Wall clock time and date at job start Tue Mar 31 2020 19:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99764 * 2 1 4 4 H 1.48503 * 109.46672 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47200 * 299.99970 * 3 2 1 6 6 H 1.48493 * 109.46955 * 60.00280 * 3 2 1 7 7 C 1.38809 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99920 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00081 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47214 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00284 * 269.99927 * 12 11 10 14 14 C 1.53000 * 109.47256 * 263.69938 * 13 12 11 15 15 O 1.42894 * 109.47399 * 64.99608 * 14 13 12 16 16 C 1.34783 * 120.00107 * 89.99749 * 12 11 10 17 17 O 1.21615 * 119.99779 * 4.11236 * 16 12 11 18 18 C 1.47411 * 120.00141 * 184.10795 * 16 12 11 19 19 C 1.36096 * 126.45279 * 173.53357 * 18 16 12 20 20 O 1.34250 * 106.95338 * 180.26794 * 19 18 16 21 21 C 1.34049 * 108.22933 * 359.97438 * 20 19 18 22 22 C 1.50697 * 125.38054 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46796 * 269.95768 * 22 21 20 24 24 F 1.39898 * 109.47348 * 29.95542 * 22 21 20 25 25 F 1.39897 * 109.47209 * 149.95950 * 22 21 20 26 26 N 1.29936 * 109.24229 * 0.02562 * 21 20 19 27 27 H 0.97001 * 120.00573 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00298 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.46423 * 60.00438 * 10 9 7 30 30 H 1.09000 * 109.47267 * 300.00200 * 10 9 7 31 31 H 1.08996 * 109.47117 * 60.00300 * 11 10 9 32 32 H 1.09008 * 109.46849 * 300.00267 * 11 10 9 33 33 H 1.09001 * 109.46699 * 23.69597 * 13 12 11 34 34 H 1.08997 * 109.47657 * 143.69157 * 13 12 11 35 35 H 1.09001 * 109.46841 * 184.99641 * 14 13 12 36 36 H 1.09000 * 109.46494 * 304.99080 * 14 13 12 37 37 H 0.96703 * 113.99953 * 180.02562 * 15 14 13 38 38 H 1.08007 * 126.51657 * 0.26387 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 7 1.7963 -6.0884 0.0005 13 6 2.1635 -6.7229 -1.2678 14 6 1.1181 -7.7794 -1.6310 15 8 -0.1374 -7.1427 -1.8764 16 6 2.1325 -6.6719 1.1680 17 8 1.7635 -6.1850 2.2196 18 6 2.9473 -7.9004 1.1704 19 6 3.4631 -8.5266 2.2631 20 8 4.1394 -9.5974 1.8178 21 6 4.0413 -9.6293 0.4813 22 6 4.6583 -10.6725 -0.4142 23 9 5.9426 -10.2641 -0.7898 24 9 4.7380 -11.8887 0.2727 25 9 3.8673 -10.8332 -1.5568 26 7 3.3301 -8.6186 0.0799 27 1 -0.4851 0.8400 0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6846 -3.7144 0.8906 30 1 2.6847 -3.7145 -0.8894 31 1 0.4376 -4.7618 -0.8903 32 1 0.4368 -4.7621 0.8897 33 1 2.2051 -5.9680 -2.0530 34 1 3.1398 -7.1971 -1.1678 35 1 1.4364 -8.3124 -2.5270 36 1 1.0130 -8.4848 -0.8067 37 1 -0.8488 -7.7537 -2.1123 38 1 3.3498 -8.2202 3.2926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672641626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:35 Heat of formation + Delta-G solvation = -197.445662 kcal Electronic energy + Delta-G solvation = -29607.777937 eV Core-core repulsion = 24651.927909 eV Total energy + Delta-G solvation = -4955.850028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.50292 -49.01752 -49.00380 -45.02472 -41.09567 -38.23606 -37.16804 -36.61129 -35.83468 -33.49586 -32.69913 -30.78739 -29.23105 -28.02316 -26.38957 -24.94968 -23.96877 -23.62476 -23.01932 -21.32672 -19.99221 -19.80582 -19.57283 -19.23272 -18.71816 -18.23467 -18.13045 -17.58587 -17.44298 -16.70173 -16.36505 -15.85183 -15.77840 -15.65793 -15.48085 -15.37341 -15.23735 -15.13619 -15.09723 -15.08913 -14.91444 -14.60717 -14.23881 -14.03287 -13.75968 -13.24971 -13.03087 -12.92137 -12.79497 -12.52696 -12.29876 -12.09152 -11.90713 -11.88090 -11.40041 -11.00423 -10.91073 -10.76653 -9.82486 -9.07925 -7.97894 -5.29296 -0.39800 0.25566 0.29041 1.34600 1.46344 1.48359 1.58403 1.70929 1.92206 2.02486 2.54985 2.83691 2.92140 3.01775 3.35155 3.35749 3.43543 3.76985 3.99178 4.03815 4.13516 4.21556 4.24179 4.29762 4.32810 4.51262 4.56164 4.71919 4.99060 4.99598 5.04734 5.37382 5.46690 5.72632 6.20476 6.23205 6.83803 6.92536 7.29246 7.99934 8.26067 9.25795 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.002593 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.843915 B =10794.545125 C =11136.844151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.131 3.869 12 N -0.580 5.580 13 C 0.098 3.902 14 C 0.076 3.924 15 O -0.592 6.592 16 C 0.592 3.408 17 O -0.562 6.562 18 C -0.090 4.090 19 C 0.091 3.909 20 O -0.159 6.159 21 C 0.093 3.907 22 C 0.596 3.404 23 F -0.152 7.152 24 F -0.151 7.151 25 F -0.141 7.141 26 N -0.397 5.397 27 H 0.254 0.746 28 H 0.376 0.624 29 H 0.007 0.993 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.393 0.607 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -29.996 -1.410 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.386 5.386 10 C 0.022 3.978 11 C 0.008 3.992 12 N -0.309 5.309 13 C -0.024 4.024 14 C -0.002 4.002 15 O -0.400 6.400 16 C 0.380 3.620 17 O -0.441 6.441 18 C -0.211 4.211 19 C 0.016 3.984 20 O -0.042 6.042 21 C -0.118 4.118 22 C 0.540 3.460 23 F -0.133 7.133 24 F -0.132 7.132 25 F -0.122 7.122 26 N -0.129 5.129 27 H 0.062 0.938 28 H 0.208 0.792 29 H 0.025 0.975 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.243 0.757 38 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 9.720 -29.064 -1.410 30.679 hybrid contribution -0.324 0.426 0.449 0.699 sum 9.396 -28.638 -0.961 30.155 Atomic orbital electron populations 1.69830 1.06685 1.26291 1.59009 1.25646 0.96510 1.01283 1.03148 0.84997 0.78118 0.79268 0.76875 1.19050 1.21535 1.21811 1.19627 0.91443 0.85102 1.42008 0.90771 1.42386 1.05699 1.00898 1.89574 1.20945 0.94197 0.85279 0.97367 1.21341 0.93599 0.81077 1.03176 1.47643 1.54762 1.22007 1.06522 1.22299 0.99707 0.96337 0.84034 1.22485 0.83844 0.93891 1.00017 1.86523 1.21134 1.39728 1.92608 1.17047 0.79181 0.81995 0.83779 1.90862 1.56066 1.65236 1.31967 1.21640 1.08914 1.00705 0.89845 1.26324 0.87961 0.82025 1.02076 1.84458 1.56871 1.41310 1.21550 1.25827 1.04676 0.99684 0.81572 1.15781 0.75869 0.77264 0.77065 1.93342 1.38318 1.90180 1.91435 1.93324 1.95984 1.44703 1.79225 1.93331 1.73848 1.95154 1.49858 1.70808 1.09240 1.02572 1.30266 0.93750 0.79238 0.97486 0.95608 0.89170 0.91580 0.89869 0.85515 0.90193 0.94033 0.75728 0.70603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.06 21.65 0.28 -60.64 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 7 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 8 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -40.54 5.60 -343.45 -1.92 -42.46 16 10 C 0.15 6.66 6.58 86.38 0.57 7.23 16 11 C 0.13 4.94 5.52 86.38 0.48 5.42 16 12 N -0.58 -17.74 2.43 -825.71 -2.01 -19.75 16 13 C 0.10 2.36 5.37 86.38 0.46 2.82 16 14 C 0.08 1.51 6.79 71.98 0.49 2.00 16 15 O -0.59 -13.55 13.26 -148.98 -1.98 -15.52 16 16 C 0.59 17.85 7.62 86.66 0.66 18.51 16 17 O -0.56 -20.73 16.45 -4.08 -0.07 -20.79 16 18 C -0.09 -1.92 6.47 40.40 0.26 -1.66 16 19 C 0.09 1.29 11.95 67.32 0.80 2.09 16 20 O -0.16 -2.14 10.70 0.46 0.00 -2.14 16 21 C 0.09 1.39 7.53 88.39 0.67 2.05 16 22 C 0.60 7.20 3.57 71.23 0.25 7.45 16 23 F -0.15 -1.94 17.30 44.97 0.78 -1.16 16 24 F -0.15 -1.71 17.28 44.97 0.78 -0.93 16 25 F -0.14 -1.74 17.23 44.97 0.78 -0.97 16 26 N -0.40 -7.36 6.65 -293.04 -1.95 -9.31 16 27 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.38 21.57 7.67 -92.71 -0.71 20.86 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 3.37 7.74 -2.39 -0.02 3.35 16 32 H 0.07 2.74 7.37 -2.38 -0.02 2.73 16 33 H 0.08 2.09 8.02 -2.39 -0.02 2.07 16 34 H 0.13 2.72 5.28 -2.39 -0.01 2.71 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.84 7.25 -2.39 -0.02 0.82 16 37 H 0.39 5.35 9.12 -74.05 -0.68 4.68 16 38 H 0.28 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -75.80 348.80 2.44 -73.36 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.23 Total: 22.86 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 5.95 Total: 28.15 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -5.60 Total: -132.17 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.04 Total: -38.45 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 2.33 Total: -3.06 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -75.80 2.44 -73.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672641626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.089 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds