Wall clock time and date at job start Tue Mar 31 2020 20:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00033 * 2 1 4 4 C 1.39568 * 119.99940 * 179.72336 * 2 1 3 5 5 N 1.31097 * 125.52705 * 179.69535 * 4 2 1 6 6 N 1.40409 * 106.95613 * 179.91455 * 5 4 2 7 7 H 0.97005 * 126.76835 * 180.13117 * 6 5 4 8 8 C 1.34923 * 106.46372 * 0.34539 * 6 5 4 9 9 N 1.38295 * 126.00648 * 179.76982 * 8 6 5 10 10 S 1.65599 * 119.99818 * 194.99557 * 9 8 6 11 11 O 1.42101 * 106.40373 * 178.54106 * 10 9 8 12 12 O 1.42094 * 106.40551 * 311.46522 * 10 9 8 13 13 C 1.76207 * 107.21725 * 65.00142 * 10 9 8 14 14 C 1.38632 * 119.74977 * 269.72852 * 13 10 9 15 15 C 1.37623 * 120.24843 * 179.71813 * 14 13 10 16 16 C 1.40715 * 119.74301 * 0.57403 * 15 14 13 17 17 C 1.41388 * 120.24494 * 179.68135 * 16 15 14 18 18 H 1.08007 * 119.99948 * 155.30715 * 17 16 15 19 19 C 1.39944 * 120.00238 * 335.30837 * 17 16 15 20 20 N 1.30828 * 119.99720 * 342.23567 * 19 17 16 21 21 Si 1.86798 * 120.00313 * 162.23179 * 19 17 16 22 22 H 1.48502 * 109.47266 * 94.66623 * 21 19 17 23 23 H 1.48503 * 109.47244 * 214.66635 * 21 19 17 24 24 H 1.48497 * 109.47323 * 334.66882 * 21 19 17 25 25 C 1.40719 * 119.51101 * 359.69915 * 16 15 14 26 26 C 1.37620 * 119.74648 * 0.02562 * 25 16 15 27 27 N 1.31615 * 107.98132 * 359.79086 * 8 6 5 28 28 H 1.08997 * 109.47055 * 89.99756 * 1 2 3 29 29 H 1.08997 * 109.47170 * 210.00138 * 1 2 3 30 30 H 1.09000 * 109.46942 * 330.00458 * 1 2 3 31 31 H 1.08997 * 109.47167 * 90.00060 * 3 2 1 32 32 H 1.09005 * 109.47333 * 209.99806 * 3 2 1 33 33 H 1.08995 * 109.47294 * 329.99977 * 3 2 1 34 34 H 0.96993 * 120.00200 * 15.00306 * 9 8 6 35 35 H 1.08000 * 119.87340 * 359.97438 * 14 13 10 36 36 H 1.07991 * 120.13100 * 180.27966 * 15 14 13 37 37 H 0.96998 * 120.00191 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.12650 * 179.97438 * 25 16 15 39 39 H 1.08000 * 119.87525 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1628 -1.2087 0.0058 5 7 3.4676 -1.3350 0.0008 6 7 3.7459 -2.7112 0.0118 7 1 4.6226 -3.1264 0.0131 8 6 2.5534 -3.3424 0.0153 9 7 2.3582 -4.7115 0.0212 10 16 0.8696 -5.3372 -0.3461 11 8 1.0029 -6.7507 -0.2874 12 8 -0.0733 -4.6125 0.4315 13 6 0.5373 -4.9383 -2.0300 14 6 -0.1157 -3.7555 -2.3407 15 6 -0.3753 -3.4310 -3.6527 16 6 0.0140 -4.3107 -4.6797 17 6 -0.2535 -3.9911 -6.0307 18 1 0.3551 -4.4140 -6.8164 19 6 -1.3067 -3.1267 -6.3500 20 7 -2.2472 -2.8894 -5.4721 21 14 -1.3697 -2.3117 -8.0296 22 1 -2.2176 -3.1212 -8.9412 23 1 -1.9455 -0.9492 -7.8975 24 1 0.0040 -2.2166 -8.5856 25 6 0.6711 -5.5112 -4.3520 26 6 0.9255 -5.8125 -3.0335 27 7 1.6086 -2.4260 0.0117 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.3791 1.5834 1.0276 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0283 -0.5138 34 1 3.0931 -5.3052 0.2407 35 1 -0.4182 -3.0844 -1.5505 36 1 -0.8801 -2.5071 -3.8929 37 1 -2.9774 -2.2906 -5.6935 38 1 0.9739 -6.1938 -5.1322 39 1 1.4293 -6.7334 -2.7796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647180347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:08 Heat of formation + Delta-G solvation = 53.687127 kcal Electronic energy + Delta-G solvation = -27210.678883 eV Core-core repulsion = 23282.621152 eV Total energy + Delta-G solvation = -3928.057731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78836 -37.55689 -36.79068 -36.57531 -35.25672 -34.92581 -34.04282 -32.01683 -30.25150 -29.61601 -29.43138 -27.80515 -25.83000 -24.99055 -22.25961 -21.55707 -21.11170 -20.55767 -18.82899 -18.76389 -17.60454 -17.15708 -16.67188 -16.31630 -15.81459 -15.70027 -15.50011 -14.72330 -14.34952 -14.17676 -14.10295 -13.41394 -13.21553 -12.54934 -12.43967 -12.41743 -12.20253 -12.13116 -11.91914 -11.80338 -11.72164 -11.55665 -11.43507 -11.32445 -11.26838 -11.22496 -10.86577 -10.46501 -10.33833 -9.75138 -9.68186 -9.53466 -9.47513 -8.95934 -7.96186 -7.66920 -7.66416 -7.14132 -4.80358 0.84494 1.94105 2.24999 2.55337 2.78408 2.88485 2.90395 2.95678 2.97624 3.32792 3.65683 3.71582 4.21572 4.28965 4.60958 4.98591 5.12812 5.28763 5.41838 5.45334 5.60617 5.74082 5.87927 5.96168 6.04591 6.15826 6.22235 6.27167 6.55761 6.69609 6.77258 6.95047 7.05391 7.07052 7.36711 7.40414 7.43050 7.54780 7.67773 7.78126 7.97477 8.34076 8.42995 8.51688 8.66521 9.77110 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.004777 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.576496 B = 5860.608100 C = 7662.520205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.594 5.594 3 C 0.112 3.888 4 C 0.503 3.497 5 N -0.370 5.370 6 N -0.499 5.499 7 H 0.436 0.564 8 C 0.554 3.446 9 N -1.021 6.021 10 S 2.682 3.318 11 O -0.971 6.971 12 O -0.938 6.938 13 C -0.782 4.782 14 C 0.004 3.996 15 C -0.187 4.187 16 C 0.141 3.859 17 C -0.433 4.433 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.761 5.761 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.002 4.002 27 N -0.562 5.562 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.428 0.572 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.290 0.710 38 H 0.100 0.900 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 5.016 6.919 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.320 5.320 3 C -0.032 4.032 4 C 0.133 3.867 5 N -0.212 5.212 6 N -0.224 5.224 7 H 0.282 0.718 8 C 0.185 3.815 9 N -0.769 5.769 10 S 2.782 3.218 11 O -0.961 6.961 12 O -0.928 6.928 13 C -0.880 4.880 14 C -0.016 4.016 15 C -0.208 4.208 16 C 0.137 3.863 17 C -0.461 4.461 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.383 5.383 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.180 1.180 25 C -0.259 4.259 26 C -0.022 4.022 27 N -0.303 5.303 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.264 0.736 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.774 5.389 7.601 11.520 hybrid contribution 0.959 -0.227 -1.379 1.695 sum 7.733 5.162 6.222 11.188 Atomic orbital electron populations 1.21633 0.77166 1.02991 1.01947 1.45183 1.05120 0.99774 1.81944 1.21523 0.97055 0.83606 1.00968 1.19964 0.86717 0.86436 0.93550 1.78099 1.12956 0.90281 1.39895 1.47476 1.07623 1.04139 1.63128 0.71845 1.19500 0.83641 0.85205 0.93195 1.53677 1.34502 1.07008 1.81746 1.01960 0.71509 0.72442 0.75842 1.93538 1.85174 1.28793 1.88643 1.93553 1.56767 1.72982 1.69494 1.28843 1.29884 1.10670 1.18625 1.20387 0.91784 0.92520 0.96918 1.21316 1.07079 1.00981 0.91426 1.17879 0.86025 0.88967 0.93402 1.19952 1.11173 1.21562 0.93372 0.89488 1.26140 0.94219 0.94683 0.99993 1.69829 1.06842 1.25925 1.35683 0.86164 0.80105 0.79024 0.80867 1.19060 1.19530 1.18044 1.21004 1.11485 0.98752 0.94636 1.20171 0.94035 0.95077 0.92959 1.70552 1.28774 0.97159 1.33833 0.92927 0.89909 0.91740 0.93613 0.91136 0.91270 0.73611 0.86683 0.86134 0.89914 0.88204 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.41 10.59 59.84 0.63 2.04 16 2 N -0.59 -8.69 3.41 -191.53 -0.65 -9.34 16 3 C 0.11 1.22 10.58 59.85 0.63 1.85 16 4 C 0.50 8.68 8.34 -321.22 -2.68 6.00 16 5 N -0.37 -5.95 12.10 29.98 0.36 -5.59 16 6 N -0.50 -6.88 7.46 30.02 0.22 -6.65 16 7 H 0.44 4.12 8.96 -182.36 -1.63 2.48 16 8 C 0.55 8.98 8.75 -320.89 -2.81 6.17 16 9 N -1.02 -14.86 5.84 30.03 0.18 -14.68 16 10 S 2.68 50.90 5.57 -107.50 -0.60 50.30 16 11 O -0.97 -19.35 17.26 -57.17 -0.99 -20.34 16 12 O -0.94 -20.16 16.18 -57.17 -0.93 -21.09 16 13 C -0.78 -17.22 5.92 -39.29 -0.23 -17.46 16 14 C 0.00 0.10 9.30 -39.66 -0.37 -0.27 16 15 C -0.19 -4.73 8.70 -38.87 -0.34 -5.07 16 16 C 0.14 3.58 5.57 -106.83 -0.60 2.99 16 17 C -0.43 -10.64 9.05 -37.75 -0.34 -10.98 16 18 H 0.09 2.01 7.91 -52.48 -0.41 1.60 16 19 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 20 N -0.76 -18.20 10.97 55.55 0.61 -17.59 16 21 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 16 22 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 24 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 25 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 26 C 0.00 -0.05 9.49 -39.66 -0.38 -0.42 16 27 N -0.56 -10.44 8.73 -14.37 -0.13 -10.57 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.25 7.65 -51.93 -0.40 0.86 16 30 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.43 4.26 8.95 -34.47 -0.31 3.96 16 35 H 0.12 2.65 7.15 -52.49 -0.38 2.27 16 36 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 37 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.10 2.00 7.60 -52.49 -0.40 1.60 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -32.81 350.51 -14.10 -46.92 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.49 Total: 10.94 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -6.94 Total: -19.55 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: 0.59 Total: -64.43 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.91 Total: -41.42 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 16 Polarization: 50.90 SS G_CDS: -0.60 Total: 50.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.81 -14.10 -46.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647180347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.603 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds