Wall clock time and date at job start Tue Mar 31 2020 20:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99830 * 2 1 4 4 C 1.53008 * 109.47317 * 270.00296 * 3 2 1 5 5 H 1.09001 * 109.46556 * 305.00395 * 4 3 2 6 6 O 1.42893 * 109.46955 * 64.99813 * 4 3 2 7 7 C 1.52997 * 109.47122 * 184.99987 * 4 3 2 8 8 N 1.46503 * 109.46913 * 179.97438 * 7 4 3 9 9 C 1.36936 * 119.99825 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00373 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99618 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00112 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00426 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46921 * 89.99717 * 13 11 9 15 15 H 1.48501 * 109.47163 * 209.99997 * 13 11 9 16 16 H 1.48497 * 109.46888 * 330.00069 * 13 11 9 17 17 C 1.34772 * 120.00156 * 180.02562 * 2 1 3 18 18 O 1.21608 * 119.99810 * 184.16288 * 17 2 1 19 19 C 1.47423 * 119.99747 * 4.15849 * 17 2 1 20 20 N 1.36069 * 126.45322 * 353.98089 * 19 17 2 21 21 C 1.29930 * 108.47797 * 180.30057 * 20 19 17 22 22 O 1.34054 * 109.24449 * 359.73537 * 21 20 19 23 23 C 1.34263 * 108.22673 * 359.97438 * 22 21 20 24 24 C 1.50701 * 126.52666 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.46948 * 270.02821 * 24 23 22 26 26 F 1.39901 * 109.46856 * 30.02390 * 24 23 22 27 27 F 1.39891 * 109.47290 * 150.02671 * 24 23 22 28 28 H 1.09001 * 109.46556 * 264.24395 * 1 2 3 29 29 H 1.09000 * 109.47080 * 24.24804 * 1 2 3 30 30 H 1.08994 * 109.46749 * 144.24921 * 1 2 3 31 31 H 1.09000 * 109.47519 * 29.99817 * 3 2 1 32 32 H 1.08999 * 109.47030 * 150.00088 * 3 2 1 33 33 H 0.96703 * 114.00297 * 60.00693 * 6 4 3 34 34 H 1.08994 * 109.47366 * 299.99667 * 7 4 3 35 35 H 1.09003 * 109.47092 * 59.99839 * 7 4 3 36 36 H 0.96994 * 120.00086 * 0.02562 * 8 7 4 37 37 H 0.96996 * 120.00423 * 179.97438 * 12 11 9 38 38 H 1.07996 * 125.37775 * 179.70766 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4426 5 1 2.9642 0.9132 -1.9816 6 8 1.2060 1.9936 -2.0813 7 6 3.3237 2.9682 -1.4443 8 7 3.5683 3.3908 -2.8256 9 6 4.3285 4.5016 -3.0773 10 1 4.7480 5.0660 -2.2576 11 6 4.5598 4.9023 -4.3860 12 7 5.2908 5.9698 -4.6281 13 14 3.8335 3.9267 -5.8038 14 1 2.4907 4.4652 -6.1387 15 1 4.7217 4.0395 -6.9886 16 1 3.7108 2.4998 -5.4112 17 6 2.1390 -1.1671 -0.0005 18 8 3.3526 -1.1685 0.0759 19 6 1.4047 -2.4421 -0.0937 20 7 0.0535 -2.6006 -0.0695 21 6 -0.2143 -3.8681 -0.1687 22 8 0.9324 -4.5558 -0.2643 23 6 1.9509 -3.6819 -0.2234 24 6 3.4194 -4.0117 -0.2996 25 9 3.9167 -4.2261 0.9903 26 9 3.5984 -5.1680 -1.0666 27 9 4.1062 -2.9473 -0.8933 28 1 -0.3632 -0.1031 1.0225 29 1 -0.3633 0.9370 -0.4221 30 1 -0.3632 -0.8340 -0.6004 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 0.6955 2.6950 -1.6542 34 1 2.8120 3.7654 -0.9053 35 1 4.2745 2.7522 -0.9570 36 1 3.1912 2.8842 -3.5618 37 1 5.4528 6.2496 -5.5425 38 1 -1.2043 -4.2995 -0.1731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677090046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:35 Heat of formation + Delta-G solvation = -194.893730 kcal Electronic energy + Delta-G solvation = -30078.713778 eV Core-core repulsion = 25122.974409 eV Total energy + Delta-G solvation = -4955.739368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.42802 -48.97084 -48.89713 -44.89346 -41.11646 -38.96787 -36.79324 -36.25116 -35.76901 -33.51712 -32.87154 -31.37867 -28.32897 -27.98804 -26.84161 -25.11481 -24.20079 -23.36450 -22.78333 -21.34974 -19.93565 -19.88040 -19.82267 -19.52755 -18.69972 -18.11144 -17.86468 -17.25848 -17.11054 -16.59565 -16.42329 -16.31604 -15.85095 -15.75531 -15.43736 -15.32523 -15.31348 -15.12590 -15.03930 -14.95785 -14.64722 -14.39853 -14.12478 -13.86554 -13.74045 -13.54261 -13.26710 -12.87442 -12.78087 -12.67601 -12.31915 -12.03974 -11.87372 -11.73396 -11.49710 -11.07700 -11.03926 -10.81932 -9.66456 -9.33427 -8.05890 -5.38865 -0.70359 0.44273 0.78710 1.36616 1.38197 1.46135 1.58088 1.72772 1.87821 2.42307 2.45645 2.70489 2.92354 2.97393 3.24774 3.24988 3.35224 3.60335 3.71017 3.93925 4.05072 4.10064 4.21539 4.42286 4.51214 4.66228 4.74151 4.85045 4.90885 5.11866 5.24353 5.42857 5.71645 5.94215 6.14574 6.18304 6.78149 6.84970 7.05180 7.81454 7.99629 9.15522 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003055 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.578868 B = 9162.513562 C = 9798.666474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.580 5.580 3 C 0.093 3.907 4 C 0.101 3.899 5 H 0.071 0.929 6 O -0.562 6.562 7 C 0.126 3.874 8 N -0.755 5.755 9 C -0.236 4.236 10 H 0.061 0.939 11 C -0.061 4.061 12 N -0.982 5.982 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.294 1.294 16 H -0.265 1.265 17 C 0.569 3.431 18 O -0.547 6.547 19 C 0.017 3.983 20 N -0.479 5.479 21 C 0.253 3.747 22 O -0.168 6.168 23 C -0.098 4.098 24 C 0.563 3.437 25 F -0.163 7.163 26 F -0.165 7.165 27 F -0.145 7.145 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.388 0.612 34 H 0.049 0.951 35 H 0.030 0.970 36 H 0.366 0.634 37 H 0.259 0.741 38 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 -25.873 14.196 34.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.310 5.310 3 C -0.030 4.030 4 C 0.040 3.960 5 H 0.089 0.911 6 O -0.369 6.369 7 C -0.001 4.001 8 N -0.401 5.401 9 C -0.367 4.367 10 H 0.079 0.921 11 C -0.252 4.252 12 N -0.632 5.632 13 Si 0.783 3.217 14 H -0.200 1.200 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.355 3.645 18 O -0.425 6.425 19 C -0.105 4.105 20 N -0.207 5.207 21 C 0.028 3.972 22 O -0.055 6.055 23 C -0.157 4.157 24 C 0.508 3.492 25 F -0.144 7.144 26 F -0.146 7.146 27 F -0.126 7.126 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.238 0.762 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.199 0.801 37 H 0.068 0.932 38 H 0.344 0.656 Dipole moment (debyes) X Y Z Total from point charges -18.014 -25.686 13.976 34.345 hybrid contribution 0.675 -0.239 -0.784 1.062 sum -17.338 -25.925 13.192 33.864 Atomic orbital electron populations 1.22442 0.75759 1.05353 1.03385 1.47613 1.09275 1.04273 1.69844 1.22218 0.99427 0.85145 0.96194 1.22238 0.84735 0.95486 0.93511 0.91104 1.86560 1.31917 1.60216 1.58205 1.21417 0.97613 0.95134 0.85944 1.42609 1.62359 1.31451 1.03674 1.19074 1.22814 1.01895 0.92897 0.92099 1.25452 1.01006 0.98944 0.99827 1.69869 1.45235 1.28077 1.20025 0.85399 0.78030 0.79062 0.79163 1.19962 1.22024 1.19039 1.17237 0.86141 0.83146 0.78008 1.90937 1.13622 1.86930 1.51029 1.21569 0.91170 0.93385 1.04372 1.71177 1.10209 1.19158 1.20137 1.30112 0.91560 0.84700 0.90857 1.84423 1.14952 1.37731 1.68350 1.22824 0.89737 0.89586 1.13535 1.16551 0.82915 0.74902 0.74879 1.93268 1.88510 1.94524 1.38064 1.93262 1.95965 1.49748 1.75611 1.93411 1.79986 1.55635 1.83537 0.91215 0.89546 0.88180 0.85756 0.89310 0.76209 0.93305 0.95207 0.80082 0.93220 0.65611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.42 127.77 1.20 2.30 16 2 N -0.58 -12.96 2.84 -850.65 -2.41 -15.38 16 3 C 0.09 2.13 5.07 86.38 0.44 2.57 16 4 C 0.10 3.03 3.30 30.60 0.10 3.13 16 5 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 6 O -0.56 -15.57 12.02 -148.98 -1.79 -17.36 16 7 C 0.13 4.70 5.92 86.38 0.51 5.21 16 8 N -0.76 -36.75 5.30 -343.46 -1.82 -38.57 16 9 C -0.24 -13.86 10.47 84.03 0.88 -12.98 16 10 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 12 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 13 Si 0.96 47.86 27.74 68.60 1.90 49.76 16 14 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 16 H -0.27 -12.60 6.52 99.48 0.65 -11.96 16 17 C 0.57 15.34 7.55 86.66 0.65 16.00 16 18 O -0.55 -18.37 12.91 -4.06 -0.05 -18.42 16 19 C 0.02 0.36 6.64 40.41 0.27 0.63 16 20 N -0.48 -6.57 7.83 -305.15 -2.39 -8.96 16 21 C 0.25 1.42 13.19 130.52 1.72 3.14 16 22 O -0.17 -2.14 10.72 0.29 0.00 -2.14 16 23 C -0.10 -2.00 6.74 25.19 0.17 -1.83 16 24 C 0.56 13.30 3.29 71.24 0.23 13.53 16 25 F -0.16 -3.87 17.30 44.97 0.78 -3.09 16 26 F -0.16 -3.55 17.30 44.97 0.78 -2.77 16 27 F -0.14 -4.32 13.68 44.97 0.62 -3.70 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.12 7.24 -2.39 -0.02 1.10 16 30 H 0.10 1.59 5.22 -2.39 -0.01 1.58 16 31 H 0.12 1.95 8.07 -2.39 -0.02 1.93 16 32 H 0.09 2.28 7.37 -2.39 -0.02 2.26 16 33 H 0.39 7.62 9.04 -74.06 -0.67 6.95 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.37 17.74 5.40 -92.71 -0.50 17.24 16 37 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 38 H 0.33 -2.93 8.06 -2.91 -0.02 -2.96 16 Total: -1.00 -83.47 338.78 2.49 -80.98 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.07 Total: 15.01 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 6.65 Total: 28.48 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -6.32 Total: -126.75 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.84 Total: -37.92 kcal Atomic # 9 Polarization: -11.73 SS G_CDS: 2.17 Total: -9.56 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.90 Total: 49.76 kcal Total: -83.47 2.49 -80.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677090046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.916 kcal (2) G-P(sol) polarization free energy of solvation -83.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds