.894 25 O -0.287 6.287 26 C 0.642 3.358 27 O -0.518 6.518 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.396 0.604 36 H 0.276 0.724 37 H 0.109 0.891 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.616 9.473 4.995 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.386 5.386 3 C -0.034 4.034 4 C 0.008 3.992 5 C 0.007 3.993 6 N -0.406 5.406 7 C 0.432 3.568 8 O -0.459 6.459 9 N -0.377 5.377 10 C 0.118 3.882 11 H 0.107 0.893 12 C -0.573 4.573 13 H 0.112 0.888 14 C -0.109 4.109 15 N -0.488 5.488 16 Si 0.693 3.307 17 H -0.192 1.192 18 H -0.175 1.175 19 H -0.205 1.205 20 C 0.382 3.618 21 F -0.175 7.175 22 F -0.177 7.177 23 F -0.162 7.162 24 C -0.018 4.018 25 O -0.196 6.196 26 C 0.396 3.604 27 O -0.402 6.402 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.814 8.474 5.664 20.524 hybrid contribution -0.364 -0.211 0.217 0.473 sum -18.178 8.264 5.880 20.816 Atomic orbital electron populations 1.21510 0.74803 1.04406 1.01935 1.48049 1.07493 1.05817 1.77267 1.22538 0.86798 0.88909 1.05153 1.23640 0.94793 0.79187 1.01535 1.22894 0.81770 1.01155 0.93481 1.48657 1.03512 1.79256 1.09212 1.15726 0.78203 0.77249 0.85620 1.90907 1.65579 1.58479 1.30973 1.46826 1.08097 1.76640 1.06102 1.19932 0.78147 0.87622 1.02537 0.89319 1.20738 1.47635 0.93832 0.95094 0.88823 1.24997 0.91971 0.97648 0.96322 1.69858 1.39254 1.12587 1.27140 0.86921 0.80777 0.80150 0.82866 1.19189 1.17508 1.20455 1.21724 0.77364 0.90350 0.72384 1.93056 1.88199 1.75099 1.61171 1.93146 1.92715 1.88058 1.43750 1.93113 1.31220 1.96190 1.95712 1.23181 0.83364 1.01396 0.93886 1.87353 1.23148 1.23027 1.86074 1.18729 0.80041 0.85509 0.76146 1.91048 1.73464 1.20647 1.55048 0.89329 0.91510 0.91450 0.88071 0.87988 0.88981 0.87599 0.76911 0.91359 0.87320 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 11.24 59.85 0.67 1.28 16 2 N -0.64 -5.39 3.38 -186.96 -0.63 -6.03 16 3 C 0.09 0.48 7.23 -3.53 -0.03 0.46 16 4 C 0.05 0.46 1.91 -91.19 -0.17 0.28 16 5 C 0.13 1.39 8.13 -7.82 -0.06 1.33 16 6 N -0.66 -9.92 3.69 -191.09 -0.71 -10.62 16 7 C 0.73 14.77 8.45 -86.92 -0.73 14.04 16 8 O -0.58 -13.92 15.69 5.29 0.08 -13.84 16 9 N -0.72 -14.85 4.91 -59.81 -0.29 -15.14 16 10 C 0.22 5.17 1.54 -69.08 -0.11 5.06 16 11 H 0.09 2.23 5.07 -51.93 -0.26 1.97 16 12 C -0.54 -13.73 8.52 -34.44 -0.29 -14.02 16 13 H 0.09 2.57 8.00 -52.49 -0.42 2.15 16 14 C 0.10 2.68 5.47 -17.82 -0.10 2.59 16 15 N -0.86 -23.72 13.96 55.43 0.77 -22.95 16 16 Si 0.87 20.90 26.94 -169.99 -4.58 16.33 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.25 -6.25 6.95 56.52 0.39 -5.86 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.44 9.82 2.83 37.16 0.11 9.93 16 21 F -0.19 -4.12 16.93 2.25 0.04 -4.08 16 22 F -0.20 -4.36 15.83 2.25 0.04 -4.32 16 23 F -0.18 -4.15 16.89 2.25 0.04 -4.11 16 24 C 0.11 1.03 7.81 -7.68 -0.06 0.97 16 25 O -0.29 -4.10 10.98 -38.97 -0.43 -4.53 16 26 C 0.64 8.71 8.86 53.79 0.48 9.19 16 27 O -0.52 -8.99 17.32 -19.09 -0.33 -9.33 16 28 H 0.09 0.60 7.54 -51.93 -0.39 0.21 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.29 7.99 -51.93 -0.42 -0.13 16 32 H 0.10 0.29 7.99 -51.93 -0.41 -0.13 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 7.26 8.30 -40.82 -0.34 6.92 16 36 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -36.16 341.74 -5.08 -41.23 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.92 Total: 1.12 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: -0.30 Total: 31.11 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.86 Total: -54.74 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.68 Total: -27.69 kcal Atomic # 9 Polarization: -12.62 SS G_CDS: 0.11 Total: -12.51 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.58 Total: 16.33 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.16 -5.08 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646329860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.092 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds