Wall clock time and date at job start Tue Mar 31 2020 19:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86792 * 120.00602 * 2 1 4 4 H 1.48500 * 109.47509 * 270.00365 * 3 2 1 5 5 H 1.48510 * 109.47032 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.47267 * 150.00028 * 3 2 1 7 7 C 1.38954 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99996 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99928 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47254 * 179.97438 * 12 10 9 14 14 C 1.50191 * 112.01117 * 184.47999 * 13 12 10 15 15 C 1.56014 * 105.28051 * 122.00065 * 14 13 12 16 16 H 1.09000 * 116.85295 * 159.59805 * 15 14 13 17 17 C 1.57064 * 99.67734 * 33.20239 * 15 14 13 18 18 C 1.49708 * 110.99666 * 301.52155 * 13 12 10 19 19 H 1.08999 * 116.16221 * 75.28857 * 18 13 12 20 20 C 1.56016 * 104.08463 * 306.12264 * 18 13 12 21 21 N 1.47864 * 105.11278 * 287.95589 * 20 18 13 22 22 C 1.34780 * 126.92755 * 181.67705 * 21 20 18 23 23 O 1.21561 * 120.00076 * 180.02562 * 22 21 20 24 24 C 1.47756 * 119.99906 * 0.02562 * 22 21 20 25 25 C 1.39350 * 124.11727 * 180.02562 * 24 22 21 26 26 N 1.30088 * 112.14456 * 179.97438 * 25 24 22 27 27 S 1.55920 * 108.75677 * 359.97438 * 26 25 24 28 28 N 1.31497 * 124.11295 * 359.70735 * 24 22 21 29 29 H 0.97002 * 119.99601 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99872 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47033 * 60.00258 * 12 10 9 32 32 H 1.08996 * 109.47223 * 300.00162 * 12 10 9 33 33 H 1.08996 * 109.94409 * 3.17585 * 14 13 12 34 34 H 1.08996 * 110.57923 * 241.15739 * 14 13 12 35 35 H 1.08999 * 112.35465 * 191.55340 * 17 15 14 36 36 H 1.08997 * 112.44030 * 64.16375 * 17 15 14 37 37 H 1.09003 * 110.31069 * 169.04767 * 20 18 13 38 38 H 1.08993 * 110.40245 * 46.91212 * 20 18 13 39 39 H 1.07995 * 123.92779 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.5086 -7.3095 -0.1110 15 6 2.1026 -7.9766 -1.3901 16 1 2.0057 -9.0593 -1.4710 17 6 3.5650 -7.4069 -1.3302 18 6 3.1021 -5.9121 -1.1930 19 1 3.8901 -5.1599 -1.1563 20 6 2.1251 -5.8299 -2.4067 21 7 1.5311 -7.1796 -2.5155 22 6 0.6475 -7.6032 -3.4409 23 8 0.2383 -8.7475 -3.4116 24 6 0.1761 -6.6767 -4.4909 25 6 -0.7346 -7.0228 -5.4873 26 7 -0.9863 -6.0290 -6.2882 27 16 -0.1584 -4.7910 -5.8266 28 7 0.5603 -5.4234 -4.5953 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9205 -0.8914 32 1 0.6165 -4.9209 0.8886 33 1 0.4345 -7.1632 -0.2244 34 1 1.7160 -7.9219 0.7665 35 1 4.1181 -7.5867 -2.2520 36 1 4.1111 -7.7539 -0.4530 37 1 2.6721 -5.5827 -3.3166 38 1 1.3484 -5.0885 -2.2197 39 1 -1.1796 -8.0021 -5.5834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714986793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:43 Heat of formation + Delta-G solvation = 52.767377 kcal Electronic energy + Delta-G solvation = -27379.955495 eV Core-core repulsion = 23451.857881 eV Total energy + Delta-G solvation = -3928.097614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56303 -40.69243 -38.53980 -37.76749 -34.36852 -33.96674 -33.30227 -31.41869 -30.89304 -29.68044 -27.70051 -26.58761 -25.10147 -24.25488 -23.18975 -21.14970 -20.60322 -19.59689 -19.40124 -18.90149 -17.90192 -17.38035 -16.62558 -16.46942 -15.94780 -15.77650 -15.36341 -15.02604 -14.58330 -14.42510 -13.91507 -13.82847 -13.36715 -13.12737 -12.68587 -12.46952 -12.37777 -12.07399 -11.83188 -11.62543 -11.60105 -11.45412 -11.42910 -11.37112 -11.27044 -11.03957 -11.03398 -10.86244 -10.42606 -10.27436 -10.26130 -9.53692 -9.44209 -8.78035 -8.41734 -8.04464 -7.95190 -6.46166 -3.87124 0.24664 1.20940 1.32988 1.42045 2.65354 2.92119 3.14172 3.23715 3.29158 3.82224 3.87536 4.10571 4.17597 4.37141 4.47711 4.60174 4.67516 4.92660 4.98554 5.04005 5.19548 5.23006 5.34014 5.43672 5.57789 5.61142 5.73922 5.80854 5.85870 5.89642 6.02384 6.13745 6.19670 6.27324 6.39459 6.90901 7.11946 7.30112 7.50903 7.82783 8.00892 8.55763 9.12978 9.48582 9.99438 10.71422 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.004140 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.791162 B = 6761.640610 C = 8714.808088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.445 3.555 11 O -0.580 6.580 12 C 0.031 3.969 13 N -0.492 5.492 14 C 0.024 3.976 15 C 0.111 3.889 16 H 0.129 0.871 17 C -0.137 4.137 18 C 0.067 3.933 19 H 0.156 0.844 20 C 0.069 3.931 21 N -0.600 5.600 22 C 0.620 3.380 23 O -0.533 6.533 24 C 0.010 3.990 25 C 0.088 3.912 26 N -0.582 5.582 27 S 0.725 5.275 28 N -0.534 5.534 29 H 0.272 0.728 30 H 0.391 0.609 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -13.357 -8.819 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.230 3.770 11 O -0.465 6.465 12 C -0.101 4.101 13 N -0.216 5.216 14 C -0.104 4.104 15 C 0.009 3.991 16 H 0.147 0.853 17 C -0.176 4.176 18 C -0.041 4.041 19 H 0.173 0.827 20 C -0.054 4.054 21 N -0.333 5.333 22 C 0.403 3.597 23 O -0.409 6.409 24 C -0.165 4.165 25 C -0.106 4.106 26 N -0.423 5.423 27 S 0.767 5.233 28 N -0.384 5.384 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.129 -11.806 -9.183 14.957 hybrid contribution -1.097 -0.665 -0.123 1.289 sum -0.968 -12.471 -9.306 15.590 Atomic orbital electron populations 1.69613 1.05973 1.28207 1.50408 1.25260 0.95605 0.99731 0.97235 0.85868 0.79285 0.80822 0.78385 1.20408 1.20937 1.19365 1.19692 0.93348 0.82105 1.47662 0.87828 1.41854 1.09174 1.04598 1.64088 1.19593 0.88317 0.84423 0.84653 1.90455 1.13586 1.86849 1.55582 1.22189 0.94802 0.91516 1.01584 1.65238 1.16574 0.99885 1.39866 1.24060 0.97752 0.91636 0.96975 1.24150 0.93423 0.96905 0.84656 0.85285 1.24008 0.94885 0.95671 1.03012 1.24978 0.95644 0.97529 0.85975 0.82655 1.23487 0.98247 0.82975 1.00717 1.49120 1.41954 1.14464 1.27768 1.16352 0.78727 0.85171 0.79418 1.90812 1.58037 1.17819 1.74270 1.22455 1.01927 0.90550 1.01580 1.23721 0.96600 1.00309 0.89966 1.72244 1.29466 1.07815 1.32745 1.79318 1.18155 1.17896 1.07913 1.72713 1.28511 1.13046 1.24148 0.91843 0.77552 0.92938 0.89234 0.92172 0.88849 0.89991 0.88382 0.90443 0.89310 0.77112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 10 C 0.44 9.96 7.44 -10.99 -0.08 9.88 16 11 O -0.58 -14.48 13.57 5.55 0.08 -14.41 16 12 C 0.03 0.54 4.77 -4.97 -0.02 0.51 16 13 N -0.49 -7.75 5.21 -216.51 -1.13 -8.88 16 14 C 0.02 0.31 6.36 -0.36 0.00 0.30 16 15 C 0.11 1.31 5.23 -62.57 -0.33 0.98 16 16 H 0.13 1.35 8.06 -51.93 -0.42 0.93 16 17 C -0.14 -1.58 6.81 -22.31 -0.15 -1.73 16 18 C 0.07 1.01 4.13 -62.31 -0.26 0.75 16 19 H 0.16 2.74 6.35 -51.93 -0.33 2.42 16 20 C 0.07 1.01 4.53 -1.68 -0.01 1.00 16 21 N -0.60 -8.11 2.95 -157.94 -0.47 -8.58 16 22 C 0.62 8.76 7.90 -12.37 -0.10 8.66 16 23 O -0.53 -8.25 17.15 5.31 0.09 -8.16 16 24 C 0.01 0.12 6.72 -83.71 -0.56 -0.44 16 25 C 0.09 0.99 11.22 -17.88 -0.20 0.79 16 26 N -0.58 -6.65 11.41 19.42 0.22 -6.43 16 27 S 0.73 7.65 23.69 -107.50 -2.55 5.10 16 28 N -0.53 -7.00 8.89 23.18 0.21 -6.80 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 31 H 0.05 0.89 5.65 -51.93 -0.29 0.60 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.09 1.48 4.88 -51.93 -0.25 1.23 16 39 H 0.21 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -31.13 336.65 -8.82 -39.95 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.04 Total: 11.57 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -1.95 Total: 13.06 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -0.50 Total: -67.65 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -2.55 Total: 5.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.13 -8.82 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714986793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.720 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds