Wall clock time and date at job start Tue Mar 31 2020 19:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30011 * 127.32988 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82848 * 179.97438 * 5 4 3 7 7 F 1.39899 * 109.46714 * 270.01993 * 6 5 4 8 8 F 1.39899 * 109.47032 * 30.01845 * 6 5 4 9 9 F 1.39902 * 109.47136 * 150.02237 * 6 5 4 10 10 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 11 11 C 1.47402 * 128.56691 * 180.02562 * 10 5 4 12 12 O 1.21607 * 119.99920 * 269.96018 * 11 10 5 13 13 N 1.34772 * 120.00077 * 89.95458 * 11 10 5 14 14 C 1.46501 * 120.00154 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47217 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46694 * 65.00241 * 15 14 13 17 17 C 1.53005 * 109.47017 * 184.99800 * 15 14 13 18 18 O 1.42906 * 109.46664 * 55.00413 * 17 15 14 19 19 N 1.46495 * 109.47517 * 304.99920 * 15 14 13 20 20 C 1.36935 * 120.00019 * 154.99822 * 19 15 14 21 21 H 1.08002 * 120.00084 * 0.02562 * 20 19 15 22 22 C 1.38817 * 119.99850 * 180.02562 * 20 19 15 23 23 N 1.31614 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99722 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47002 * 89.99624 * 24 22 20 26 26 H 1.48501 * 109.46954 * 209.99499 * 24 22 20 27 27 H 1.48499 * 109.46981 * 329.99535 * 24 22 20 28 28 H 1.08996 * 109.46955 * 90.02599 * 1 2 3 29 29 H 1.09004 * 109.46954 * 210.02330 * 1 2 3 30 30 H 1.08994 * 109.47581 * 330.01970 * 1 2 3 31 31 H 0.96996 * 120.00252 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47190 * 300.00460 * 14 13 11 33 33 H 1.09012 * 109.47186 * 59.99913 * 14 13 11 34 34 H 1.08999 * 109.46934 * 175.00302 * 17 15 14 35 35 H 1.08994 * 109.47125 * 295.00544 * 17 15 14 36 36 H 0.96707 * 113.99734 * 180.02562 * 18 17 15 37 37 H 0.97006 * 119.99632 * 335.00649 * 19 15 14 38 38 H 0.96995 * 120.00059 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 9 5.3805 -1.5478 -1.3187 8 9 5.9288 -0.5467 0.6603 9 9 4.8316 -2.5506 0.6593 10 6 2.3993 -1.1695 0.0003 11 6 2.0402 -2.5991 0.0006 12 8 1.8916 -3.1890 -1.0524 13 7 1.8767 -3.2526 1.1680 14 6 1.5203 -4.6736 1.1684 15 6 1.3974 -5.1682 2.6110 16 1 0.5645 -4.6619 3.0988 17 6 1.1484 -6.6778 2.6131 18 8 2.1809 -7.3318 1.8725 19 7 2.6374 -4.8768 3.3345 20 6 2.6191 -4.7393 4.6969 21 1 1.6905 -4.8461 5.2379 22 6 3.7940 -4.4627 5.3824 23 7 4.9257 -4.3330 4.7231 24 14 3.7691 -4.2759 7.2409 25 1 4.0031 -5.5984 7.8745 26 1 4.8366 -3.3315 7.6578 27 1 2.4478 -3.7493 7.6677 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 1.9949 -2.7821 2.0079 32 1 0.5686 -4.8096 0.6548 33 1 2.2951 -5.2426 0.6543 34 1 1.1492 -7.0448 3.6394 35 1 0.1828 -6.8874 2.1530 36 1 2.0868 -8.2934 1.8315 37 1 3.4715 -4.7811 2.8485 38 1 5.7467 -4.1401 5.2021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676589222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:55 Heat of formation + Delta-G solvation = -152.870432 kcal Electronic energy + Delta-G solvation = -30672.780824 eV Core-core repulsion = 25718.863722 eV Total energy + Delta-G solvation = -4953.917101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.28885 -47.81903 -47.76411 -45.33227 -39.54963 -37.21023 -35.02450 -34.96334 -33.63014 -33.16352 -31.40594 -29.18834 -28.50070 -27.04499 -25.72690 -24.10069 -23.54478 -21.43559 -20.62911 -20.17370 -18.91023 -18.83187 -18.44083 -17.86252 -17.83182 -17.29628 -16.65612 -16.07251 -15.95498 -14.92437 -14.79381 -14.61340 -14.49432 -14.17536 -14.15179 -13.86423 -13.85694 -13.82899 -13.68116 -13.60008 -13.47131 -13.32004 -13.09515 -12.88987 -12.44453 -12.09534 -11.72750 -11.49927 -10.92790 -10.89829 -10.71530 -10.37850 -10.33037 -10.14300 -10.06273 -9.82315 -9.42446 -9.02764 -8.84998 -7.08626 -5.84386 -3.15806 0.55208 1.49832 1.58130 2.31053 2.81765 3.15470 3.36754 3.40117 3.41759 3.44480 3.73966 4.08751 4.12571 4.18274 4.48862 4.63117 4.77593 4.87295 5.11824 5.18649 5.29635 5.32821 5.42863 5.49316 5.69099 5.79158 5.93641 5.96766 6.22039 6.43499 6.61494 6.65458 7.58684 7.59893 7.66365 8.14478 8.19028 8.31734 9.44331 9.98200 10.34543 11.36567 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010128 B = 0.004581 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.998296 B = 6110.677654 C = 6955.534345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.329 5.329 4 O 0.135 5.865 5 C -0.090 4.090 6 C 0.561 3.439 7 F -0.159 7.159 8 F -0.158 7.158 9 F -0.135 7.135 10 C -0.161 4.161 11 C 0.584 3.416 12 O -0.524 6.524 13 N -0.689 5.689 14 C 0.117 3.883 15 C 0.166 3.834 16 H 0.067 0.933 17 C 0.060 3.940 18 O -0.560 6.560 19 N -0.713 5.713 20 C -0.252 4.252 21 H 0.070 0.930 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.413 0.587 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.365 0.635 37 H 0.390 0.610 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 5.741 -9.692 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 N -0.030 5.030 4 O 0.066 5.934 5 C -0.155 4.155 6 C 0.505 3.495 7 F -0.140 7.140 8 F -0.139 7.139 9 F -0.116 7.116 10 C -0.169 4.169 11 C 0.365 3.635 12 O -0.401 6.401 13 N -0.340 5.340 14 C -0.007 4.007 15 C 0.054 3.946 16 H 0.085 0.915 17 C -0.022 4.022 18 O -0.363 6.363 19 N -0.355 5.355 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.735 3.265 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.209 0.791 37 H 0.224 0.776 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.528 7.254 -10.297 14.674 hybrid contribution 0.375 -1.151 1.496 1.924 sum -7.153 6.103 -8.801 12.879 Atomic orbital electron populations 1.20310 0.84003 1.04847 1.04398 1.24862 0.99066 0.85450 1.01064 1.73614 0.88777 1.22930 1.17680 1.84636 1.21746 1.19997 1.66976 1.24274 0.95429 0.86450 1.09390 1.16548 0.80421 0.77471 0.75035 1.93296 1.90779 1.94711 1.35186 1.93292 1.65364 1.74455 1.80759 1.93438 1.95386 1.42429 1.80348 1.22329 0.91371 0.96926 1.06237 1.16761 0.78487 0.83240 0.84963 1.90849 1.50926 1.67169 1.31174 1.45932 1.67910 1.12113 1.08056 1.21716 1.00970 0.79216 0.98803 1.20594 0.92426 0.91488 0.90063 0.91541 1.23027 0.88174 0.96141 0.94839 1.86570 1.51190 1.22813 1.75774 1.42383 1.04555 1.84272 1.04284 1.19177 0.94040 1.41973 0.83134 0.91209 1.24749 0.95521 1.02206 0.97732 1.69671 0.98352 1.54335 1.34424 0.86256 0.77003 0.77474 0.85747 1.21719 1.21745 1.20806 0.89082 0.89162 0.89316 0.74959 0.91484 0.89958 0.93208 0.95499 0.79065 0.77552 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.49 36.01 0.38 -0.32 16 2 C 0.06 0.72 7.59 -79.77 -0.61 0.12 16 3 N -0.33 -4.47 12.01 34.78 0.42 -4.06 16 4 O 0.14 1.88 11.06 18.65 0.21 2.09 16 5 C -0.09 -1.32 6.85 -34.63 -0.24 -1.56 16 6 C 0.56 8.47 3.52 36.01 0.13 8.60 16 7 F -0.16 -2.31 17.30 2.25 0.04 -2.27 16 8 F -0.16 -2.31 17.30 2.25 0.04 -2.27 16 9 F -0.14 -2.39 16.09 2.25 0.04 -2.35 16 10 C -0.16 -2.39 6.19 -102.89 -0.64 -3.03 16 11 C 0.58 9.60 6.59 -12.53 -0.08 9.52 16 12 O -0.52 -9.96 17.11 5.27 0.09 -9.87 16 13 N -0.69 -11.14 5.38 -61.39 -0.33 -11.47 16 14 C 0.12 1.91 5.12 -4.04 -0.02 1.89 16 15 C 0.17 2.93 2.84 -67.93 -0.19 2.74 16 16 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 17 C 0.06 0.97 6.86 37.16 0.25 1.22 16 18 O -0.56 -9.47 12.64 -35.23 -0.45 -9.92 16 19 N -0.71 -16.24 4.51 -53.42 -0.24 -16.48 16 20 C -0.25 -6.41 9.93 -15.06 -0.15 -6.56 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 22 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 23 N -0.92 -26.56 13.06 55.49 0.72 -25.84 16 24 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.41 6.84 8.12 -40.82 -0.33 6.51 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.54 7.39 -51.92 -0.38 1.16 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.36 4.39 9.12 45.56 0.42 4.81 16 37 H 0.39 9.96 7.80 -40.82 -0.32 9.64 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -31.24 354.31 -3.53 -34.77 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -3.12 Total: 13.63 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -1.26 Total: 12.40 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.57 Total: -57.85 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.15 Total: -17.70 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.11 Total: -6.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.24 -3.53 -34.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676589222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.102 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds