Wall clock time and date at job start Tue Mar 31 2020 20:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00033 * 2 1 4 4 C 1.39568 * 119.99940 * 179.72336 * 2 1 3 5 5 N 1.31097 * 125.52705 * 179.69535 * 4 2 1 6 6 N 1.40409 * 106.95613 * 179.91455 * 5 4 2 7 7 H 0.97005 * 126.76835 * 180.13117 * 6 5 4 8 8 C 1.34923 * 106.46372 * 0.34539 * 6 5 4 9 9 N 1.38295 * 126.00648 * 179.76982 * 8 6 5 10 10 S 1.65599 * 119.99818 * 194.99557 * 9 8 6 11 11 O 1.42101 * 106.40373 * 178.54106 * 10 9 8 12 12 O 1.42094 * 106.40551 * 311.46522 * 10 9 8 13 13 C 1.76207 * 107.21725 * 65.00142 * 10 9 8 14 14 C 1.38632 * 119.74977 * 269.72852 * 13 10 9 15 15 C 1.37623 * 120.24843 * 179.71813 * 14 13 10 16 16 C 1.40715 * 119.74301 * 0.57403 * 15 14 13 17 17 C 1.41388 * 120.24494 * 179.68135 * 16 15 14 18 18 H 1.08007 * 119.99948 * 155.30715 * 17 16 15 19 19 C 1.39944 * 120.00238 * 335.30837 * 17 16 15 20 20 N 1.30828 * 119.99720 * 342.23567 * 19 17 16 21 21 Si 1.86798 * 120.00313 * 162.23179 * 19 17 16 22 22 H 1.48502 * 109.47266 * 94.66623 * 21 19 17 23 23 H 1.48503 * 109.47244 * 214.66635 * 21 19 17 24 24 H 1.48497 * 109.47323 * 334.66882 * 21 19 17 25 25 C 1.40719 * 119.51101 * 359.69915 * 16 15 14 26 26 C 1.37620 * 119.74648 * 0.02562 * 25 16 15 27 27 N 1.31615 * 107.98132 * 359.79086 * 8 6 5 28 28 H 1.08997 * 109.47055 * 89.99756 * 1 2 3 29 29 H 1.08997 * 109.47170 * 210.00138 * 1 2 3 30 30 H 1.09000 * 109.46942 * 330.00458 * 1 2 3 31 31 H 1.08997 * 109.47167 * 90.00060 * 3 2 1 32 32 H 1.09005 * 109.47333 * 209.99806 * 3 2 1 33 33 H 1.08995 * 109.47294 * 329.99977 * 3 2 1 34 34 H 0.96993 * 120.00200 * 15.00306 * 9 8 6 35 35 H 1.08000 * 119.87340 * 359.97438 * 14 13 10 36 36 H 1.07991 * 120.13100 * 180.27966 * 15 14 13 37 37 H 0.96998 * 120.00191 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.12650 * 179.97438 * 25 16 15 39 39 H 1.08000 * 119.87525 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1628 -1.2087 0.0058 5 7 3.4676 -1.3350 0.0008 6 7 3.7459 -2.7112 0.0118 7 1 4.6226 -3.1264 0.0131 8 6 2.5534 -3.3424 0.0153 9 7 2.3582 -4.7115 0.0212 10 16 0.8696 -5.3372 -0.3461 11 8 1.0029 -6.7507 -0.2874 12 8 -0.0733 -4.6125 0.4315 13 6 0.5373 -4.9383 -2.0300 14 6 -0.1157 -3.7555 -2.3407 15 6 -0.3753 -3.4310 -3.6527 16 6 0.0140 -4.3107 -4.6797 17 6 -0.2535 -3.9911 -6.0307 18 1 0.3551 -4.4140 -6.8164 19 6 -1.3067 -3.1267 -6.3500 20 7 -2.2472 -2.8894 -5.4721 21 14 -1.3697 -2.3117 -8.0296 22 1 -2.2176 -3.1212 -8.9412 23 1 -1.9455 -0.9492 -7.8975 24 1 0.0040 -2.2166 -8.5856 25 6 0.6711 -5.5112 -4.3520 26 6 0.9255 -5.8125 -3.0335 27 7 1.6086 -2.4260 0.0117 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.3791 1.5834 1.0276 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0283 -0.5138 34 1 3.0931 -5.3052 0.2407 35 1 -0.4182 -3.0844 -1.5505 36 1 -0.8801 -2.5071 -3.8929 37 1 -2.9774 -2.2906 -5.6935 38 1 0.9739 -6.1938 -5.1322 39 1 1.4293 -6.7334 -2.7796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647180347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:07 Heat of formation + Delta-G solvation = 34.602944 kcal Electronic energy + Delta-G solvation = -27211.506436 eV Core-core repulsion = 23282.621152 eV Total energy + Delta-G solvation = -3928.885283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.02908 -39.36323 -38.26472 -37.85443 -36.89521 -36.18734 -35.80521 -33.25894 -32.05840 -31.27114 -30.82989 -28.78441 -27.63101 -26.08412 -23.54641 -23.32028 -22.93056 -21.82514 -20.23597 -20.03898 -19.40726 -18.71481 -18.20304 -17.58207 -17.24838 -16.97841 -16.89114 -16.29714 -15.81662 -15.40904 -15.29191 -15.14962 -14.94417 -14.14021 -14.00159 -13.84255 -13.56571 -13.35095 -13.25266 -13.20561 -13.09375 -13.02580 -12.93344 -12.86618 -12.79727 -12.65598 -12.56164 -12.03246 -11.56451 -11.48810 -11.31479 -11.19764 -10.95243 -10.27307 -9.79197 -9.51274 -8.87252 -8.77729 -6.65386 -0.69625 0.48653 0.68911 1.10293 1.32018 1.35898 1.43504 1.51787 1.62761 2.04200 2.10708 2.40668 2.59532 2.75034 3.24113 3.50768 3.56499 3.99355 4.28622 4.34909 4.41946 4.54627 4.59336 4.79931 4.86603 4.90935 4.95090 4.96781 5.07454 5.09440 5.14820 5.24838 5.44737 5.55956 5.60822 5.80604 5.94591 6.01846 6.15819 6.35887 6.39414 6.51235 6.68529 6.82378 7.21406 8.07994 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.004777 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.576496 B = 5860.608100 C = 7662.520205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.600 5.600 3 C 0.109 3.891 4 C 0.484 3.516 5 N -0.374 5.374 6 N -0.478 5.478 7 H 0.456 0.544 8 C 0.544 3.456 9 N -1.001 6.001 10 S 2.725 3.275 11 O -0.974 6.974 12 O -0.962 6.962 13 C -0.796 4.796 14 C 0.003 3.997 15 C -0.212 4.212 16 C 0.113 3.887 17 C -0.465 4.465 18 H 0.093 0.907 19 C 0.034 3.966 20 N -0.795 5.795 21 Si 0.990 3.010 22 H -0.257 1.257 23 H -0.263 1.263 24 H -0.255 1.255 25 C -0.257 4.257 26 C -0.002 4.002 27 N -0.598 5.598 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.451 0.549 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.298 0.702 38 H 0.114 0.886 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 5.314 7.074 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.326 5.326 3 C -0.033 4.033 4 C 0.114 3.886 5 N -0.217 5.217 6 N -0.205 5.205 7 H 0.305 0.695 8 C 0.174 3.826 9 N -0.756 5.756 10 S 2.821 3.179 11 O -0.965 6.965 12 O -0.952 6.952 13 C -0.891 4.891 14 C -0.017 4.017 15 C -0.233 4.233 16 C 0.110 3.890 17 C -0.492 4.492 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.418 5.418 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.178 1.178 25 C -0.277 4.277 26 C -0.022 4.022 27 N -0.340 5.340 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.292 0.708 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.043 5.672 7.734 12.517 hybrid contribution 0.650 -0.339 -1.258 1.456 sum 8.693 5.333 6.476 12.081 Atomic orbital electron populations 1.21639 0.76914 1.03645 1.01357 1.45569 1.05603 1.00063 1.81381 1.21718 0.96822 0.82558 1.02179 1.20373 0.87184 0.86978 0.94039 1.78037 1.12535 0.91200 1.39898 1.47345 1.08000 1.03340 1.61786 0.69471 1.19438 0.84225 0.85234 0.93713 1.52945 1.34356 1.06933 1.81336 1.00712 0.71526 0.71702 0.73951 1.93531 1.85582 1.29091 1.88259 1.93529 1.58680 1.73601 1.69366 1.29360 1.29062 1.09674 1.20972 1.20430 0.91746 0.93272 0.96250 1.21293 1.08502 1.01017 0.92438 1.18227 0.86945 0.89837 0.94036 1.20250 1.12295 1.23266 0.93368 0.88933 1.27029 0.93169 0.94495 1.03866 1.69871 1.07549 1.26561 1.37789 0.85069 0.80147 0.78106 0.75806 1.18163 1.18703 1.17810 1.21259 1.11922 0.98615 0.95937 1.20519 0.93363 0.95930 0.92383 1.70473 1.30540 0.98228 1.34761 0.94144 0.92236 0.88046 0.92090 0.91892 0.88929 0.70800 0.86835 0.87674 0.89036 0.86840 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.85 10.59 127.77 1.35 4.20 16 2 N -0.60 -17.17 3.41 -759.89 -2.59 -19.76 16 3 C 0.11 2.20 10.58 127.77 1.35 3.55 16 4 C 0.48 16.47 8.34 260.93 2.18 18.65 16 5 N -0.37 -11.58 12.10 -59.05 -0.71 -12.29 16 6 N -0.48 -12.31 7.46 -58.93 -0.44 -12.75 16 7 H 0.46 7.48 8.96 -213.11 -1.91 5.57 16 8 C 0.54 16.92 8.75 260.81 2.28 19.20 16 9 N -1.00 -27.18 5.84 -58.91 -0.34 -27.52 16 10 S 2.73 99.83 5.57 -56.49 -0.31 99.51 16 11 O -0.97 -36.60 17.26 -128.00 -2.21 -38.80 16 12 O -0.96 -40.88 16.18 -128.00 -2.07 -42.96 16 13 C -0.80 -34.87 5.92 22.46 0.13 -34.73 16 14 C 0.00 0.16 9.30 22.22 0.21 0.36 16 15 C -0.21 -11.16 8.70 22.73 0.20 -10.96 16 16 C 0.11 5.92 5.57 -21.29 -0.12 5.80 16 17 C -0.47 -23.40 9.05 23.46 0.21 -23.19 16 18 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 19 C 0.03 1.60 5.14 85.26 0.44 2.03 16 20 N -0.79 -39.14 10.97 21.83 0.24 -38.90 16 21 Si 0.99 34.80 29.59 68.60 2.03 36.83 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 23 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 24 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 25 C -0.26 -12.18 9.80 22.73 0.22 -11.95 16 26 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 27 N -0.60 -22.07 8.73 -199.39 -1.74 -23.81 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.85 7.65 -2.39 -0.02 1.83 16 30 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.37 7.66 -2.38 -0.02 1.35 16 33 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.45 7.67 8.95 -96.75 -0.87 6.80 16 35 H 0.11 5.44 7.15 -2.91 -0.02 5.41 16 36 H 0.11 5.72 6.18 -2.92 -0.02 5.70 16 37 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 38 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.13 4.86 7.60 -2.91 -0.02 4.83 16 Total: -1.00 -71.95 350.51 -1.13 -73.09 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -1.65 Total: 34.29 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 8.67 Total: -26.91 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -5.59 Total: -135.04 kcal Atomic # 8 Polarization: -77.48 SS G_CDS: -4.28 Total: -81.76 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 16 Polarization: 99.83 SS G_CDS: -0.31 Total: 99.51 kcal Total: -71.95 -1.13 -73.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647180347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.688 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds