Wall clock time and date at job start Tue Mar 31 2020 20:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.47429 * 125.58396 * 2 1 4 4 C 1.53006 * 103.21058 * 179.97438 * 3 2 1 5 5 C 1.52302 * 116.34897 * 228.66913 * 4 3 2 6 6 N 1.47282 * 87.68137 * 217.93267 * 5 4 3 7 7 C 1.34776 * 135.92157 * 206.11155 * 6 5 4 8 8 O 1.21591 * 120.00155 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99920 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47137 * 35.00186 * 10 9 7 12 12 C 1.50702 * 109.46886 * 155.00355 * 10 9 7 13 13 H 1.07996 * 120.00608 * 84.75659 * 12 10 9 14 14 C 1.37884 * 119.99394 * 264.75385 * 12 10 9 15 15 N 1.31515 * 119.99200 * 184.43268 * 14 12 10 16 16 Si 1.86795 * 120.00489 * 4.43897 * 14 12 10 17 17 H 1.48503 * 109.46962 * 270.06131 * 16 14 12 18 18 H 1.48503 * 109.46958 * 30.06053 * 16 14 12 19 19 H 1.48495 * 109.47321 * 150.05917 * 16 14 12 20 20 C 1.52999 * 109.46996 * 275.00089 * 10 9 7 21 21 F 1.39898 * 109.47178 * 305.13653 * 20 10 9 22 22 F 1.39903 * 109.47420 * 65.14066 * 20 10 9 23 23 F 1.39906 * 109.46869 * 185.14115 * 20 10 9 24 24 C 1.47280 * 88.15621 * 26.36524 * 6 5 4 25 25 O 1.44489 * 105.29361 * 0.02562 * 4 3 2 26 26 C 1.34194 * 125.57997 * 179.97438 * 2 1 3 27 27 O 1.21510 * 123.10538 * 0.03837 * 26 2 1 28 28 H 1.08997 * 109.46889 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46858 * 300.01905 * 1 2 3 30 30 H 1.08997 * 109.46908 * 60.01973 * 1 2 3 31 31 H 1.08998 * 110.67339 * 61.52649 * 3 2 1 32 32 H 1.09001 * 110.67047 * 298.38636 * 3 2 1 33 33 H 1.09003 * 113.51806 * 103.22798 * 5 4 3 34 34 H 1.09004 * 113.51839 * 332.63341 * 5 4 3 35 35 H 0.96994 * 120.00173 * 0.02562 * 9 7 6 36 36 H 0.97009 * 119.99473 * 180.02562 * 15 14 12 37 37 H 1.09004 * 113.52060 * 88.33196 * 24 6 5 38 38 H 1.09002 * 113.52070 * 218.93144 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3230 1.1990 0.0000 4 6 3.7379 0.6166 0.0007 5 6 4.7057 1.1930 1.0257 6 7 5.7590 1.0879 0.0017 7 6 7.1001 0.9539 0.0025 8 8 7.7046 0.8940 1.0558 9 7 7.7713 0.8864 -1.1643 10 6 9.2291 0.7414 -1.1635 11 1 9.5319 0.1195 -0.3212 12 6 9.6702 0.0934 -2.4506 13 1 9.8306 0.6968 -3.3318 14 6 9.8689 -1.2700 -2.5031 15 7 10.3371 -1.8244 -3.6000 16 14 9.4731 -2.3296 -1.0166 17 1 10.6749 -2.4368 -0.1509 18 1 8.3634 -1.7100 -0.2484 19 1 9.0662 -3.6844 -1.4685 20 6 9.8788 2.1210 -1.0384 21 9 9.3994 2.9560 -2.0534 22 9 9.5639 2.6735 0.2077 23 9 11.2672 1.9949 -1.1553 24 6 4.7075 1.1994 -1.0234 25 8 3.5598 -0.8173 0.0004 26 6 2.2459 -1.0914 0.0005 27 8 1.8042 -2.2234 0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 2.1515 1.7948 0.8964 32 1 2.1526 1.7940 -0.8972 33 1 4.8677 0.5422 1.8849 34 1 4.4769 2.2200 1.3105 35 1 7.2892 0.9346 -2.0046 36 1 10.4766 -2.7837 -3.6370 37 1 4.4790 2.2282 -1.3021 38 1 4.8710 0.5540 -1.8864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646329860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:49 Heat of formation + Delta-G solvation = -222.132080 kcal Electronic energy + Delta-G solvation = -30549.359200 eV Core-core repulsion = 25592.438688 eV Total energy + Delta-G solvation = -4956.920512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.86365 -48.36748 -48.35273 -43.14887 -41.12684 -39.48363 -37.66294 -36.55595 -36.51744 -34.53835 -32.03779 -30.42527 -28.57298 -27.33602 -26.91971 -26.50275 -23.51368 -23.04233 -22.07038 -21.00513 -19.99840 -19.34025 -18.97443 -18.57285 -18.43211 -18.22033 -18.14198 -17.40783 -17.25974 -16.91334 -16.30717 -16.02530 -15.43654 -15.27123 -15.17170 -15.03619 -15.01696 -14.84330 -14.81424 -14.67099 -14.55345 -14.49980 -14.47456 -14.02796 -13.70203 -13.37195 -13.34554 -13.04331 -12.85446 -12.82384 -12.61921 -12.08682 -11.96957 -11.85239 -11.51157 -11.37911 -11.04673 -10.32040 -9.94311 -9.69537 -8.61075 -6.78187 1.15546 1.27298 1.32053 1.40421 1.44382 1.47675 1.89433 2.11205 2.19094 2.22386 2.59133 2.85782 2.97625 3.10345 3.34318 3.36709 3.54639 3.66027 3.92847 4.21724 4.35430 4.41218 4.45052 4.51150 4.52926 4.58741 4.71130 4.75408 4.91379 4.92736 4.98709 5.35069 5.45593 5.81512 6.19525 6.22089 6.39761 6.83900 6.95346 6.99803 7.53671 8.51054 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003845 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.546374 B = 7281.358334 C = 8365.273512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.624 5.624 3 C 0.099 3.901 4 C 0.048 3.952 5 C 0.129 3.871 6 N -0.679 5.679 7 C 0.723 3.277 8 O -0.628 6.628 9 N -0.721 5.721 10 C 0.229 3.771 11 H 0.071 0.929 12 C -0.533 4.533 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.893 5.893 16 Si 0.916 3.084 17 H -0.264 1.264 18 H -0.267 1.267 19 H -0.274 1.274 20 C 0.442 3.558 21 F -0.184 7.184 22 F -0.192 7.192 23 F -0.185 7.185 24 C 0.106 3.894 25 O -0.328 6.328 26 C 0.631 3.369 27 O -0.576 6.576 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.158 0.842 35 H 0.407 0.593 36 H 0.281 0.719 37 H 0.165 0.835 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 12.175 5.393 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.372 5.372 3 C -0.023 4.023 4 C 0.009 3.991 5 C 0.007 3.993 6 N -0.418 5.418 7 C 0.426 3.574 8 O -0.509 6.509 9 N -0.376 5.376 10 C 0.123 3.877 11 H 0.089 0.911 12 C -0.571 4.571 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.741 3.259 17 H -0.189 1.189 18 H -0.191 1.191 19 H -0.199 1.199 20 C 0.386 3.614 21 F -0.166 7.166 22 F -0.173 7.173 23 F -0.167 7.167 24 C -0.015 4.015 25 O -0.238 6.238 26 C 0.385 3.615 27 O -0.464 6.464 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.176 0.824 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.182 0.818 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.617 11.237 6.044 24.246 hybrid contribution 0.374 -0.920 0.124 1.001 sum -20.243 10.317 6.167 23.542 Atomic orbital electron populations 1.21805 0.72818 1.03880 1.04707 1.48247 1.08546 1.05323 1.75043 1.22916 0.82583 0.87570 1.09193 1.23800 0.97390 0.77308 1.00590 1.23367 0.80095 1.03669 0.92199 1.48657 1.02509 1.77535 1.13149 1.15713 0.80073 0.77229 0.84395 1.90863 1.67483 1.60395 1.32128 1.46184 1.07051 1.77252 1.07155 1.19583 0.79674 0.87893 1.00507 0.91132 1.20687 1.47684 0.93587 0.95139 0.90925 1.25431 0.92086 0.98548 0.97677 1.69908 1.41212 1.13132 1.28477 0.86191 0.79989 0.79142 0.80626 1.18885 1.19104 1.19902 1.21503 0.77070 0.90150 0.72670 1.93069 1.88055 1.74712 1.60771 1.93151 1.92674 1.87921 1.43596 1.93105 1.31579 1.96224 1.95752 1.23681 0.81006 1.04294 0.92563 1.87295 1.24074 1.26329 1.86125 1.18985 0.80151 0.86032 0.76294 1.90986 1.74347 1.23200 1.57877 0.91623 0.88654 0.88609 0.84087 0.83809 0.91367 0.82424 0.75662 0.90956 0.81817 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 11.24 127.77 1.44 2.21 16 2 N -0.62 -8.48 3.38 -976.70 -3.30 -11.78 16 3 C 0.10 0.49 7.23 86.20 0.62 1.11 16 4 C 0.05 0.75 1.91 -11.15 -0.02 0.73 16 5 C 0.13 2.32 8.13 83.50 0.68 3.00 16 6 N -0.68 -18.80 3.69 -878.25 -3.24 -22.04 16 7 C 0.72 28.82 8.45 179.05 1.51 30.34 16 8 O -0.63 -30.11 15.69 -4.00 -0.06 -30.18 16 9 N -0.72 -29.34 4.91 -461.39 -2.27 -31.61 16 10 C 0.23 10.76 1.54 44.24 0.07 10.82 16 11 H 0.07 3.61 5.07 -2.39 -0.01 3.59 16 12 C -0.53 -27.68 8.52 25.60 0.22 -27.46 16 13 H 0.07 4.05 8.00 -2.91 -0.02 4.02 16 14 C 0.07 3.74 5.47 84.66 0.46 4.21 16 15 N -0.89 -50.20 13.96 21.45 0.30 -49.90 16 16 Si 0.92 44.06 26.94 68.60 1.85 45.91 16 17 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.27 -13.39 6.95 99.48 0.69 -12.70 16 19 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 20 C 0.44 19.67 2.83 71.98 0.20 19.87 16 21 F -0.18 -7.65 16.93 44.97 0.76 -6.89 16 22 F -0.19 -8.44 15.83 44.97 0.71 -7.73 16 23 F -0.19 -8.47 16.89 44.97 0.76 -7.71 16 24 C 0.11 1.68 7.81 83.60 0.65 2.34 16 25 O -0.33 -9.23 10.98 -51.53 -0.57 -9.79 16 26 C 0.63 16.80 8.86 129.88 1.15 17.95 16 27 O -0.58 -20.76 17.32 19.63 0.34 -20.42 16 28 H 0.06 0.82 7.54 -2.39 -0.02 0.80 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.14 -0.27 7.99 -2.39 -0.02 -0.29 16 32 H 0.14 -0.33 7.99 -2.39 -0.02 -0.35 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.16 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.41 14.62 8.30 -92.71 -0.77 13.85 16 36 H 0.28 14.74 8.31 -92.70 -0.77 13.97 16 37 H 0.16 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -85.09 341.74 2.63 -82.47 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.36 Total: 4.56 kcal Atomic # 6 Polarization: 58.13 SS G_CDS: 6.99 Total: 65.11 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -8.51 Total: -115.33 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -0.29 Total: -60.39 kcal Atomic # 9 Polarization: -24.56 SS G_CDS: 2.23 Total: -22.32 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.91 kcal Total: -85.09 2.63 -82.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646329860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.662 kcal (2) G-P(sol) polarization free energy of solvation -85.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds