Wall clock time and date at job start Tue Mar 31 2020 20:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99830 * 2 1 4 4 C 1.53008 * 109.47317 * 270.00296 * 3 2 1 5 5 H 1.09001 * 109.46556 * 305.00395 * 4 3 2 6 6 O 1.42893 * 109.46955 * 64.99813 * 4 3 2 7 7 C 1.52997 * 109.47122 * 184.99987 * 4 3 2 8 8 N 1.46503 * 109.46913 * 179.97438 * 7 4 3 9 9 C 1.36936 * 119.99825 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00373 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99618 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00112 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00426 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46921 * 89.99717 * 13 11 9 15 15 H 1.48501 * 109.47163 * 209.99997 * 13 11 9 16 16 H 1.48497 * 109.46888 * 330.00069 * 13 11 9 17 17 C 1.34772 * 120.00156 * 180.02562 * 2 1 3 18 18 O 1.21608 * 119.99810 * 184.16288 * 17 2 1 19 19 C 1.47423 * 119.99747 * 4.15849 * 17 2 1 20 20 N 1.36069 * 126.45322 * 353.98089 * 19 17 2 21 21 C 1.29930 * 108.47797 * 180.30057 * 20 19 17 22 22 O 1.34054 * 109.24449 * 359.73537 * 21 20 19 23 23 C 1.34263 * 108.22673 * 359.97438 * 22 21 20 24 24 C 1.50701 * 126.52666 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.46948 * 270.02821 * 24 23 22 26 26 F 1.39901 * 109.46856 * 30.02390 * 24 23 22 27 27 F 1.39891 * 109.47290 * 150.02671 * 24 23 22 28 28 H 1.09001 * 109.46556 * 264.24395 * 1 2 3 29 29 H 1.09000 * 109.47080 * 24.24804 * 1 2 3 30 30 H 1.08994 * 109.46749 * 144.24921 * 1 2 3 31 31 H 1.09000 * 109.47519 * 29.99817 * 3 2 1 32 32 H 1.08999 * 109.47030 * 150.00088 * 3 2 1 33 33 H 0.96703 * 114.00297 * 60.00693 * 6 4 3 34 34 H 1.08994 * 109.47366 * 299.99667 * 7 4 3 35 35 H 1.09003 * 109.47092 * 59.99839 * 7 4 3 36 36 H 0.96994 * 120.00086 * 0.02562 * 8 7 4 37 37 H 0.96996 * 120.00423 * 179.97438 * 12 11 9 38 38 H 1.07996 * 125.37775 * 179.70766 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4426 5 1 2.9642 0.9132 -1.9816 6 8 1.2060 1.9936 -2.0813 7 6 3.3237 2.9682 -1.4443 8 7 3.5683 3.3908 -2.8256 9 6 4.3285 4.5016 -3.0773 10 1 4.7480 5.0660 -2.2576 11 6 4.5598 4.9023 -4.3860 12 7 5.2908 5.9698 -4.6281 13 14 3.8335 3.9267 -5.8038 14 1 2.4907 4.4652 -6.1387 15 1 4.7217 4.0395 -6.9886 16 1 3.7108 2.4998 -5.4112 17 6 2.1390 -1.1671 -0.0005 18 8 3.3526 -1.1685 0.0759 19 6 1.4047 -2.4421 -0.0937 20 7 0.0535 -2.6006 -0.0695 21 6 -0.2143 -3.8681 -0.1687 22 8 0.9324 -4.5558 -0.2643 23 6 1.9509 -3.6819 -0.2234 24 6 3.4194 -4.0117 -0.2996 25 9 3.9167 -4.2261 0.9903 26 9 3.5984 -5.1680 -1.0666 27 9 4.1062 -2.9473 -0.8933 28 1 -0.3632 -0.1031 1.0225 29 1 -0.3633 0.9370 -0.4221 30 1 -0.3632 -0.8340 -0.6004 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 0.6955 2.6950 -1.6542 34 1 2.8120 3.7654 -0.9053 35 1 4.2745 2.7522 -0.9570 36 1 3.1912 2.8842 -3.5618 37 1 5.4528 6.2496 -5.5425 38 1 -1.2043 -4.2995 -0.1731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677090046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:35 Heat of formation + Delta-G solvation = -163.531285 kcal Electronic energy + Delta-G solvation = -30077.353800 eV Core-core repulsion = 25122.974409 eV Total energy + Delta-G solvation = -4954.379391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.52234 -48.09295 -47.93591 -44.28301 -40.13125 -37.70418 -35.92599 -35.18274 -34.14822 -32.16686 -31.50304 -29.99344 -27.33033 -26.92948 -25.77779 -24.09423 -23.10783 -22.16891 -21.29934 -20.50699 -19.09759 -19.02179 -18.62885 -17.88694 -17.69189 -17.43499 -16.83013 -16.43998 -16.12596 -15.33180 -15.22452 -15.00460 -14.84116 -14.56495 -14.47384 -14.39748 -14.10639 -14.07906 -13.92339 -13.59941 -13.35150 -13.29719 -12.93796 -12.83818 -12.40293 -12.31974 -12.10806 -11.70183 -11.22833 -11.12492 -10.84632 -10.80702 -10.46995 -10.17484 -10.12176 -9.88164 -9.56140 -8.89327 -8.67399 -7.21390 -5.74551 -3.10020 0.03899 1.14660 1.34263 2.44635 2.50669 2.77815 3.15998 3.32297 3.43230 3.49346 3.49738 3.72848 3.86028 3.99528 4.39920 4.55155 4.63737 4.70681 4.83789 4.97712 5.12934 5.19123 5.43463 5.49253 5.54294 5.68110 5.81429 5.85174 5.92831 6.26169 6.46710 6.55510 6.61852 7.02187 7.73397 7.85590 8.02019 8.44396 9.24277 9.96631 10.16835 11.43654 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003055 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.578868 B = 9162.513562 C = 9798.666474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.582 5.582 3 C 0.085 3.915 4 C 0.082 3.918 5 H 0.100 0.900 6 O -0.554 6.554 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.090 0.910 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.581 3.419 18 O -0.509 6.509 19 C 0.027 3.973 20 N -0.460 5.460 21 C 0.218 3.782 22 O -0.170 6.170 23 C -0.085 4.085 24 C 0.565 3.435 25 F -0.159 7.159 26 F -0.168 7.168 27 F -0.124 7.124 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.370 0.630 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.366 0.634 37 H 0.260 0.740 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 -24.010 13.787 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.313 5.313 3 C -0.037 4.037 4 C 0.021 3.979 5 H 0.118 0.882 6 O -0.359 6.359 7 C 0.003 3.997 8 N -0.395 5.395 9 C -0.376 4.376 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.365 3.635 18 O -0.384 6.384 19 C -0.095 4.095 20 N -0.189 5.189 21 C -0.009 4.009 22 O -0.056 6.056 23 C -0.143 4.143 24 C 0.509 3.491 25 F -0.140 7.140 26 F -0.149 7.149 27 F -0.105 7.105 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.217 0.783 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -14.531 -23.814 13.520 31.001 hybrid contribution -0.304 -0.787 -0.764 1.138 sum -14.835 -24.601 12.756 31.432 Atomic orbital electron populations 1.22276 0.77752 1.04694 1.02243 1.47496 1.08111 1.04952 1.70776 1.22354 0.98831 0.83947 0.98601 1.22622 0.85212 0.98334 0.91704 0.88177 1.86594 1.32403 1.59302 1.57585 1.21185 0.96902 0.92900 0.88739 1.42570 1.62956 1.32705 1.01316 1.19051 1.23516 1.01360 0.93643 0.89259 1.24657 0.99860 0.97576 0.96946 1.69706 1.43076 1.25935 1.19508 0.86507 0.78741 0.80103 0.82968 1.21028 1.21781 1.20284 1.16801 0.86264 0.81913 0.78485 1.90964 1.11924 1.86189 1.49308 1.21828 0.89759 0.94345 1.03605 1.71198 1.12143 1.17262 1.18274 1.28691 0.90826 0.85822 0.95561 1.84386 1.14835 1.38100 1.68242 1.23185 0.89869 0.89242 1.11973 1.16463 0.82074 0.75364 0.75159 1.93286 1.88259 1.94544 1.37886 1.93265 1.95872 1.50059 1.75696 1.93459 1.79269 1.54596 1.83184 0.92785 0.90703 0.88184 0.89326 0.88161 0.78305 0.95252 0.94504 0.80043 0.93051 0.71508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.42 59.85 0.56 1.23 16 2 N -0.58 -6.97 2.84 -182.84 -0.52 -7.48 16 3 C 0.09 1.04 5.07 -4.04 -0.02 1.02 16 4 C 0.08 1.27 3.30 -26.73 -0.09 1.18 16 5 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 6 O -0.55 -8.36 12.02 -35.23 -0.42 -8.79 16 7 C 0.13 2.50 5.92 -4.04 -0.02 2.47 16 8 N -0.75 -18.43 5.30 -59.91 -0.32 -18.75 16 9 C -0.25 -7.15 10.47 -15.06 -0.16 -7.31 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 11 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 12 N -0.93 -29.93 13.97 55.49 0.78 -29.16 16 13 Si 0.89 23.09 27.74 -169.99 -4.71 18.37 16 14 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 16 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 17 C 0.58 7.93 7.55 -12.52 -0.09 7.83 16 18 O -0.51 -8.28 12.91 5.27 0.07 -8.21 16 19 C 0.03 0.30 6.64 -83.02 -0.55 -0.25 16 20 N -0.46 -3.84 7.83 -11.48 -0.09 -3.93 16 21 C 0.22 1.07 13.19 51.96 0.69 1.75 16 22 O -0.17 -1.31 10.72 6.48 0.07 -1.24 16 23 C -0.08 -0.90 6.74 -35.08 -0.24 -1.14 16 24 C 0.56 6.57 3.29 36.01 0.12 6.69 16 25 F -0.16 -1.84 17.30 2.25 0.04 -1.81 16 26 F -0.17 -1.81 17.30 2.25 0.04 -1.77 16 27 F -0.12 -1.77 13.68 2.25 0.03 -1.74 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.62 7.24 -51.93 -0.38 0.24 16 30 H 0.10 0.94 5.22 -51.93 -0.27 0.67 16 31 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.10 1.31 7.37 -51.93 -0.38 0.92 16 33 H 0.37 4.26 9.04 45.56 0.41 4.67 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.37 9.10 5.40 -40.82 -0.22 8.88 16 37 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 38 H 0.27 -0.34 8.06 -52.49 -0.42 -0.76 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -37.01 338.78 -2.80 -39.81 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -2.96 Total: 6.02 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 0.10 Total: 13.55 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.15 Total: -59.32 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.29 Total: -18.24 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.31 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.01 -2.80 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677090046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.718 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds