Wall clock time and date at job start Tue Mar 31 2020 19:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86796 * 119.99529 * 2 1 4 4 H 1.48497 * 109.47446 * 269.99876 * 3 2 1 5 5 H 1.48496 * 109.47381 * 30.00152 * 3 2 1 6 6 H 1.48508 * 109.46960 * 149.99979 * 3 2 1 7 7 C 1.38793 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00401 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46908 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21713 * 120.00187 * 359.72121 * 17 16 15 19 19 C 1.46600 * 119.99646 * 179.72447 * 17 16 15 20 20 C 1.41155 * 126.56280 * 359.68165 * 19 17 16 21 21 N 1.30525 * 108.27595 * 179.85521 * 20 19 17 22 22 N 1.39993 * 109.36553 * 0.41371 * 21 20 19 23 23 C 1.38454 * 143.84851 * 179.73484 * 22 21 20 24 24 C 1.33070 * 108.42289 * 180.02562 * 23 22 21 25 25 N 1.38060 * 108.13573 * 0.02562 * 24 23 22 26 26 H 0.97008 * 126.16141 * 180.02562 * 25 24 23 27 27 C 1.35013 * 108.27658 * 359.73736 * 22 21 20 28 28 H 0.96999 * 120.00551 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47277 * 60.00374 * 10 9 7 30 30 H 1.08998 * 109.47382 * 300.00026 * 10 9 7 31 31 H 0.97000 * 119.99549 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47424 * 60.00473 * 14 13 11 33 33 H 1.09006 * 109.46868 * 300.00024 * 14 13 11 34 34 H 1.09009 * 109.46730 * 59.99787 * 15 14 13 35 35 H 1.08998 * 109.46846 * 300.00332 * 15 14 13 36 36 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 37 37 H 1.07998 * 125.86114 * 0.02613 * 20 19 17 38 38 H 1.08000 * 125.79184 * 359.96455 * 23 22 21 39 39 H 1.08001 * 125.93696 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 16 3.7724 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0017 11 6 5.5732 -3.2323 -0.0008 12 8 6.3441 -2.2961 0.0005 13 7 6.0459 -4.4945 -0.0014 14 6 7.4909 -4.7355 0.0001 15 6 7.7567 -6.2423 -0.0016 16 7 9.2017 -6.4833 -0.0008 17 6 9.6743 -7.7454 -0.0077 18 8 8.9007 -8.6850 -0.0095 19 6 11.1204 -7.9866 -0.0129 20 6 12.1363 -7.0065 -0.0179 21 7 13.2913 -7.6144 -0.0185 22 7 13.0871 -8.9993 -0.0235 23 6 13.7321 -10.2244 -0.0307 24 6 12.8108 -11.1847 -0.0323 25 7 11.5666 -10.5864 -0.0267 26 1 10.7113 -11.0443 -0.0260 27 6 11.7571 -9.2312 -0.0202 28 1 -0.4851 0.8400 -0.0004 29 1 3.6442 -3.4305 -0.8924 30 1 3.6434 -3.4325 0.8875 31 1 5.4292 -5.2433 -0.0028 32 1 7.9328 -4.2894 0.8910 33 1 7.9348 -4.2876 -0.8890 34 1 7.3148 -6.6881 -0.8928 35 1 7.3126 -6.6905 0.8872 36 1 9.8183 -5.7344 0.0003 37 1 11.9839 -5.9374 -0.0180 38 1 14.8015 -10.3752 -0.0354 39 1 13.0030 -12.2474 -0.0371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720022209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:20 Heat of formation + Delta-G solvation = 62.282583 kcal Electronic energy + Delta-G solvation = -24280.582981 eV Core-core repulsion = 20352.897977 eV Total energy + Delta-G solvation = -3927.685004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.60500 -39.86242 -39.23271 -38.42114 -35.91450 -33.96414 -33.21323 -32.43471 -30.61127 -30.15451 -29.27689 -27.68914 -25.61001 -23.80196 -23.07658 -22.49321 -21.56403 -21.08004 -20.38229 -18.63906 -17.84611 -16.91346 -16.75166 -16.65253 -16.29459 -16.05903 -15.87527 -15.51253 -15.16373 -15.01854 -14.93502 -14.50134 -14.03123 -13.88650 -13.77174 -13.64086 -13.29438 -13.13828 -12.79457 -12.45063 -12.02712 -11.74233 -11.47189 -11.26507 -11.09479 -11.00474 -10.61798 -10.20767 -9.85878 -9.70934 -9.58966 -9.40362 -9.07461 -8.98936 -8.50537 -8.16212 -6.91930 -6.28495 -4.00531 1.07639 1.31384 1.47344 1.91605 2.26294 2.57716 2.93293 2.95352 3.18428 3.33318 3.43254 3.50897 3.70634 3.84792 4.16401 4.33452 4.34861 4.42889 4.63799 4.66569 4.74533 4.84264 4.97978 5.09889 5.10586 5.16807 5.20272 5.31478 5.63628 5.72352 5.77138 5.93296 6.01197 6.11054 6.29006 6.43604 6.53186 7.14714 7.28087 7.53580 7.94469 8.03006 8.42072 8.43469 9.17600 10.80706 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.044671 B = 0.001528 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.648791 B =18325.242981 C =18926.106742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.110 3.890 15 C 0.113 3.887 16 N -0.725 5.725 17 C 0.607 3.393 18 O -0.566 6.566 19 C -0.338 4.338 20 C 0.128 3.872 21 N -0.298 5.298 22 N -0.307 5.307 23 C 0.004 3.996 24 C 0.029 3.971 25 N -0.572 5.572 26 H 0.445 0.555 27 C 0.322 3.678 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.402 0.598 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.202 0.798 38 H 0.194 0.806 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.783 -25.219 0.011 37.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.014 4.014 15 C -0.011 4.011 16 N -0.377 5.377 17 C 0.397 3.603 18 O -0.446 6.446 19 C -0.358 4.358 20 C -0.056 4.056 21 N -0.118 5.118 22 N -0.076 5.076 23 C -0.122 4.122 24 C -0.099 4.099 25 N -0.184 5.184 26 H 0.287 0.713 27 C 0.085 3.915 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.237 0.763 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.219 0.781 38 H 0.211 0.789 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 29.710 -24.024 0.017 38.208 hybrid contribution -2.000 -0.720 -0.038 2.126 sum 27.711 -24.744 -0.021 37.150 Atomic orbital electron populations 1.69940 1.05919 1.27771 1.48046 1.24711 0.94446 0.98961 0.93164 0.86732 0.81889 0.83279 0.79930 1.19208 1.19943 1.15921 1.22320 0.88248 0.97567 1.58819 0.89352 1.84785 1.09326 0.99983 1.97439 1.23277 0.93765 1.04457 1.05983 1.20284 0.90683 0.82031 0.75109 1.90706 1.58765 1.42143 1.47616 1.45758 1.06834 1.08403 1.77981 1.21346 0.82683 0.94208 1.03210 1.21399 0.81290 0.95151 1.03279 1.45420 1.07513 1.07803 1.76943 1.16800 0.86165 0.82417 0.74959 1.90768 1.58719 1.42568 1.52543 1.18347 0.93647 0.87895 1.35949 1.24041 0.88172 0.99942 0.93475 1.77520 1.21871 0.80588 1.31861 1.47044 1.04959 1.05703 1.49930 1.21640 1.00153 0.77853 1.12576 1.22337 0.81197 0.99818 1.06544 1.41623 1.09766 1.02707 1.64326 0.71268 1.19207 0.86986 0.85856 0.99451 0.91940 0.88345 0.88308 0.76327 0.90832 0.90845 0.90704 0.90687 0.76385 0.78135 0.78906 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 11 C 0.53 9.10 7.85 -10.98 -0.09 9.02 16 12 O -0.52 -10.80 15.86 5.55 0.09 -10.71 16 13 N -0.73 -8.71 5.56 -60.29 -0.33 -9.04 16 14 C 0.11 1.08 5.79 -4.04 -0.02 1.06 16 15 C 0.11 0.96 5.79 -4.04 -0.02 0.94 16 16 N -0.72 -5.86 5.55 -61.64 -0.34 -6.20 16 17 C 0.61 6.38 7.78 -12.89 -0.10 6.28 16 18 O -0.57 -7.63 16.91 5.18 0.09 -7.54 16 19 C -0.34 -3.19 6.15 -104.83 -0.65 -3.84 16 20 C 0.13 1.01 11.48 -17.00 -0.20 0.81 16 21 N -0.30 -2.90 12.61 30.84 0.39 -2.51 16 22 N -0.31 -2.64 4.67 -11.88 -0.06 -2.70 16 23 C 0.00 0.02 11.91 -16.35 -0.19 -0.18 16 24 C 0.03 0.07 11.92 -16.54 -0.20 -0.13 16 25 N -0.57 -3.08 6.24 -11.98 -0.07 -3.15 16 26 H 0.45 1.78 8.96 -40.82 -0.37 1.41 16 27 C 0.32 2.86 8.38 -154.53 -1.29 1.57 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.40 3.68 8.47 -40.82 -0.35 3.34 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 2.22 7.41 -40.82 -0.30 1.91 16 37 H 0.20 0.78 7.49 -52.49 -0.39 0.38 16 38 H 0.19 0.25 8.06 -52.49 -0.42 -0.17 16 39 H 0.21 -0.48 8.06 -52.49 -0.42 -0.91 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -40.83 360.98 -7.43 -48.26 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.37 Total: 1.03 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.32 Total: 1.44 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.36 Total: -49.35 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -40.83 -7.43 -48.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720022209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.538 kcal (2) G-P(sol) polarization free energy of solvation -40.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds