Wall clock time and date at job start Tue Mar 31 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86792 * 120.00602 * 2 1 4 4 H 1.48500 * 109.47509 * 270.00365 * 3 2 1 5 5 H 1.48510 * 109.47032 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.47267 * 150.00028 * 3 2 1 7 7 C 1.38954 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99996 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99928 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47254 * 179.97438 * 12 10 9 14 14 C 1.50191 * 112.01117 * 184.47999 * 13 12 10 15 15 C 1.56014 * 105.28051 * 122.00065 * 14 13 12 16 16 H 1.09000 * 116.85295 * 159.59805 * 15 14 13 17 17 C 1.57064 * 99.67734 * 33.20239 * 15 14 13 18 18 C 1.49708 * 110.99666 * 301.52155 * 13 12 10 19 19 H 1.08999 * 116.16221 * 75.28857 * 18 13 12 20 20 C 1.56016 * 104.08463 * 306.12264 * 18 13 12 21 21 N 1.47864 * 105.11278 * 287.95589 * 20 18 13 22 22 C 1.34780 * 126.92755 * 181.67705 * 21 20 18 23 23 O 1.21561 * 120.00076 * 180.02562 * 22 21 20 24 24 C 1.47756 * 119.99906 * 0.02562 * 22 21 20 25 25 C 1.39350 * 124.11727 * 180.02562 * 24 22 21 26 26 N 1.30088 * 112.14456 * 179.97438 * 25 24 22 27 27 S 1.55920 * 108.75677 * 359.97438 * 26 25 24 28 28 N 1.31497 * 124.11295 * 359.70735 * 24 22 21 29 29 H 0.97002 * 119.99601 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99872 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47033 * 60.00258 * 12 10 9 32 32 H 1.08996 * 109.47223 * 300.00162 * 12 10 9 33 33 H 1.08996 * 109.94409 * 3.17585 * 14 13 12 34 34 H 1.08996 * 110.57923 * 241.15739 * 14 13 12 35 35 H 1.08999 * 112.35465 * 191.55340 * 17 15 14 36 36 H 1.08997 * 112.44030 * 64.16375 * 17 15 14 37 37 H 1.09003 * 110.31069 * 169.04767 * 20 18 13 38 38 H 1.08993 * 110.40245 * 46.91212 * 20 18 13 39 39 H 1.07995 * 123.92779 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.5086 -7.3095 -0.1110 15 6 2.1026 -7.9766 -1.3901 16 1 2.0057 -9.0593 -1.4710 17 6 3.5650 -7.4069 -1.3302 18 6 3.1021 -5.9121 -1.1930 19 1 3.8901 -5.1599 -1.1563 20 6 2.1251 -5.8299 -2.4067 21 7 1.5311 -7.1796 -2.5155 22 6 0.6475 -7.6032 -3.4409 23 8 0.2383 -8.7475 -3.4116 24 6 0.1761 -6.6767 -4.4909 25 6 -0.7346 -7.0228 -5.4873 26 7 -0.9863 -6.0290 -6.2882 27 16 -0.1584 -4.7910 -5.8266 28 7 0.5603 -5.4234 -4.5953 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9205 -0.8914 32 1 0.6165 -4.9209 0.8886 33 1 0.4345 -7.1632 -0.2244 34 1 1.7160 -7.9219 0.7665 35 1 4.1181 -7.5867 -2.2520 36 1 4.1111 -7.7539 -0.4530 37 1 2.6721 -5.5827 -3.3166 38 1 1.3484 -5.0885 -2.2197 39 1 -1.1796 -8.0021 -5.5834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714986793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:42 Heat of formation + Delta-G solvation = 28.512501 kcal Electronic energy + Delta-G solvation = -27381.007266 eV Core-core repulsion = 23451.857881 eV Total energy + Delta-G solvation = -3929.149385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.61030 -41.73168 -39.99242 -39.20642 -36.02851 -35.26957 -34.45636 -33.28593 -32.15980 -30.78315 -28.72426 -28.08597 -26.29270 -25.86204 -24.23073 -22.12795 -21.85096 -21.01207 -20.49487 -20.15821 -19.71683 -18.45138 -17.91485 -17.69410 -17.21060 -16.95023 -16.63685 -16.30035 -16.10191 -15.75028 -15.58909 -15.13200 -14.81719 -14.28858 -14.09271 -13.79241 -13.50290 -13.31771 -13.19620 -12.99044 -12.95878 -12.66402 -12.55804 -12.46024 -12.39351 -12.37925 -12.27057 -12.12046 -12.06041 -11.93443 -11.45676 -11.32860 -10.34811 -10.21641 -9.99219 -9.87633 -9.23181 -8.44922 -5.93183 -0.70041 0.30736 0.39465 0.54914 1.38840 1.43433 1.55666 1.62839 1.88066 2.04689 2.28711 2.68208 3.08703 3.22010 3.25642 3.42257 3.46464 3.57383 3.74963 3.95888 4.02344 4.06083 4.30409 4.36877 4.39951 4.42412 4.53329 4.60030 4.75353 4.79856 4.91177 4.98113 5.08856 5.14470 5.34169 5.43157 5.72203 5.81140 6.05684 6.20892 6.60595 6.76183 7.14149 7.56346 8.10928 8.72597 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.004140 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.791162 B = 6761.640610 C = 8714.808088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.327 4.327 8 H 0.083 0.917 9 N -0.573 5.573 10 C 0.447 3.553 11 O -0.607 6.607 12 C 0.045 3.955 13 N -0.505 5.505 14 C 0.028 3.972 15 C 0.116 3.884 16 H 0.152 0.848 17 C -0.119 4.119 18 C 0.056 3.944 19 H 0.125 0.875 20 C 0.084 3.916 21 N -0.600 5.600 22 C 0.620 3.380 23 O -0.547 6.547 24 C -0.006 4.006 25 C 0.093 3.907 26 N -0.592 5.592 27 S 0.770 5.230 28 N -0.563 5.563 29 H 0.276 0.724 30 H 0.393 0.607 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -14.399 -9.173 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.457 4.457 8 H 0.101 0.899 9 N -0.210 5.210 10 C 0.234 3.766 11 O -0.493 6.493 12 C -0.086 4.086 13 N -0.229 5.229 14 C -0.100 4.100 15 C 0.015 3.985 16 H 0.169 0.831 17 C -0.157 4.157 18 C -0.053 4.053 19 H 0.142 0.858 20 C -0.040 4.040 21 N -0.333 5.333 22 C 0.404 3.596 23 O -0.425 6.425 24 C -0.180 4.180 25 C -0.100 4.100 26 N -0.434 5.434 27 S 0.812 5.188 28 N -0.415 5.415 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.097 -12.878 -9.535 16.024 hybrid contribution -1.015 -0.347 -0.052 1.074 sum -1.112 -13.225 -9.587 16.373 Atomic orbital electron populations 1.69681 1.06913 1.29184 1.50574 1.26005 0.96441 1.02347 0.96375 0.84956 0.77935 0.77002 0.78646 1.19579 1.19909 1.19651 1.19658 0.92727 0.83723 1.49561 0.89943 1.41922 1.09167 1.04784 1.65150 1.20440 0.88244 0.85500 0.82404 1.90443 1.15122 1.87587 1.56119 1.22000 0.94580 0.89569 1.02497 1.65251 1.16632 1.00625 1.40432 1.24142 0.97261 0.90050 0.98520 1.24335 0.93024 0.97745 0.83439 0.83092 1.23957 0.95082 0.92412 1.04296 1.24803 0.95202 0.99341 0.85943 0.85756 1.23175 0.97329 0.83195 1.00303 1.49156 1.41865 1.14074 1.28177 1.16490 0.78471 0.85134 0.79530 1.90796 1.58574 1.18396 1.74783 1.22435 1.02915 0.90499 1.02132 1.23938 0.95909 1.00948 0.89159 1.72243 1.29889 1.08244 1.33003 1.79124 1.16653 1.16851 1.06177 1.72583 1.29676 1.13543 1.25669 0.91426 0.77389 0.92255 0.87898 0.92533 0.86417 0.88818 0.86892 0.90860 0.91581 0.75212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.01 29.55 68.60 2.03 44.04 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.33 -18.03 9.68 84.04 0.81 -17.21 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -28.75 5.29 -306.99 -1.62 -30.38 16 10 C 0.45 20.48 7.44 87.66 0.65 21.14 16 11 O -0.61 -31.25 13.57 -3.05 -0.04 -31.29 16 12 C 0.04 1.57 4.77 85.56 0.41 1.98 16 13 N -0.50 -15.46 5.21 -838.89 -4.37 -19.83 16 14 C 0.03 0.64 6.36 86.70 0.55 1.19 16 15 C 0.12 2.44 5.23 46.92 0.25 2.68 16 16 H 0.15 2.61 8.06 -2.39 -0.02 2.59 16 17 C -0.12 -2.49 6.81 33.46 0.23 -2.26 16 18 C 0.06 1.66 4.13 46.85 0.19 1.85 16 19 H 0.12 4.55 6.35 -2.39 -0.02 4.53 16 20 C 0.08 2.45 4.53 87.16 0.39 2.84 16 21 N -0.60 -15.43 2.95 -771.87 -2.27 -17.70 16 22 C 0.62 16.72 7.90 86.76 0.69 17.41 16 23 O -0.55 -16.02 17.15 -3.91 -0.07 -16.09 16 24 C -0.01 -0.16 6.72 41.98 0.28 0.12 16 25 C 0.09 1.97 11.22 85.22 0.96 2.92 16 26 N -0.59 -12.73 11.41 -92.47 -1.05 -13.78 16 27 S 0.77 15.55 23.69 -56.49 -1.34 14.21 16 28 N -0.56 -14.53 8.89 -80.58 -0.72 -15.25 16 29 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.39 19.12 7.90 -92.71 -0.73 18.38 16 31 H 0.06 2.02 5.65 -2.39 -0.01 2.01 16 32 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.17 7.67 -2.39 -0.02 2.15 16 38 H 0.07 2.24 4.88 -2.39 -0.01 2.23 16 39 H 0.23 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -67.11 336.65 -2.90 -70.01 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.40 Total: 32.41 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 5.88 Total: 32.50 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -9.76 Total: -145.78 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.11 Total: -47.38 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 15.55 SS G_CDS: -1.34 Total: 14.21 kcal Total: -67.11 -2.90 -70.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714986793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.520 kcal (2) G-P(sol) polarization free energy of solvation -67.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds