Wall clock time and date at job start Tue Mar 31 2020 20:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46505 * 119.99769 * 2 1 4 4 C 1.53008 * 109.46841 * 270.00000 * 3 2 1 5 5 H 1.09003 * 109.46540 * 60.00145 * 4 3 2 6 6 O 1.42895 * 109.47012 * 300.00419 * 4 3 2 7 7 C 1.52999 * 109.46797 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.46950 * 185.00338 * 7 4 3 9 9 C 1.36938 * 120.00178 * 180.02562 * 8 7 4 10 10 H 1.07999 * 119.99586 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00169 * 179.97438 * 9 8 7 12 12 N 1.31612 * 120.00020 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99964 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47440 * 59.99515 * 13 11 9 15 15 H 1.48503 * 109.47155 * 180.02562 * 13 11 9 16 16 H 1.48511 * 109.47051 * 299.99714 * 13 11 9 17 17 C 1.34770 * 120.00214 * 180.02562 * 2 1 3 18 18 O 1.21606 * 120.00316 * 184.21756 * 17 2 1 19 19 C 1.47426 * 120.00048 * 4.20981 * 17 2 1 20 20 N 1.36069 * 126.44516 * 353.98073 * 19 17 2 21 21 C 1.29936 * 108.47379 * 180.30288 * 20 19 17 22 22 O 1.34050 * 109.24377 * 359.72994 * 21 20 19 23 23 C 1.34254 * 108.22919 * 0.02562 * 22 21 20 24 24 C 1.50701 * 126.52919 * 180.02562 * 23 22 21 25 25 F 1.39906 * 109.46917 * 270.02032 * 24 23 22 26 26 F 1.39892 * 109.46922 * 30.02237 * 24 23 22 27 27 F 1.39898 * 109.47162 * 150.02709 * 24 23 22 28 28 H 1.09001 * 109.46556 * 264.24945 * 1 2 3 29 29 H 1.09000 * 109.47080 * 24.25354 * 1 2 3 30 30 H 1.08994 * 109.46749 * 144.25471 * 1 2 3 31 31 H 1.08997 * 109.47235 * 29.99863 * 3 2 1 32 32 H 1.08992 * 109.46950 * 150.00601 * 3 2 1 33 33 H 0.96699 * 114.00132 * 299.99553 * 6 4 3 34 34 H 1.09003 * 109.46985 * 304.99813 * 7 4 3 35 35 H 1.08997 * 109.47095 * 65.00233 * 7 4 3 36 36 H 0.96999 * 120.00433 * 359.97438 * 8 7 4 37 37 H 0.97003 * 119.99965 * 180.02562 * 12 11 9 38 38 H 1.08002 * 125.37770 * 179.71829 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5000 1.8407 -1.9563 6 8 3.2247 0.7145 -2.1162 7 6 3.2180 3.0352 -1.4426 8 7 3.3578 3.5183 -2.8185 9 6 4.0130 4.6947 -3.0679 10 1 4.4262 5.2664 -2.2501 11 6 4.1459 5.1522 -4.3717 12 7 3.6428 4.4552 -5.3682 13 14 5.0402 6.7565 -4.7119 14 1 6.4386 6.6573 -4.2221 15 1 5.0445 7.0206 -6.1732 16 1 4.3478 7.8676 -4.0106 17 6 2.1390 -1.1671 -0.0005 18 8 3.3526 -1.1686 0.0769 19 6 1.4049 -2.4421 -0.0948 20 7 0.0536 -2.6005 -0.0718 21 6 -0.2141 -3.8680 -0.1717 22 8 0.9326 -4.5557 -0.2668 23 6 1.9510 -3.6820 -0.2237 24 6 3.4196 -4.0117 -0.2986 25 9 3.9155 -4.2275 0.9917 26 9 3.5995 -5.1671 -1.0667 27 9 4.1071 -2.9466 -0.8902 28 1 -0.3632 -0.1030 1.0225 29 1 -0.3633 0.9370 -0.4221 30 1 -0.3632 -0.8340 -0.6003 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1385 0.5137 33 1 4.0872 0.5461 -1.7128 34 1 2.6710 3.7709 -0.8530 35 1 4.2063 2.8837 -1.0085 36 1 2.9870 3.0046 -3.5530 37 1 3.7360 4.7747 -6.2794 38 1 -1.2042 -4.2994 -0.1771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677090045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:32 Heat of formation + Delta-G solvation = -196.334523 kcal Electronic energy + Delta-G solvation = -30141.056011 eV Core-core repulsion = 25185.254166 eV Total energy + Delta-G solvation = -4955.801846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.38061 -48.93390 -48.83398 -44.85993 -41.04766 -38.73635 -36.74675 -36.14877 -35.76199 -33.21931 -32.81626 -31.03041 -28.15333 -27.98954 -26.78527 -25.26601 -24.27034 -23.40415 -22.61130 -21.30147 -19.89303 -19.82929 -19.47626 -19.23182 -18.67037 -18.09101 -17.88587 -17.31998 -16.84668 -16.60231 -16.42172 -16.18171 -15.77939 -15.70567 -15.39070 -15.28328 -15.23686 -15.01464 -14.95797 -14.92466 -14.53928 -14.26093 -14.04877 -13.81654 -13.70090 -13.49608 -12.98099 -12.75779 -12.73896 -12.65445 -12.21133 -12.08485 -11.83734 -11.69110 -11.36327 -11.03392 -10.95407 -10.77541 -9.63042 -9.01381 -7.94427 -5.24497 -0.65080 0.48562 0.82822 1.46597 1.50691 1.56688 1.62600 1.76562 1.98706 2.46682 2.55715 2.74933 2.96657 3.02389 3.28332 3.37304 3.52396 3.71820 3.76808 4.04048 4.12256 4.17943 4.35866 4.49526 4.50526 4.65285 4.75761 4.83741 4.92798 5.18365 5.22887 5.42728 5.47877 5.97945 6.19858 6.26046 6.78447 6.87643 7.32498 8.08661 8.31425 9.28860 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.002743 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.653611 B =10203.634717 C =10843.936599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.585 5.585 3 C 0.094 3.906 4 C 0.096 3.904 5 H 0.090 0.910 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.250 4.250 10 H 0.078 0.922 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.274 1.274 17 C 0.578 3.422 18 O -0.540 6.540 19 C 0.017 3.983 20 N -0.481 5.481 21 C 0.252 3.748 22 O -0.169 6.169 23 C -0.099 4.099 24 C 0.564 3.436 25 F -0.163 7.163 26 F -0.166 7.166 27 F -0.141 7.141 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.377 0.623 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 -21.332 16.554 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.315 5.315 3 C -0.029 4.029 4 C 0.036 3.964 5 H 0.108 0.892 6 O -0.373 6.373 7 C -0.003 4.003 8 N -0.384 5.384 9 C -0.381 4.381 10 H 0.096 0.904 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.364 3.636 18 O -0.417 6.417 19 C -0.105 4.105 20 N -0.210 5.210 21 C 0.026 3.974 22 O -0.056 6.056 23 C -0.158 4.158 24 C 0.508 3.492 25 F -0.144 7.144 26 F -0.147 7.147 27 F -0.122 7.122 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.225 0.775 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.343 0.657 Dipole moment (debyes) X Y Z Total from point charges -12.437 -20.717 16.333 29.165 hybrid contribution 1.483 0.180 -0.547 1.591 sum -10.953 -20.537 15.786 28.123 Atomic orbital electron populations 1.22446 0.76283 1.04903 1.03822 1.47552 1.08910 1.04548 1.70488 1.22225 0.99262 0.85070 0.96342 1.22420 0.94523 0.86506 0.92970 0.89193 1.86524 1.33524 1.59378 1.57878 1.21431 0.97568 0.94345 0.86915 1.42460 1.67820 1.24758 1.03385 1.19646 1.27414 0.98543 0.92539 0.90382 1.25643 1.03027 1.02747 0.95546 1.69847 1.52258 1.41233 0.98728 0.85159 0.78529 0.79450 0.76277 1.20471 1.22190 1.19958 1.17054 0.86150 0.82771 0.77577 1.90874 1.13343 1.86777 1.50714 1.21639 0.91087 0.93595 1.04163 1.71160 1.10422 1.19170 1.20211 1.30084 0.91576 0.84736 0.90990 1.84412 1.14972 1.37794 1.68404 1.22849 0.89799 0.89562 1.13545 1.16533 0.82858 0.74941 0.74846 1.93266 1.88551 1.94522 1.38053 1.93255 1.95952 1.49926 1.75592 1.93422 1.79846 1.55395 1.83557 0.90815 0.90237 0.88049 0.86042 0.89439 0.77491 0.93897 0.95850 0.79477 0.94030 0.65685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 9.66 127.77 1.23 2.41 16 2 N -0.58 -14.13 2.83 -850.65 -2.41 -16.53 16 3 C 0.09 2.34 5.14 86.38 0.44 2.78 16 4 C 0.10 3.19 3.27 30.60 0.10 3.29 16 5 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 6 O -0.57 -21.90 12.18 -146.22 -1.78 -23.69 16 7 C 0.12 4.93 5.90 86.38 0.51 5.44 16 8 N -0.74 -39.14 5.55 -343.46 -1.91 -41.05 16 9 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 10 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 12 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 13 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 17 C 0.58 16.16 6.99 86.66 0.61 16.76 16 18 O -0.54 -17.78 11.99 -1.29 -0.02 -17.80 16 19 C 0.02 0.38 6.64 40.41 0.27 0.65 16 20 N -0.48 -7.38 7.83 -305.14 -2.39 -9.77 16 21 C 0.25 1.79 13.19 130.52 1.72 3.51 16 22 O -0.17 -2.39 10.72 0.41 0.00 -2.39 16 23 C -0.10 -2.14 6.74 25.19 0.17 -1.97 16 24 C 0.56 13.73 3.29 71.24 0.23 13.97 16 25 F -0.16 -3.94 17.30 44.97 0.78 -3.16 16 26 F -0.17 -3.75 17.30 44.97 0.78 -2.97 16 27 F -0.14 -4.27 13.67 44.97 0.61 -3.65 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 30 H 0.10 1.81 5.22 -2.39 -0.01 1.80 16 31 H 0.12 2.28 8.07 -2.39 -0.02 2.26 16 32 H 0.09 2.29 7.37 -2.39 -0.02 2.27 16 33 H 0.38 13.83 8.59 -74.06 -0.64 13.19 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.37 21.60 7.67 -92.71 -0.71 20.89 16 37 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.33 -2.44 8.06 -2.91 -0.02 -2.46 16 Total: -1.00 -79.36 341.33 2.39 -76.97 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.19 Total: 26.97 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.59 Total: 29.24 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -6.42 Total: -128.59 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -1.79 Total: -43.87 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 2.17 Total: -9.78 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.36 2.39 -76.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677090045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.369 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds