Wall clock time and date at job start Tue Mar 31 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48505 * 109.47199 * 270.00761 * 3 2 1 5 5 H 1.48503 * 109.47285 * 30.00223 * 3 2 1 6 6 H 1.48493 * 109.47152 * 150.00180 * 3 2 1 7 7 C 1.38811 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99753 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00033 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47236 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47162 * 304.99974 * 11 10 9 13 13 O 1.42894 * 109.47120 * 65.00313 * 11 10 9 14 14 C 1.53001 * 109.47194 * 185.00220 * 11 10 9 15 15 N 1.46501 * 109.47457 * 179.97438 * 14 11 10 16 16 C 1.34777 * 120.00109 * 179.97438 * 15 14 11 17 17 O 1.21745 * 119.99692 * 0.02562 * 16 15 14 18 18 C 1.46210 * 119.99672 * 179.97438 * 16 15 14 19 19 S 1.75813 * 125.47929 * 354.59463 * 18 16 15 20 20 C 1.70567 * 91.67233 * 180.02562 * 19 18 16 21 21 C 1.33589 * 111.16819 * 0.02562 * 20 19 18 22 22 C 1.37332 * 125.47328 * 174.29365 * 18 16 15 23 23 N 1.39966 * 123.48416 * 359.97438 * 22 18 16 24 24 C 1.36153 * 125.94587 * 131.03058 * 23 22 18 25 25 C 1.35367 * 106.04503 * 180.02562 * 24 23 22 26 26 N 1.33784 * 106.53700 * 359.97438 * 25 24 23 27 27 N 1.28599 * 109.07469 * 359.73799 * 26 25 24 28 28 H 0.97005 * 120.00062 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99955 * 359.97438 * 9 7 2 30 30 H 1.09010 * 109.47020 * 59.99739 * 10 9 7 31 31 H 1.09002 * 109.46999 * 299.99859 * 10 9 7 32 32 H 0.96695 * 114.00617 * 60.00008 * 13 11 10 33 33 H 1.09007 * 109.47115 * 300.00334 * 14 11 10 34 34 H 1.09001 * 109.47347 * 59.99962 * 14 11 10 35 35 H 0.96995 * 119.99647 * 359.97438 * 15 14 11 36 36 H 1.08000 * 124.42086 * 179.97438 * 20 19 18 37 37 H 1.08000 * 122.46220 * 180.02562 * 21 20 19 38 38 H 1.07994 * 126.97528 * 359.97438 * 24 23 22 39 39 H 1.07997 * 126.72696 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8196 -0.0008 12 1 0.3807 -4.7130 0.8418 13 8 0.3202 -4.8115 -1.2209 14 6 1.8248 -6.1411 0.1238 15 7 0.8728 -7.2547 0.1253 16 6 1.3189 -8.5225 0.2259 17 8 2.5129 -8.7423 0.3159 18 6 0.3686 -9.6337 0.2279 19 16 -1.3826 -9.4788 0.2420 20 6 -1.5824 -11.1728 0.2363 21 6 -0.4018 -11.7977 0.2251 22 6 0.7006 -10.9662 0.2132 23 7 2.0199 -11.4332 0.1935 24 6 2.5419 -12.3886 1.0111 25 6 3.8386 -12.5249 0.6471 26 7 4.0449 -11.6644 -0.3562 27 7 2.9495 -11.0382 -0.6048 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 2.6855 -3.7149 0.8879 31 1 2.6840 -3.7141 -0.8922 32 1 0.8652 -4.9027 -2.0144 33 1 2.5081 -6.2478 -0.7188 34 1 2.3921 -6.1474 1.0546 35 1 -0.0785 -7.0794 0.0539 36 1 -2.5387 -11.6747 0.2419 37 1 -0.3159 -12.8743 0.2196 38 1 2.0263 -12.9276 1.7921 39 1 4.5641 -13.1967 1.0815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699050924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:37 Heat of formation + Delta-G solvation = 80.246735 kcal Electronic energy + Delta-G solvation = -25619.194231 eV Core-core repulsion = 21692.288211 eV Total energy + Delta-G solvation = -3926.906020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50612 -40.09372 -38.62195 -37.54649 -34.51808 -34.05378 -33.81695 -31.45707 -31.26263 -30.52223 -28.90843 -26.40993 -25.13603 -23.18066 -22.87982 -22.48558 -21.58957 -21.37297 -20.11930 -19.15837 -17.78937 -17.19462 -16.61332 -16.34083 -16.13389 -15.94089 -15.44726 -15.14815 -14.95319 -14.93483 -14.48127 -14.31841 -13.90599 -13.68472 -13.63098 -13.17743 -12.97736 -12.69330 -12.36312 -11.91227 -11.81224 -11.75631 -11.21873 -10.98434 -10.84237 -10.82859 -10.68571 -10.36407 -10.19109 -9.84176 -9.61039 -9.57709 -9.51150 -9.21165 -9.12187 -8.92261 -6.96244 -5.78115 -3.07846 -0.32169 0.61104 1.03521 1.20702 1.81245 2.17780 2.47874 2.77713 2.87076 3.43031 3.48177 3.49799 4.08324 4.29619 4.33199 4.51471 4.53123 4.67590 4.74894 4.81704 4.92737 5.00194 5.16592 5.18405 5.22459 5.53586 5.54120 5.56661 5.73997 5.90192 5.94473 6.12758 6.23805 6.46401 6.48557 6.63705 7.21243 7.67219 7.86641 7.94153 8.36075 8.39981 9.51795 10.07596 10.43420 11.44249 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.002257 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.161354 B =12400.553544 C =13595.723730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.713 5.713 16 C 0.578 3.422 17 O -0.502 6.502 18 C -0.247 4.247 19 S 0.291 5.709 20 C -0.224 4.224 21 C -0.141 4.141 22 C 0.167 3.833 23 N -0.234 5.234 24 C -0.052 4.052 25 C -0.046 4.046 26 N -0.269 5.269 27 N -0.028 5.028 28 H 0.255 0.745 29 H 0.388 0.612 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.375 0.625 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.184 0.816 37 H 0.157 0.843 38 H 0.190 0.810 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 -29.930 2.905 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.366 5.366 16 C 0.362 3.638 17 O -0.378 6.378 18 C -0.370 4.370 19 S 0.558 5.442 20 C -0.363 4.363 21 C -0.173 4.173 22 C 0.059 3.941 23 N -0.023 5.023 24 C -0.200 4.200 25 C -0.201 4.201 26 N -0.136 5.136 27 N -0.007 5.007 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.222 0.778 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.202 0.798 37 H 0.174 0.826 38 H 0.207 0.793 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.631 -27.714 2.255 28.370 hybrid contribution 0.744 -1.132 0.631 1.494 sum -4.887 -28.846 2.886 29.399 Atomic orbital electron populations 1.69678 1.05112 1.25697 1.57382 1.24762 0.95546 0.97747 1.02810 0.86172 0.78641 0.83698 0.77560 1.21652 1.21727 1.20732 1.19218 0.91022 0.84067 1.43149 0.91183 1.42229 1.06053 0.99383 1.89392 1.21194 0.93454 0.86484 0.98999 1.22408 0.94619 0.91706 0.88361 0.87657 1.86562 1.37572 1.96222 1.15448 1.22184 0.92013 0.85391 1.03673 1.45734 1.11093 1.05166 1.74567 1.16680 0.87278 0.81738 0.78089 1.90964 1.14819 1.83909 1.48088 1.24878 0.99790 0.96657 1.15723 1.83437 0.94935 1.01607 1.64195 1.25156 1.03087 1.00045 1.07967 1.19621 0.89547 1.01817 1.06309 1.16634 0.81610 0.90688 1.05140 1.44059 1.07870 1.26382 1.23981 1.23818 0.96476 0.97885 1.01790 1.23605 0.95365 1.02494 0.98622 1.75155 1.16192 1.07105 1.15156 1.78631 0.91385 1.17464 1.13257 0.93470 0.77729 0.95310 0.95759 0.77804 0.90484 0.90090 0.76341 0.79824 0.82591 0.79297 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.26 5.55 -59.91 -0.33 -18.59 16 10 C 0.13 2.45 5.90 -4.04 -0.02 2.43 16 11 C 0.09 1.34 3.09 -26.73 -0.08 1.26 16 12 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 13 O -0.55 -8.46 13.03 -35.23 -0.46 -8.92 16 14 C 0.09 1.21 5.34 -4.04 -0.02 1.19 16 15 N -0.71 -8.56 5.44 -61.76 -0.34 -8.90 16 16 C 0.58 7.86 7.74 -13.06 -0.10 7.76 16 17 O -0.50 -8.81 14.17 5.15 0.07 -8.73 16 18 C -0.25 -2.59 6.45 -36.71 -0.24 -2.82 16 19 S 0.29 1.75 22.15 -107.50 -2.38 -0.63 16 20 C -0.22 -1.00 10.90 29.10 0.32 -0.68 16 21 C -0.14 -0.87 9.95 -41.26 -0.41 -1.29 16 22 C 0.17 1.69 6.21 -84.53 -0.52 1.17 16 23 N -0.23 -2.87 3.05 -11.06 -0.03 -2.90 16 24 C -0.05 -0.48 11.45 -16.66 -0.19 -0.67 16 25 C -0.05 -0.48 12.05 -17.73 -0.21 -0.69 16 26 N -0.27 -4.05 12.39 30.24 0.37 -3.67 16 27 N -0.03 -0.44 10.80 60.35 0.65 0.21 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.39 10.40 7.67 -40.82 -0.31 10.09 16 30 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.37 4.81 9.05 45.56 0.41 5.22 16 33 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 4.09 7.47 -40.82 -0.30 3.79 16 36 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 37 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -38.21 358.34 -6.63 -44.84 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.56 Total: 11.75 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.73 Total: 0.21 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 1.05 Total: -61.37 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.39 Total: -17.65 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.38 Total: -0.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.21 -6.63 -44.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699050924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.088 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds