Wall clock time and date at job start Tue Mar 31 2020 19:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30020 * 127.33990 * 2 1 4 4 O 1.20650 * 112.30196 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.16032 * 359.75081 * 4 3 2 6 6 C 1.50697 * 126.82960 * 180.30108 * 5 4 3 7 7 F 1.39901 * 109.47253 * 270.10737 * 6 5 4 8 8 F 1.39901 * 109.47166 * 30.10933 * 6 5 4 9 9 F 1.39899 * 109.46918 * 150.11216 * 6 5 4 10 10 C 1.37365 * 106.33942 * 0.39544 * 5 4 3 11 11 C 1.47398 * 128.56206 * 179.90812 * 10 5 4 12 12 O 1.21604 * 119.99857 * 269.67357 * 11 10 5 13 13 N 1.34779 * 119.99899 * 89.67605 * 11 10 5 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 H 1.09008 * 109.47142 * 294.99240 * 15 14 13 17 17 C 1.53002 * 109.46776 * 174.99842 * 15 14 13 18 18 O 1.42895 * 109.47504 * 304.99727 * 17 15 14 19 19 N 1.46496 * 109.47449 * 54.99576 * 15 14 13 20 20 C 1.36941 * 120.00198 * 204.99613 * 19 15 14 21 21 H 1.07996 * 119.99379 * 0.02562 * 20 19 15 22 22 C 1.38810 * 119.99828 * 180.02562 * 20 19 15 23 23 N 1.31618 * 119.99768 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00221 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47022 * 89.99596 * 24 22 20 26 26 H 1.48501 * 109.47153 * 209.99829 * 24 22 20 27 27 H 1.48500 * 109.47069 * 329.99978 * 24 22 20 28 28 H 1.08995 * 109.47122 * 270.00005 * 1 2 3 29 29 H 1.08998 * 109.46449 * 29.99996 * 1 2 3 30 30 H 1.08992 * 109.47125 * 149.99885 * 1 2 3 31 31 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 33 33 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 34 34 H 1.09001 * 109.46966 * 65.00241 * 17 15 14 35 35 H 1.09007 * 109.46935 * 184.99698 * 17 15 14 36 36 H 0.96700 * 114.00507 * 180.02562 * 18 17 15 37 37 H 0.97002 * 119.99429 * 25.00168 * 19 15 14 38 38 H 0.96994 * 120.00390 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0063 6 6 4.9712 -1.3246 0.0148 7 9 5.3872 -1.5514 -1.3015 8 9 5.9253 -0.5454 0.6778 9 9 4.8279 -2.5492 0.6760 10 6 2.3991 -1.1697 0.0007 11 6 2.0400 -2.5992 0.0016 12 8 1.8918 -3.1896 -1.0511 13 7 1.8760 -3.2520 1.1693 14 6 1.5185 -4.6728 1.1703 15 6 1.3939 -5.1663 2.6131 16 1 2.3676 -5.1136 3.1005 17 6 0.8999 -6.6143 2.6159 18 8 -0.3194 -6.7032 1.8761 19 7 0.4393 -4.3232 3.3370 20 6 0.5210 -4.2103 4.6993 21 1 1.2897 -4.7425 5.2399 22 6 -0.3839 -3.4118 5.3851 23 7 -0.3050 -3.3030 6.6944 24 14 -1.7138 -2.4919 4.4498 25 1 -2.9250 -3.3445 4.3449 26 1 -2.0511 -1.2394 5.1728 27 1 -1.2223 -2.1605 3.0882 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9946 -2.7811 2.0090 32 1 2.2928 -5.2426 0.6565 33 1 0.5666 -4.8082 0.6569 34 1 1.6517 -7.2555 2.1557 35 1 0.7264 -6.9370 3.6426 36 1 -0.6912 -7.5949 1.8362 37 1 -0.2509 -3.8450 2.8512 38 1 -0.9371 -2.7448 7.1736 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676589221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:52 Heat of formation + Delta-G solvation = -150.361568 kcal Electronic energy + Delta-G solvation = -30527.686180 eV Core-core repulsion = 25573.877871 eV Total energy + Delta-G solvation = -4953.808309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.62110 -48.14304 -48.10773 -45.44854 -39.70414 -37.39370 -35.17912 -35.04945 -33.77337 -33.31132 -31.60563 -29.28644 -29.01978 -27.28099 -25.89491 -24.17517 -23.32001 -21.60752 -20.79126 -20.28955 -19.17282 -19.03781 -18.78065 -18.13566 -18.03071 -17.47078 -16.97076 -16.25788 -15.96342 -15.29198 -14.93420 -14.89319 -14.58646 -14.48114 -14.44501 -14.21619 -14.19714 -13.93588 -13.71998 -13.65300 -13.55135 -13.35926 -13.12696 -12.94124 -12.63775 -12.47946 -11.83371 -11.70701 -11.11566 -10.97413 -10.86264 -10.53225 -10.38647 -10.23373 -10.18080 -9.73319 -9.55866 -9.10397 -9.00415 -7.44776 -5.90770 -3.28065 0.40561 1.37442 1.43153 2.16146 2.59890 2.98509 3.13435 3.25160 3.32481 3.37012 3.66652 3.79786 3.88773 4.06991 4.46795 4.48064 4.64474 4.73153 5.07432 5.10420 5.20530 5.25727 5.32938 5.36873 5.68679 5.74904 5.80512 5.82678 6.04877 6.27010 6.45473 6.51263 7.43870 7.58082 7.81894 8.01031 8.04352 8.27681 9.04911 9.77199 9.96522 11.26755 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004416 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.338183 B = 6339.310639 C = 7130.631377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.062 3.938 3 N -0.326 5.326 4 O 0.138 5.862 5 C -0.101 4.101 6 C 0.566 3.434 7 F -0.155 7.155 8 F -0.157 7.157 9 F -0.147 7.147 10 C -0.159 4.159 11 C 0.583 3.417 12 O -0.521 6.521 13 N -0.694 5.694 14 C 0.114 3.886 15 C 0.171 3.829 16 H 0.077 0.923 17 C 0.060 3.940 18 O -0.566 6.566 19 N -0.739 5.739 20 C -0.252 4.252 21 H 0.091 0.909 22 C 0.011 3.989 23 N -0.928 5.928 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.367 0.633 37 H 0.365 0.635 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 2.442 -14.172 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 N -0.026 5.026 4 O 0.069 5.931 5 C -0.166 4.166 6 C 0.510 3.490 7 F -0.137 7.137 8 F -0.138 7.138 9 F -0.129 7.129 10 C -0.166 4.166 11 C 0.365 3.635 12 O -0.398 6.398 13 N -0.345 5.345 14 C -0.010 4.010 15 C 0.061 3.939 16 H 0.095 0.905 17 C -0.021 4.021 18 O -0.370 6.370 19 N -0.382 5.382 20 C -0.382 4.382 21 H 0.109 0.891 22 C -0.186 4.186 23 N -0.575 5.575 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.213 0.787 37 H 0.199 0.801 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.657 3.936 -14.706 17.041 hybrid contribution -0.932 -0.568 0.072 1.093 sum 6.726 3.368 -14.634 16.454 Atomic orbital electron populations 1.20386 0.83876 1.04924 1.04969 1.24908 0.99193 0.85282 1.00464 1.73632 0.88671 1.22749 1.17597 1.84645 1.21866 1.19751 1.66872 1.24152 0.95064 0.86806 1.10586 1.16473 0.80565 0.76933 0.75037 1.93314 1.90559 1.94593 1.35186 1.93297 1.65588 1.74321 1.80627 1.93335 1.95496 1.43420 1.80602 1.22350 0.91404 0.96972 1.05875 1.16774 0.78497 0.83247 0.84951 1.90858 1.50738 1.67053 1.31114 1.45968 1.68055 1.12352 1.08102 1.21769 1.01419 0.79007 0.98772 1.20586 0.94418 0.89157 0.89771 0.90516 1.22982 0.85267 0.98604 0.95295 1.86499 1.40838 1.33672 1.75958 1.42725 1.35474 1.55068 1.04918 1.19037 1.13439 1.24661 0.81065 0.89073 1.24654 0.98751 0.99942 0.95224 1.69691 1.38957 1.43102 1.05767 0.86576 0.83174 0.79799 0.79033 1.20957 1.21824 1.20377 0.88582 0.89222 0.89030 0.74994 0.90963 0.89996 0.94968 0.92614 0.78730 0.80120 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.49 36.01 0.38 -0.55 16 2 C 0.06 0.83 7.59 -79.76 -0.61 0.22 16 3 N -0.33 -4.38 12.01 34.78 0.42 -3.96 16 4 O 0.14 1.76 11.06 18.66 0.21 1.97 16 5 C -0.10 -1.28 6.85 -34.63 -0.24 -1.52 16 6 C 0.57 6.57 3.52 36.00 0.13 6.70 16 7 F -0.16 -1.80 17.30 2.25 0.04 -1.76 16 8 F -0.16 -1.71 17.30 2.25 0.04 -1.67 16 9 F -0.15 -1.82 16.09 2.25 0.04 -1.78 16 10 C -0.16 -2.23 6.19 -102.89 -0.64 -2.87 16 11 C 0.58 9.08 6.59 -12.53 -0.08 9.00 16 12 O -0.52 -9.39 17.11 5.27 0.09 -9.30 16 13 N -0.69 -10.57 5.38 -61.39 -0.33 -10.90 16 14 C 0.11 1.75 5.12 -4.04 -0.02 1.72 16 15 C 0.17 2.88 2.84 -67.93 -0.19 2.69 16 16 H 0.08 1.26 8.08 -51.92 -0.42 0.84 16 17 C 0.06 0.91 6.86 37.16 0.25 1.17 16 18 O -0.57 -8.70 12.64 -35.23 -0.45 -9.14 16 19 N -0.74 -15.56 4.31 -53.42 -0.23 -15.79 16 20 C -0.25 -6.45 10.41 -15.06 -0.16 -6.61 16 21 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 22 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 23 N -0.93 -27.60 13.97 55.49 0.78 -26.83 16 24 Si 0.88 20.96 27.74 -169.99 -4.71 16.24 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.41 6.39 8.12 -40.82 -0.33 6.06 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.37 7.39 -51.93 -0.38 0.99 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.37 3.94 9.12 45.56 0.42 4.35 16 37 H 0.37 7.92 5.66 -40.82 -0.23 7.69 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -31.32 351.19 -3.17 -34.49 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -3.08 Total: 12.99 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.27 Total: 10.16 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.63 Total: -57.48 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.15 Total: -16.47 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.32 -3.17 -34.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676589221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.869 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds