Wall clock time and date at job start Tue Mar 31 2020 19:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99764 * 2 1 4 4 H 1.48503 * 109.46672 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47200 * 299.99970 * 3 2 1 6 6 H 1.48493 * 109.46955 * 60.00280 * 3 2 1 7 7 C 1.38809 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99920 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00081 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47214 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00284 * 269.99927 * 12 11 10 14 14 C 1.53000 * 109.47256 * 263.69938 * 13 12 11 15 15 O 1.42894 * 109.47399 * 64.99608 * 14 13 12 16 16 C 1.34783 * 120.00107 * 89.99749 * 12 11 10 17 17 O 1.21615 * 119.99779 * 4.11236 * 16 12 11 18 18 C 1.47411 * 120.00141 * 184.10795 * 16 12 11 19 19 C 1.36096 * 126.45279 * 173.53357 * 18 16 12 20 20 O 1.34250 * 106.95338 * 180.26794 * 19 18 16 21 21 C 1.34049 * 108.22933 * 359.97438 * 20 19 18 22 22 C 1.50697 * 125.38054 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46796 * 269.95768 * 22 21 20 24 24 F 1.39898 * 109.47348 * 29.95542 * 22 21 20 25 25 F 1.39897 * 109.47209 * 149.95950 * 22 21 20 26 26 N 1.29936 * 109.24229 * 0.02562 * 21 20 19 27 27 H 0.97001 * 120.00573 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00298 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.46423 * 60.00438 * 10 9 7 30 30 H 1.09000 * 109.47267 * 300.00200 * 10 9 7 31 31 H 1.08996 * 109.47117 * 60.00300 * 11 10 9 32 32 H 1.09008 * 109.46849 * 300.00267 * 11 10 9 33 33 H 1.09001 * 109.46699 * 23.69597 * 13 12 11 34 34 H 1.08997 * 109.47657 * 143.69157 * 13 12 11 35 35 H 1.09001 * 109.46841 * 184.99641 * 14 13 12 36 36 H 1.09000 * 109.46494 * 304.99080 * 14 13 12 37 37 H 0.96703 * 113.99953 * 180.02562 * 15 14 13 38 38 H 1.08007 * 126.51657 * 0.26387 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 7 1.7963 -6.0884 0.0005 13 6 2.1635 -6.7229 -1.2678 14 6 1.1181 -7.7794 -1.6310 15 8 -0.1374 -7.1427 -1.8764 16 6 2.1325 -6.6719 1.1680 17 8 1.7635 -6.1850 2.2196 18 6 2.9473 -7.9004 1.1704 19 6 3.4631 -8.5266 2.2631 20 8 4.1394 -9.5974 1.8178 21 6 4.0413 -9.6293 0.4813 22 6 4.6583 -10.6725 -0.4142 23 9 5.9426 -10.2641 -0.7898 24 9 4.7380 -11.8887 0.2727 25 9 3.8673 -10.8332 -1.5568 26 7 3.3301 -8.6186 0.0799 27 1 -0.4851 0.8400 0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6846 -3.7144 0.8906 30 1 2.6847 -3.7145 -0.8894 31 1 0.4376 -4.7618 -0.8903 32 1 0.4368 -4.7621 0.8897 33 1 2.2051 -5.9680 -2.0530 34 1 3.1398 -7.1971 -1.1678 35 1 1.4364 -8.3124 -2.5270 36 1 1.0130 -8.4848 -0.8067 37 1 -0.8488 -7.7537 -2.1123 38 1 3.3498 -8.2202 3.2926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672641626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:35 Heat of formation + Delta-G solvation = -169.112740 kcal Electronic energy + Delta-G solvation = -29606.549330 eV Core-core repulsion = 24651.927909 eV Total energy + Delta-G solvation = -4954.621421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.93555 -48.46087 -48.43190 -44.29309 -39.90513 -37.20613 -35.80074 -35.65234 -34.21200 -32.08523 -31.37187 -29.43299 -27.86228 -27.24724 -24.95950 -23.43849 -22.99669 -22.72771 -21.53885 -20.31773 -19.41129 -19.16875 -18.68612 -17.82682 -17.46348 -17.38571 -17.14676 -16.76023 -16.09824 -15.34338 -15.24185 -15.19559 -14.81346 -14.72488 -14.53635 -14.52893 -14.47972 -14.33415 -13.81818 -13.59028 -13.55064 -13.26896 -13.17921 -12.82859 -12.68205 -12.26139 -11.69040 -11.23692 -11.07614 -10.90044 -10.83423 -10.60680 -10.28208 -10.04777 -10.01924 -9.97916 -9.70377 -8.84045 -8.55387 -6.89069 -5.72142 -3.01356 0.29544 0.92956 1.11498 2.05221 2.58979 2.84959 3.00991 3.43367 3.46779 3.49754 3.51978 3.54563 3.92272 4.11282 4.24579 4.52674 4.64880 4.83849 4.93458 5.11958 5.15243 5.32044 5.55031 5.59449 5.74973 5.83705 5.97722 6.09661 6.21408 6.42590 6.57401 6.76596 6.92438 7.37486 7.58986 7.74217 8.02195 8.46159 9.57204 10.13671 10.49044 11.50830 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.002593 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.843915 B =10794.545125 C =11136.844151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.111 3.889 12 N -0.576 5.576 13 C 0.102 3.898 14 C 0.070 3.930 15 O -0.567 6.567 16 C 0.593 3.407 17 O -0.523 6.523 18 C -0.059 4.059 19 C 0.057 3.943 20 O -0.167 6.167 21 C 0.087 3.913 22 C 0.587 3.413 23 F -0.152 7.152 24 F -0.156 7.156 25 F -0.142 7.142 26 N -0.389 5.389 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.021 0.979 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.375 0.625 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -28.573 -1.211 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.011 4.011 12 N -0.306 5.306 13 C -0.022 4.022 14 C -0.009 4.009 15 O -0.372 6.372 16 C 0.378 3.622 17 O -0.399 6.399 18 C -0.181 4.181 19 C -0.017 4.017 20 O -0.050 6.050 21 C -0.122 4.122 22 C 0.531 3.469 23 F -0.133 7.133 24 F -0.137 7.137 25 F -0.123 7.123 26 N -0.122 5.122 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.221 0.779 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.193 -27.581 -1.177 28.796 hybrid contribution 0.112 0.102 0.379 0.408 sum 8.305 -27.479 -0.797 28.717 Atomic orbital electron populations 1.69672 1.05092 1.25539 1.57820 1.24748 0.95554 0.97682 1.03036 0.86096 0.78755 0.84056 0.77170 1.20574 1.21853 1.21836 1.19248 0.91024 0.83961 1.42569 0.91166 1.42204 1.05917 0.99703 1.89583 1.20919 0.93867 0.85794 0.98013 1.21825 0.94578 0.80470 1.04194 1.47620 1.54947 1.23017 1.05064 1.22082 0.98308 0.96129 0.85642 1.22531 0.84620 0.94756 0.98979 1.86576 1.20058 1.38127 1.92432 1.16667 0.79647 0.81252 0.84636 1.90892 1.54466 1.63714 1.30814 1.22174 1.06884 1.00814 0.88206 1.25787 0.90733 0.83529 1.01694 1.84401 1.57183 1.41612 1.21791 1.25612 1.05358 0.99950 0.81265 1.15974 0.76054 0.77534 0.77336 1.93337 1.38328 1.90149 1.91474 1.93309 1.96023 1.45088 1.79294 1.93325 1.73837 1.95195 1.49945 1.70947 1.08743 1.02140 1.30364 0.93539 0.78163 0.96155 0.96378 0.89215 0.89615 0.89217 0.86741 0.92735 0.93966 0.77869 0.73526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.94 13.06 55.49 0.72 -28.21 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.49 5.60 -59.91 -0.34 -19.82 16 10 C 0.14 3.11 6.58 -4.04 -0.03 3.08 16 11 C 0.11 2.03 5.52 -4.05 -0.02 2.01 16 12 N -0.58 -8.79 2.43 -174.96 -0.43 -9.22 16 13 C 0.10 1.26 5.37 -4.04 -0.02 1.24 16 14 C 0.07 0.75 6.79 37.16 0.25 1.00 16 15 O -0.57 -6.74 13.26 -35.23 -0.47 -7.21 16 16 C 0.59 8.96 7.62 -12.52 -0.10 8.86 16 17 O -0.52 -9.48 16.45 5.26 0.09 -9.39 16 18 C -0.06 -0.67 6.47 -83.02 -0.54 -1.20 16 19 C 0.06 0.47 11.95 29.96 0.36 0.83 16 20 O -0.17 -1.35 10.70 6.53 0.07 -1.28 16 21 C 0.09 0.75 7.53 -13.08 -0.10 0.66 16 22 C 0.59 4.21 3.57 36.00 0.13 4.34 16 23 F -0.15 -1.13 17.30 2.25 0.04 -1.09 16 24 F -0.16 -1.07 17.28 2.25 0.04 -1.03 16 25 F -0.14 -1.03 17.23 2.25 0.04 -1.00 16 26 N -0.39 -3.97 6.65 -7.66 -0.05 -4.02 16 27 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.64 7.74 -51.93 -0.40 1.23 16 32 H 0.09 1.70 7.37 -51.92 -0.38 1.32 16 33 H 0.09 1.15 8.02 -51.93 -0.42 0.73 16 34 H 0.12 1.30 5.28 -51.93 -0.27 1.03 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.46 7.25 -51.93 -0.38 0.08 16 37 H 0.37 2.77 9.12 45.56 0.42 3.18 16 38 H 0.25 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -35.17 348.80 -3.34 -38.51 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -2.99 Total: 7.33 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -0.31 Total: 13.24 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.09 Total: -61.27 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.31 Total: -17.88 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.12 Total: -3.11 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.17 -3.34 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672641626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.602 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds