Wall clock time and date at job start Tue Mar 31 2020 19:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48492 * 109.47033 * 269.99528 * 3 2 1 5 5 H 1.48500 * 109.47079 * 29.99701 * 3 2 1 6 6 H 1.48503 * 109.46961 * 149.99723 * 3 2 1 7 7 C 1.38810 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99594 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00030 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47263 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47731 * 59.99577 * 11 10 9 13 13 O 1.42903 * 109.46874 * 299.99904 * 11 10 9 14 14 C 1.52998 * 109.47348 * 180.02562 * 11 10 9 15 15 N 1.46498 * 109.47170 * 184.99605 * 14 11 10 16 16 C 1.34777 * 119.99895 * 179.97438 * 15 14 11 17 17 O 1.21744 * 120.00429 * 0.02562 * 16 15 14 18 18 C 1.46215 * 119.99950 * 179.97438 * 16 15 14 19 19 S 1.75816 * 125.47670 * 354.59865 * 18 16 15 20 20 C 1.70565 * 91.67321 * 179.97438 * 19 18 16 21 21 C 1.33587 * 111.16769 * 359.97438 * 20 19 18 22 22 C 1.37332 * 125.47622 * 174.28834 * 18 16 15 23 23 N 1.39960 * 123.48325 * 0.02562 * 22 18 16 24 24 C 1.36152 * 125.94760 * 131.02114 * 23 22 18 25 25 C 1.35356 * 106.04901 * 179.97438 * 24 23 22 26 26 N 1.33787 * 106.53816 * 0.02562 * 25 24 23 27 27 N 1.28605 * 109.06872 * 359.72837 * 26 25 24 28 28 H 0.97004 * 119.99823 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99769 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47235 * 60.00250 * 10 9 7 31 31 H 1.09002 * 109.47372 * 299.99731 * 10 9 7 32 32 H 0.96702 * 114.00313 * 300.00527 * 13 11 10 33 33 H 1.09000 * 109.46938 * 304.99193 * 14 11 10 34 34 H 1.08994 * 109.47318 * 64.99438 * 14 11 10 35 35 H 0.96999 * 119.99859 * 359.97438 * 15 14 11 36 36 H 1.08002 * 124.41516 * 179.97438 * 20 19 18 37 37 H 1.08006 * 122.46395 * 180.02562 * 21 20 19 38 38 H 1.08000 * 126.97222 * 0.02562 * 24 23 22 39 39 H 1.08003 * 126.73459 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4375 -4.7618 -0.8902 13 8 0.2419 -4.7442 1.1664 14 6 1.8289 -6.1447 0.0005 15 7 0.8816 -7.2556 -0.1204 16 6 1.3317 -8.5258 -0.1419 17 8 2.5255 -8.7500 -0.0604 18 6 0.3862 -9.6345 -0.2620 19 16 -1.3658 -9.4871 -0.2528 20 6 -1.5585 -11.1724 -0.4316 21 6 -0.3753 -11.7894 -0.4931 22 6 0.7238 -10.9579 -0.4061 23 7 2.0451 -11.4166 -0.4562 24 6 2.5613 -12.4476 0.2680 25 6 3.8624 -12.5437 -0.0926 26 7 4.0773 -11.5861 -1.0018 27 7 2.9826 -10.9406 -1.1990 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.6847 -3.7145 0.8905 31 1 2.6848 -3.7145 -0.8895 32 1 0.7337 -4.7897 1.9978 33 1 2.5215 -6.1647 -0.8409 34 1 2.3861 -6.2421 0.9322 35 1 -0.0697 -7.0769 -0.1849 36 1 -2.5128 -11.6750 -0.4879 37 1 -0.2848 -12.8597 -0.6064 38 1 2.0384 -13.0641 0.9842 39 1 4.5855 -13.2537 0.2810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699050947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:41 Heat of formation + Delta-G solvation = 80.417324 kcal Electronic energy + Delta-G solvation = -25613.390858 eV Core-core repulsion = 21686.492236 eV Total energy + Delta-G solvation = -3926.898623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.50745 -40.09406 -38.62073 -37.54872 -34.53077 -34.03932 -33.81839 -31.44821 -31.26108 -30.52361 -28.90885 -26.41007 -25.13671 -23.18023 -22.88236 -22.48879 -21.61079 -21.34900 -20.11943 -19.15559 -17.79097 -17.18930 -16.62239 -16.33708 -16.07938 -16.00722 -15.41047 -15.17763 -15.03558 -14.82763 -14.48949 -14.32161 -13.89923 -13.73663 -13.59483 -13.17001 -12.99711 -12.66785 -12.37247 -11.90333 -11.81697 -11.75548 -11.21815 -10.97350 -10.84169 -10.83106 -10.68573 -10.36758 -10.18149 -9.84216 -9.61196 -9.57151 -9.51272 -9.21468 -9.12312 -8.91900 -6.95784 -5.77723 -3.07470 -0.32271 0.61007 1.03481 1.20614 1.81207 2.17749 2.47870 2.78971 2.85577 3.43214 3.48344 3.49994 4.08286 4.29557 4.33087 4.51065 4.52960 4.67478 4.74742 4.81482 4.92706 5.00153 5.16570 5.18380 5.22340 5.53654 5.54118 5.55946 5.75157 5.89719 5.94399 6.13057 6.24055 6.46384 6.49019 6.63872 7.20535 7.67481 7.86909 7.93583 8.36115 8.40482 9.52315 10.08277 10.44326 11.44595 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.002258 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.690360 B =12396.513169 C =13604.771802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.552 6.552 14 C 0.092 3.908 15 N -0.714 5.714 16 C 0.578 3.422 17 O -0.502 6.502 18 C -0.247 4.247 19 S 0.291 5.709 20 C -0.224 4.224 21 C -0.141 4.141 22 C 0.167 3.833 23 N -0.234 5.234 24 C -0.052 4.052 25 C -0.046 4.046 26 N -0.268 5.268 27 N -0.028 5.028 28 H 0.255 0.745 29 H 0.389 0.611 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.374 0.626 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.401 0.599 36 H 0.184 0.816 37 H 0.157 0.843 38 H 0.190 0.810 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -30.166 1.794 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.357 6.357 14 C -0.032 4.032 15 N -0.366 5.366 16 C 0.362 3.638 17 O -0.378 6.378 18 C -0.371 4.371 19 S 0.558 5.442 20 C -0.363 4.363 21 C -0.173 4.173 22 C 0.059 3.941 23 N -0.023 5.023 24 C -0.200 4.200 25 C -0.201 4.201 26 N -0.136 5.136 27 N -0.007 5.007 28 H 0.065 0.935 29 H 0.224 0.776 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.221 0.779 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.202 0.798 37 H 0.174 0.826 38 H 0.207 0.793 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.594 -27.878 0.495 28.438 hybrid contribution 0.719 -1.205 1.114 1.792 sum -4.874 -29.083 1.609 29.533 Atomic orbital electron populations 1.69681 1.05107 1.25684 1.57371 1.24761 0.95543 0.97738 1.02817 0.86174 0.78640 0.83716 0.77554 1.21657 1.21725 1.20739 1.19218 0.91016 0.84069 1.43157 0.91196 1.42221 1.06111 0.99332 1.89385 1.21183 0.93457 0.86521 0.99020 1.22405 0.93346 0.91646 0.89712 0.87665 1.86568 1.37014 1.96418 1.15731 1.22192 0.92139 0.85403 1.03467 1.45752 1.11111 1.05108 1.74606 1.16681 0.87258 0.81754 0.78084 1.90964 1.14775 1.83890 1.48134 1.24882 0.99781 0.97046 1.15356 1.83442 0.94980 1.02238 1.63506 1.25156 1.03052 1.00165 1.07887 1.19622 0.89575 1.01920 1.06172 1.16634 0.81562 0.91079 1.04796 1.44057 1.07630 1.22492 1.28117 1.23815 0.96495 0.95990 1.03677 1.23605 0.95237 1.01363 0.99885 1.75162 1.16377 1.06046 1.16016 1.78634 0.91101 1.17759 1.13229 0.93476 0.77640 0.95865 0.95238 0.77857 0.89858 0.90702 0.76410 0.79823 0.82591 0.79300 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.25 5.49 -59.91 -0.33 -18.58 16 10 C 0.13 2.44 5.92 -4.05 -0.02 2.42 16 11 C 0.09 1.34 3.09 -26.73 -0.08 1.25 16 12 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 13 O -0.55 -8.46 13.03 -35.23 -0.46 -8.91 16 14 C 0.09 1.22 5.31 -4.04 -0.02 1.20 16 15 N -0.71 -8.56 5.50 -61.77 -0.34 -8.90 16 16 C 0.58 7.86 7.74 -13.06 -0.10 7.76 16 17 O -0.50 -8.80 14.17 5.15 0.07 -8.73 16 18 C -0.25 -2.59 6.46 -36.71 -0.24 -2.82 16 19 S 0.29 1.75 22.15 -107.50 -2.38 -0.64 16 20 C -0.22 -1.00 10.90 29.10 0.32 -0.68 16 21 C -0.14 -0.87 9.96 -41.26 -0.41 -1.29 16 22 C 0.17 1.69 6.21 -84.53 -0.52 1.17 16 23 N -0.23 -2.87 3.05 -11.06 -0.03 -2.91 16 24 C -0.05 -0.48 11.45 -16.66 -0.19 -0.67 16 25 C -0.05 -0.48 12.05 -17.73 -0.21 -0.69 16 26 N -0.27 -4.05 12.39 30.24 0.37 -3.68 16 27 N -0.03 -0.44 10.79 60.35 0.65 0.21 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.39 10.43 7.54 -40.82 -0.31 10.12 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.37 4.80 9.05 45.56 0.41 5.22 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.06 7.59 -40.82 -0.31 3.75 16 36 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 37 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.19 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -38.24 358.33 -6.63 -44.87 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -3.56 Total: 11.72 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.74 Total: 0.21 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 1.05 Total: -61.37 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.39 Total: -17.64 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.38 Total: -0.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.24 -6.63 -44.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699050947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.288 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds