Wall clock time and date at job start Tue Mar 31 2020 19:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30011 * 127.32988 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82848 * 179.97438 * 5 4 3 7 7 F 1.39899 * 109.46714 * 270.01993 * 6 5 4 8 8 F 1.39899 * 109.47032 * 30.01845 * 6 5 4 9 9 F 1.39902 * 109.47136 * 150.02237 * 6 5 4 10 10 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 11 11 C 1.47402 * 128.56691 * 180.02562 * 10 5 4 12 12 O 1.21607 * 119.99920 * 269.96018 * 11 10 5 13 13 N 1.34772 * 120.00077 * 89.95458 * 11 10 5 14 14 C 1.46501 * 120.00154 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47217 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46694 * 65.00241 * 15 14 13 17 17 C 1.53005 * 109.47017 * 184.99800 * 15 14 13 18 18 O 1.42906 * 109.46664 * 55.00413 * 17 15 14 19 19 N 1.46495 * 109.47517 * 304.99920 * 15 14 13 20 20 C 1.36935 * 120.00019 * 154.99822 * 19 15 14 21 21 H 1.08002 * 120.00084 * 0.02562 * 20 19 15 22 22 C 1.38817 * 119.99850 * 180.02562 * 20 19 15 23 23 N 1.31614 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99722 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47002 * 89.99624 * 24 22 20 26 26 H 1.48501 * 109.46954 * 209.99499 * 24 22 20 27 27 H 1.48499 * 109.46981 * 329.99535 * 24 22 20 28 28 H 1.08996 * 109.46955 * 90.02599 * 1 2 3 29 29 H 1.09004 * 109.46954 * 210.02330 * 1 2 3 30 30 H 1.08994 * 109.47581 * 330.01970 * 1 2 3 31 31 H 0.96996 * 120.00252 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47190 * 300.00460 * 14 13 11 33 33 H 1.09012 * 109.47186 * 59.99913 * 14 13 11 34 34 H 1.08999 * 109.46934 * 175.00302 * 17 15 14 35 35 H 1.08994 * 109.47125 * 295.00544 * 17 15 14 36 36 H 0.96707 * 113.99734 * 180.02562 * 18 17 15 37 37 H 0.97006 * 119.99632 * 335.00649 * 19 15 14 38 38 H 0.96995 * 120.00059 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 9 5.3805 -1.5478 -1.3187 8 9 5.9288 -0.5467 0.6603 9 9 4.8316 -2.5506 0.6593 10 6 2.3993 -1.1695 0.0003 11 6 2.0402 -2.5991 0.0006 12 8 1.8916 -3.1890 -1.0524 13 7 1.8767 -3.2526 1.1680 14 6 1.5203 -4.6736 1.1684 15 6 1.3974 -5.1682 2.6110 16 1 0.5645 -4.6619 3.0988 17 6 1.1484 -6.6778 2.6131 18 8 2.1809 -7.3318 1.8725 19 7 2.6374 -4.8768 3.3345 20 6 2.6191 -4.7393 4.6969 21 1 1.6905 -4.8461 5.2379 22 6 3.7940 -4.4627 5.3824 23 7 4.9257 -4.3330 4.7231 24 14 3.7691 -4.2759 7.2409 25 1 4.0031 -5.5984 7.8745 26 1 4.8366 -3.3315 7.6578 27 1 2.4478 -3.7493 7.6677 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 1.9949 -2.7821 2.0079 32 1 0.5686 -4.8096 0.6548 33 1 2.2951 -5.2426 0.6543 34 1 1.1492 -7.0448 3.6394 35 1 0.1828 -6.8874 2.1530 36 1 2.0868 -8.2934 1.8315 37 1 3.4715 -4.7811 2.8485 38 1 5.7467 -4.1401 5.2021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676589222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:54 Heat of formation + Delta-G solvation = -177.277289 kcal Electronic energy + Delta-G solvation = -30673.839185 eV Core-core repulsion = 25718.863722 eV Total energy + Delta-G solvation = -4954.975462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.54373 -49.07398 -49.03172 -46.40675 -40.89301 -38.61985 -36.40694 -36.02021 -35.26241 -34.34323 -33.09955 -30.25690 -29.92489 -28.29293 -26.97153 -25.69326 -25.04568 -22.55148 -21.89336 -21.59629 -20.11612 -20.04285 -19.68387 -19.40841 -18.98713 -18.66026 -18.12472 -17.41621 -17.23762 -16.47181 -16.17994 -15.85478 -15.82438 -15.71035 -15.41463 -15.24377 -15.13005 -15.12197 -14.92675 -14.78633 -14.52995 -14.46347 -14.38052 -14.11780 -13.66101 -13.52977 -13.05152 -12.76162 -12.68328 -12.65420 -12.24813 -11.92113 -11.73940 -11.60449 -11.37323 -11.27511 -10.94963 -10.68152 -10.20436 -8.97498 -7.86892 -5.15981 -0.61258 0.39224 0.47177 1.02402 1.50713 1.51455 1.59148 1.60999 1.93578 2.21094 2.59064 2.73001 2.86669 2.90776 3.06757 3.44972 3.49640 3.58418 3.65834 3.92301 4.01951 4.19126 4.45759 4.56328 4.59054 4.62271 4.64622 4.84844 5.02097 5.02555 5.23913 5.29573 5.58245 6.26694 6.31250 6.57769 6.85732 7.10632 7.40059 8.12853 8.37001 9.35260 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010128 B = 0.004581 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.998296 B = 6110.677654 C = 6955.534345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.071 3.929 3 N -0.337 5.337 4 O 0.132 5.868 5 C -0.090 4.090 6 C 0.563 3.437 7 F -0.155 7.155 8 F -0.155 7.155 9 F -0.153 7.153 10 C -0.177 4.177 11 C 0.591 3.409 12 O -0.551 6.551 13 N -0.686 5.686 14 C 0.127 3.873 15 C 0.160 3.840 16 H 0.085 0.915 17 C 0.064 3.936 18 O -0.585 6.585 19 N -0.723 5.723 20 C -0.235 4.235 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.962 5.962 24 Si 0.963 3.037 25 H -0.294 1.294 26 H -0.304 1.304 27 H -0.266 1.266 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.412 0.588 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.385 0.615 37 H 0.373 0.627 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 5.986 -9.671 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 N -0.040 5.040 4 O 0.066 5.934 5 C -0.156 4.156 6 C 0.507 3.493 7 F -0.136 7.136 8 F -0.136 7.136 9 F -0.135 7.135 10 C -0.184 4.184 11 C 0.374 3.626 12 O -0.431 6.431 13 N -0.335 5.335 14 C 0.003 3.997 15 C 0.051 3.949 16 H 0.103 0.897 17 C -0.016 4.016 18 O -0.391 6.391 19 N -0.363 5.363 20 C -0.366 4.366 21 H 0.100 0.900 22 C -0.262 4.262 23 N -0.612 5.612 24 Si 0.793 3.207 25 H -0.222 1.222 26 H -0.231 1.231 27 H -0.191 1.191 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.249 0.751 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.205 0.795 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.082 7.474 -10.275 16.220 hybrid contribution 1.062 -1.268 1.406 2.171 sum -9.020 6.206 -8.869 14.090 Atomic orbital electron populations 1.20572 0.81152 1.06206 1.05869 1.25427 1.00517 0.84030 0.99047 1.73618 0.88653 1.23123 1.18559 1.84646 1.22190 1.19332 1.67234 1.24155 0.95047 0.86935 1.09449 1.16553 0.80871 0.76917 0.74957 1.93298 1.90804 1.94684 1.34864 1.93293 1.65368 1.74232 1.80755 1.93401 1.95530 1.43728 1.80792 1.22306 0.92085 0.96704 1.07337 1.16831 0.77680 0.83697 0.84436 1.90832 1.52272 1.67978 1.31973 1.45899 1.67614 1.12029 1.07956 1.21608 1.01341 0.78894 0.97849 1.20897 0.90709 0.93031 0.90291 0.89732 1.22882 0.89830 0.94369 0.94560 1.86526 1.51974 1.24861 1.75772 1.42507 1.05618 1.84541 1.03664 1.19583 0.94011 1.38625 0.84414 0.89951 1.25436 0.95590 1.03859 1.01314 1.69833 0.98698 1.57192 1.35514 0.85302 0.77105 0.76685 0.81577 1.22219 1.23092 1.19067 0.87399 0.88334 0.87383 0.75101 0.88808 0.92473 0.94606 0.91318 0.76681 0.79520 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.49 71.24 0.75 -0.46 16 2 C 0.07 1.69 7.59 45.16 0.34 2.03 16 3 N -0.34 -8.68 12.01 -44.78 -0.54 -9.22 16 4 O 0.13 3.59 11.06 76.98 0.85 4.44 16 5 C -0.09 -2.63 6.85 25.48 0.17 -2.46 16 6 C 0.56 17.24 3.52 71.24 0.25 17.50 16 7 F -0.16 -4.56 17.30 44.97 0.78 -3.79 16 8 F -0.16 -4.62 17.30 44.97 0.78 -3.84 16 9 F -0.15 -5.60 16.09 44.97 0.72 -4.87 16 10 C -0.18 -5.11 6.19 -18.75 -0.12 -5.23 16 11 C 0.59 18.99 6.59 86.66 0.57 19.56 16 12 O -0.55 -20.58 17.11 -4.05 -0.07 -20.65 16 13 N -0.69 -21.51 5.38 -466.38 -2.51 -24.02 16 14 C 0.13 3.96 5.12 86.38 0.44 4.40 16 15 C 0.16 5.35 2.84 44.99 0.13 5.47 16 16 H 0.08 2.55 8.08 -2.39 -0.02 2.53 16 17 C 0.06 1.92 6.86 71.98 0.49 2.41 16 18 O -0.58 -18.90 12.64 -148.98 -1.88 -20.78 16 19 N -0.72 -32.55 4.51 -322.94 -1.46 -34.00 16 20 C -0.23 -11.69 9.93 84.04 0.83 -10.86 16 21 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.96 -56.75 13.06 21.65 0.28 -56.47 16 24 Si 0.96 43.97 29.55 68.60 2.03 46.00 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.41 13.34 8.12 -92.71 -0.75 12.59 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.12 7.39 -2.38 -0.02 2.10 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.39 8.60 9.12 -74.05 -0.68 7.92 16 37 H 0.37 19.32 7.80 -92.70 -0.72 18.60 16 38 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -67.35 354.31 2.34 -65.00 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.98 Total: 33.08 kcal Atomic # 6 Polarization: 24.78 SS G_CDS: 4.34 Total: 29.11 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -4.22 Total: -123.71 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.10 Total: -36.99 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 2.28 Total: -12.50 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.35 2.34 -65.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676589222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.273 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds