Wall clock time and date at job start Tue Mar 31 2020 20:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46505 * 119.99769 * 2 1 4 4 C 1.53008 * 109.46841 * 270.00000 * 3 2 1 5 5 H 1.09003 * 109.46540 * 60.00145 * 4 3 2 6 6 O 1.42895 * 109.47012 * 300.00419 * 4 3 2 7 7 C 1.52999 * 109.46797 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.46950 * 185.00338 * 7 4 3 9 9 C 1.36938 * 120.00178 * 180.02562 * 8 7 4 10 10 H 1.07999 * 119.99586 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00169 * 179.97438 * 9 8 7 12 12 N 1.31612 * 120.00020 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99964 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47440 * 59.99515 * 13 11 9 15 15 H 1.48503 * 109.47155 * 180.02562 * 13 11 9 16 16 H 1.48511 * 109.47051 * 299.99714 * 13 11 9 17 17 C 1.34770 * 120.00214 * 180.02562 * 2 1 3 18 18 O 1.21606 * 120.00316 * 184.21756 * 17 2 1 19 19 C 1.47426 * 120.00048 * 4.20981 * 17 2 1 20 20 N 1.36069 * 126.44516 * 353.98073 * 19 17 2 21 21 C 1.29936 * 108.47379 * 180.30288 * 20 19 17 22 22 O 1.34050 * 109.24377 * 359.72994 * 21 20 19 23 23 C 1.34254 * 108.22919 * 0.02562 * 22 21 20 24 24 C 1.50701 * 126.52919 * 180.02562 * 23 22 21 25 25 F 1.39906 * 109.46917 * 270.02032 * 24 23 22 26 26 F 1.39892 * 109.46922 * 30.02237 * 24 23 22 27 27 F 1.39898 * 109.47162 * 150.02709 * 24 23 22 28 28 H 1.09001 * 109.46556 * 264.24945 * 1 2 3 29 29 H 1.09000 * 109.47080 * 24.25354 * 1 2 3 30 30 H 1.08994 * 109.46749 * 144.25471 * 1 2 3 31 31 H 1.08997 * 109.47235 * 29.99863 * 3 2 1 32 32 H 1.08992 * 109.46950 * 150.00601 * 3 2 1 33 33 H 0.96699 * 114.00132 * 299.99553 * 6 4 3 34 34 H 1.09003 * 109.46985 * 304.99813 * 7 4 3 35 35 H 1.08997 * 109.47095 * 65.00233 * 7 4 3 36 36 H 0.96999 * 120.00433 * 359.97438 * 8 7 4 37 37 H 0.97003 * 119.99965 * 180.02562 * 12 11 9 38 38 H 1.08002 * 125.37770 * 179.71829 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5000 1.8407 -1.9563 6 8 3.2247 0.7145 -2.1162 7 6 3.2180 3.0352 -1.4426 8 7 3.3578 3.5183 -2.8185 9 6 4.0130 4.6947 -3.0679 10 1 4.4262 5.2664 -2.2501 11 6 4.1459 5.1522 -4.3717 12 7 3.6428 4.4552 -5.3682 13 14 5.0402 6.7565 -4.7119 14 1 6.4386 6.6573 -4.2221 15 1 5.0445 7.0206 -6.1732 16 1 4.3478 7.8676 -4.0106 17 6 2.1390 -1.1671 -0.0005 18 8 3.3526 -1.1686 0.0769 19 6 1.4049 -2.4421 -0.0948 20 7 0.0536 -2.6005 -0.0718 21 6 -0.2141 -3.8680 -0.1717 22 8 0.9326 -4.5557 -0.2668 23 6 1.9510 -3.6820 -0.2237 24 6 3.4196 -4.0117 -0.2986 25 9 3.9155 -4.2275 0.9917 26 9 3.5995 -5.1671 -1.0667 27 9 4.1071 -2.9466 -0.8902 28 1 -0.3632 -0.1030 1.0225 29 1 -0.3633 0.9370 -0.4221 30 1 -0.3632 -0.8340 -0.6003 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1385 0.5137 33 1 4.0872 0.5461 -1.7128 34 1 2.6710 3.7709 -0.8530 35 1 4.2063 2.8837 -1.0085 36 1 2.9870 3.0046 -3.5530 37 1 3.7360 4.7747 -6.2794 38 1 -1.2042 -4.2994 -0.1771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677090045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:32 Heat of formation + Delta-G solvation = -166.906389 kcal Electronic energy + Delta-G solvation = -30139.779912 eV Core-core repulsion = 25185.254166 eV Total energy + Delta-G solvation = -4954.525746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.44274 -48.02259 -47.84251 -44.20116 -40.01099 -37.34536 -35.85557 -35.09410 -33.96046 -32.06498 -31.28748 -29.56733 -27.20315 -26.83883 -25.56699 -24.05169 -23.11777 -22.27355 -21.16629 -20.40192 -19.01500 -18.94371 -18.54344 -17.78546 -17.36396 -17.12149 -16.79217 -16.36229 -15.88714 -15.26053 -15.10202 -14.81768 -14.75006 -14.46535 -14.37734 -14.33167 -14.02397 -13.99739 -13.75716 -13.61667 -13.28745 -12.97771 -12.86270 -12.77272 -12.46258 -12.10457 -12.01699 -11.52689 -11.01197 -10.91706 -10.77450 -10.63987 -10.29232 -10.16556 -10.03184 -9.75345 -9.60393 -8.86093 -8.56095 -6.88980 -5.71698 -3.01142 0.13362 1.23087 1.43081 2.52798 2.59874 2.93393 3.23782 3.40929 3.46608 3.50612 3.52094 3.81422 3.94261 4.08024 4.49146 4.60130 4.78794 4.84435 5.01237 5.11668 5.21768 5.27197 5.48172 5.57246 5.67439 5.75245 5.92063 6.01047 6.25076 6.38550 6.54914 6.63495 6.76119 7.14065 7.71356 7.87250 8.20103 8.46526 9.57709 10.15765 10.51337 11.50663 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.002743 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.653611 B =10203.634717 C =10843.936599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.584 5.584 3 C 0.083 3.917 4 C 0.086 3.914 5 H 0.097 0.903 6 O -0.548 6.548 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.590 3.410 18 O -0.509 6.509 19 C 0.029 3.971 20 N -0.461 5.461 21 C 0.217 3.783 22 O -0.171 6.171 23 C -0.086 4.086 24 C 0.565 3.435 25 F -0.160 7.160 26 F -0.168 7.168 27 F -0.122 7.122 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.375 0.625 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.388 0.612 37 H 0.256 0.744 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 -21.057 15.156 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.315 5.315 3 C -0.040 4.040 4 C 0.025 3.975 5 H 0.115 0.885 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.375 3.625 18 O -0.384 6.384 19 C -0.093 4.093 20 N -0.190 5.190 21 C -0.010 4.010 22 O -0.057 6.057 23 C -0.143 4.143 24 C 0.510 3.490 25 F -0.141 7.141 26 F -0.150 7.150 27 F -0.103 7.103 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.222 0.778 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -10.666 -20.451 14.872 27.444 hybrid contribution 1.041 0.196 -0.176 1.074 sum -9.625 -20.256 14.696 26.812 Atomic orbital electron populations 1.22283 0.78125 1.04391 1.02611 1.47442 1.07781 1.05167 1.71138 1.22410 0.98470 0.83934 0.99139 1.22506 0.95854 0.88424 0.90698 0.88529 1.86551 1.33093 1.58870 1.56829 1.21228 0.96811 0.92359 0.89799 1.42237 1.68045 1.25307 1.01401 1.19180 1.28236 0.97862 0.92169 0.91304 1.24756 1.01484 0.99033 0.95613 1.69671 1.50269 1.39278 0.98629 0.86260 0.79576 0.83396 0.76875 1.21252 1.21674 1.21295 1.16636 0.86170 0.81668 0.77994 1.90900 1.11989 1.86129 1.49419 1.21865 0.89675 0.94447 1.03341 1.71185 1.12267 1.17258 1.18338 1.28667 0.90818 0.85855 0.95665 1.84376 1.14847 1.38149 1.68293 1.23174 0.89848 0.89246 1.12060 1.16462 0.82109 0.75394 0.75077 1.93281 1.88339 1.94550 1.37975 1.93260 1.95867 1.50195 1.75650 1.93468 1.79173 1.54408 1.83212 0.92537 0.91061 0.88093 0.89070 0.88995 0.77778 0.95735 0.96008 0.77747 0.93464 0.71574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.66 59.85 0.58 1.25 16 2 N -0.58 -7.39 2.83 -182.84 -0.52 -7.90 16 3 C 0.08 1.08 5.14 -4.03 -0.02 1.06 16 4 C 0.09 1.44 3.27 -26.73 -0.09 1.35 16 5 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 6 O -0.55 -10.37 12.18 -38.11 -0.46 -10.83 16 7 C 0.13 2.54 5.90 -4.04 -0.02 2.52 16 8 N -0.73 -19.00 5.55 -59.91 -0.33 -19.33 16 9 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 13 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.59 8.30 6.99 -12.52 -0.09 8.21 16 18 O -0.51 -8.18 11.99 2.39 0.03 -8.15 16 19 C 0.03 0.34 6.64 -83.02 -0.55 -0.21 16 20 N -0.46 -4.11 7.83 -11.48 -0.09 -4.20 16 21 C 0.22 1.18 13.19 51.96 0.69 1.86 16 22 O -0.17 -1.41 10.72 6.52 0.07 -1.34 16 23 C -0.09 -0.95 6.74 -35.08 -0.24 -1.19 16 24 C 0.57 6.76 3.29 36.01 0.12 6.88 16 25 F -0.16 -1.90 17.30 2.25 0.04 -1.86 16 26 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16 27 F -0.12 -1.76 13.67 2.25 0.03 -1.73 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.64 8.03 -51.93 -0.42 0.23 16 30 H 0.10 1.01 5.22 -51.93 -0.27 0.73 16 31 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.09 1.24 7.37 -51.93 -0.38 0.85 16 33 H 0.37 6.62 8.59 45.56 0.39 7.01 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.39 10.97 7.67 -40.82 -0.31 10.66 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.27 -0.20 8.06 -52.49 -0.42 -0.62 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -35.67 341.33 -3.29 -38.97 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.07 Total: 9.41 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 0.13 Total: 14.13 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.21 Total: -59.69 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.37 Total: -20.32 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.44 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.67 -3.29 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677090045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.938 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds