Wall clock time and date at job start Tue Mar 31 2020 19:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30020 * 127.33990 * 2 1 4 4 O 1.20650 * 112.30196 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.16032 * 359.75081 * 4 3 2 6 6 C 1.50697 * 126.82960 * 180.30108 * 5 4 3 7 7 F 1.39901 * 109.47253 * 270.10737 * 6 5 4 8 8 F 1.39901 * 109.47166 * 30.10933 * 6 5 4 9 9 F 1.39899 * 109.46918 * 150.11216 * 6 5 4 10 10 C 1.37365 * 106.33942 * 0.39544 * 5 4 3 11 11 C 1.47398 * 128.56206 * 179.90812 * 10 5 4 12 12 O 1.21604 * 119.99857 * 269.67357 * 11 10 5 13 13 N 1.34779 * 119.99899 * 89.67605 * 11 10 5 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 H 1.09008 * 109.47142 * 294.99240 * 15 14 13 17 17 C 1.53002 * 109.46776 * 174.99842 * 15 14 13 18 18 O 1.42895 * 109.47504 * 304.99727 * 17 15 14 19 19 N 1.46496 * 109.47449 * 54.99576 * 15 14 13 20 20 C 1.36941 * 120.00198 * 204.99613 * 19 15 14 21 21 H 1.07996 * 119.99379 * 0.02562 * 20 19 15 22 22 C 1.38810 * 119.99828 * 180.02562 * 20 19 15 23 23 N 1.31618 * 119.99768 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00221 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47022 * 89.99596 * 24 22 20 26 26 H 1.48501 * 109.47153 * 209.99829 * 24 22 20 27 27 H 1.48500 * 109.47069 * 329.99978 * 24 22 20 28 28 H 1.08995 * 109.47122 * 270.00005 * 1 2 3 29 29 H 1.08998 * 109.46449 * 29.99996 * 1 2 3 30 30 H 1.08992 * 109.47125 * 149.99885 * 1 2 3 31 31 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 33 33 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 34 34 H 1.09001 * 109.46966 * 65.00241 * 17 15 14 35 35 H 1.09007 * 109.46935 * 184.99698 * 17 15 14 36 36 H 0.96700 * 114.00507 * 180.02562 * 18 17 15 37 37 H 0.97002 * 119.99429 * 25.00168 * 19 15 14 38 38 H 0.96994 * 120.00390 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0063 6 6 4.9712 -1.3246 0.0148 7 9 5.3872 -1.5514 -1.3015 8 9 5.9253 -0.5454 0.6778 9 9 4.8279 -2.5492 0.6760 10 6 2.3991 -1.1697 0.0007 11 6 2.0400 -2.5992 0.0016 12 8 1.8918 -3.1896 -1.0511 13 7 1.8760 -3.2520 1.1693 14 6 1.5185 -4.6728 1.1703 15 6 1.3939 -5.1663 2.6131 16 1 2.3676 -5.1136 3.1005 17 6 0.8999 -6.6143 2.6159 18 8 -0.3194 -6.7032 1.8761 19 7 0.4393 -4.3232 3.3370 20 6 0.5210 -4.2103 4.6993 21 1 1.2897 -4.7425 5.2399 22 6 -0.3839 -3.4118 5.3851 23 7 -0.3050 -3.3030 6.6944 24 14 -1.7138 -2.4919 4.4498 25 1 -2.9250 -3.3445 4.3449 26 1 -2.0511 -1.2394 5.1728 27 1 -1.2223 -2.1605 3.0882 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9946 -2.7811 2.0090 32 1 2.2928 -5.2426 0.6565 33 1 0.5666 -4.8082 0.6569 34 1 1.6517 -7.2555 2.1557 35 1 0.7264 -6.9370 3.6426 36 1 -0.6912 -7.5949 1.8362 37 1 -0.2509 -3.8450 2.8512 38 1 -0.9371 -2.7448 7.1736 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676589221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:51 Heat of formation + Delta-G solvation = -174.966235 kcal Electronic energy + Delta-G solvation = -30528.753118 eV Core-core repulsion = 25573.877871 eV Total energy + Delta-G solvation = -4954.875247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.56140 -49.09572 -49.02779 -46.47241 -40.95882 -38.74256 -36.48120 -36.07107 -35.34576 -34.39928 -33.37052 -30.74293 -30.06606 -28.33997 -27.02537 -25.50351 -24.99213 -22.60243 -21.94329 -21.70363 -20.23077 -20.13099 -19.72969 -19.71370 -19.03858 -18.72724 -18.26621 -17.49403 -17.16389 -16.69724 -16.18758 -15.90434 -15.82849 -15.77889 -15.42730 -15.15217 -15.14332 -15.08796 -15.03199 -14.83101 -14.63124 -14.49650 -14.46433 -14.34044 -14.07622 -13.58199 -13.22114 -12.88178 -12.76344 -12.62836 -12.34706 -11.93292 -11.77441 -11.67876 -11.41788 -11.31883 -11.02547 -10.72522 -10.27014 -9.32695 -7.99580 -5.32678 -0.62922 0.37777 0.41410 0.97222 1.36969 1.43074 1.48275 1.59217 1.86612 2.16117 2.50067 2.66992 2.85715 2.89340 3.03025 3.32228 3.44698 3.45401 3.55783 3.71242 3.90022 4.11354 4.37519 4.44394 4.51286 4.53295 4.62753 4.78320 4.91978 4.96678 5.15639 5.23630 5.79856 6.19920 6.23464 6.56832 6.79783 7.05108 7.10636 7.84134 8.02993 9.21144 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004416 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.338183 B = 6339.310639 C = 7130.631377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.062 3.938 3 N -0.335 5.335 4 O 0.142 5.858 5 C -0.090 4.090 6 C 0.572 3.428 7 F -0.154 7.154 8 F -0.151 7.151 9 F -0.151 7.151 10 C -0.179 4.179 11 C 0.591 3.409 12 O -0.547 6.547 13 N -0.692 5.692 14 C 0.125 3.875 15 C 0.165 3.835 16 H 0.082 0.918 17 C 0.066 3.934 18 O -0.583 6.583 19 N -0.739 5.739 20 C -0.221 4.221 21 H 0.066 0.934 22 C -0.057 4.057 23 N -0.981 5.981 24 Si 0.943 3.057 25 H -0.290 1.290 26 H -0.301 1.301 27 H -0.246 1.246 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.413 0.587 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.388 0.612 37 H 0.365 0.635 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 2.424 -16.098 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 N -0.036 5.036 4 O 0.073 5.927 5 C -0.156 4.156 6 C 0.516 3.484 7 F -0.135 7.135 8 F -0.132 7.132 9 F -0.132 7.132 10 C -0.186 4.186 11 C 0.374 3.626 12 O -0.425 6.425 13 N -0.342 5.342 14 C 0.001 3.999 15 C 0.056 3.944 16 H 0.099 0.901 17 C -0.014 4.014 18 O -0.390 6.390 19 N -0.383 5.383 20 C -0.352 4.352 21 H 0.084 0.916 22 C -0.249 4.249 23 N -0.631 5.631 24 Si 0.772 3.228 25 H -0.217 1.217 26 H -0.228 1.228 27 H -0.171 1.171 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.250 0.750 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.237 0.763 37 H 0.198 0.802 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.863 3.881 -16.691 18.854 hybrid contribution -0.884 -0.660 0.633 1.271 sum 6.980 3.221 -16.058 17.804 Atomic orbital electron populations 1.20520 0.82422 1.06056 1.05336 1.25266 1.00139 0.84760 0.99715 1.73632 0.88832 1.22922 1.18223 1.84643 1.21783 1.19621 1.66653 1.24295 0.95223 0.86780 1.09333 1.16330 0.80257 0.76710 0.75090 1.93321 1.90469 1.94565 1.35106 1.93314 1.65233 1.74131 1.80502 1.93328 1.95507 1.43656 1.80696 1.22263 0.92228 0.96501 1.07597 1.16812 0.77717 0.83617 0.84420 1.90843 1.51966 1.67825 1.31884 1.45962 1.67791 1.12392 1.08065 1.21656 1.01625 0.79244 0.97353 1.20838 0.93623 0.89628 0.90275 0.90051 1.22776 0.86395 0.97595 0.94679 1.86441 1.40976 1.35862 1.75680 1.42678 1.36329 1.55968 1.03306 1.18996 1.11294 1.22032 0.82874 0.91590 1.25340 1.01621 1.02021 0.95904 1.69857 1.40498 1.45091 1.07679 0.85587 0.80110 0.77883 0.79225 1.21714 1.22842 1.17054 0.88437 0.87182 0.88878 0.75045 0.89057 0.90925 0.91181 0.94755 0.76301 0.80207 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 10.49 71.24 0.75 -0.95 16 2 C 0.06 1.53 7.59 45.16 0.34 1.87 16 3 N -0.34 -8.43 12.01 -44.78 -0.54 -8.97 16 4 O 0.14 3.38 11.06 77.01 0.85 4.23 16 5 C -0.09 -2.16 6.85 25.48 0.17 -1.99 16 6 C 0.57 12.35 3.52 71.24 0.25 12.60 16 7 F -0.15 -3.31 17.30 44.97 0.78 -2.53 16 8 F -0.15 -3.02 17.30 44.97 0.78 -2.24 16 9 F -0.15 -3.47 16.09 44.97 0.72 -2.75 16 10 C -0.18 -4.73 6.19 -18.74 -0.12 -4.84 16 11 C 0.59 17.34 6.59 86.65 0.57 17.91 16 12 O -0.55 -18.76 17.11 -4.04 -0.07 -18.83 16 13 N -0.69 -19.70 5.38 -466.40 -2.51 -22.21 16 14 C 0.12 3.51 5.12 86.38 0.44 3.95 16 15 C 0.16 5.21 2.84 44.99 0.13 5.34 16 16 H 0.08 2.52 8.08 -2.38 -0.02 2.50 16 17 C 0.07 1.86 6.86 71.98 0.49 2.36 16 18 O -0.58 -16.38 12.64 -148.98 -1.88 -18.26 16 19 N -0.74 -30.04 4.31 -322.94 -1.39 -31.43 16 20 C -0.22 -11.26 10.41 84.03 0.87 -10.38 16 21 H 0.07 3.66 8.06 -2.91 -0.02 3.64 16 22 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 23 N -0.98 -59.69 13.97 21.65 0.30 -59.39 16 24 Si 0.94 43.06 27.74 68.60 1.90 44.96 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 27 H -0.25 -9.79 6.52 99.48 0.65 -9.14 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.41 12.02 8.12 -92.71 -0.75 11.27 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 2.25 7.39 -2.39 -0.02 2.23 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.39 7.26 9.12 -74.06 -0.68 6.59 16 37 H 0.36 15.01 5.66 -92.71 -0.52 14.48 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -66.95 351.19 2.48 -64.47 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.84 Total: 29.74 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 4.38 Total: 23.20 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -4.14 Total: -121.99 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.10 Total: -32.86 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 2.28 Total: -7.52 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.90 Total: 44.96 kcal Total: -66.95 2.48 -64.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676589221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.492 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds