Wall clock time and date at job start Tue Mar 31 2020 19:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86796 * 119.99529 * 2 1 4 4 H 1.48497 * 109.47446 * 269.99876 * 3 2 1 5 5 H 1.48496 * 109.47381 * 30.00152 * 3 2 1 6 6 H 1.48508 * 109.46960 * 149.99979 * 3 2 1 7 7 C 1.38793 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00401 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46908 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21713 * 120.00187 * 359.72121 * 17 16 15 19 19 C 1.46600 * 119.99646 * 179.72447 * 17 16 15 20 20 C 1.41155 * 126.56280 * 359.68165 * 19 17 16 21 21 N 1.30525 * 108.27595 * 179.85521 * 20 19 17 22 22 N 1.39993 * 109.36553 * 0.41371 * 21 20 19 23 23 C 1.38454 * 143.84851 * 179.73484 * 22 21 20 24 24 C 1.33070 * 108.42289 * 180.02562 * 23 22 21 25 25 N 1.38060 * 108.13573 * 0.02562 * 24 23 22 26 26 H 0.97008 * 126.16141 * 180.02562 * 25 24 23 27 27 C 1.35013 * 108.27658 * 359.73736 * 22 21 20 28 28 H 0.96999 * 120.00551 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47277 * 60.00374 * 10 9 7 30 30 H 1.08998 * 109.47382 * 300.00026 * 10 9 7 31 31 H 0.97000 * 119.99549 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47424 * 60.00473 * 14 13 11 33 33 H 1.09006 * 109.46868 * 300.00024 * 14 13 11 34 34 H 1.09009 * 109.46730 * 59.99787 * 15 14 13 35 35 H 1.08998 * 109.46846 * 300.00332 * 15 14 13 36 36 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 37 37 H 1.07998 * 125.86114 * 0.02613 * 20 19 17 38 38 H 1.08000 * 125.79184 * 359.96455 * 23 22 21 39 39 H 1.08001 * 125.93696 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 16 3.7724 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0017 11 6 5.5732 -3.2323 -0.0008 12 8 6.3441 -2.2961 0.0005 13 7 6.0459 -4.4945 -0.0014 14 6 7.4909 -4.7355 0.0001 15 6 7.7567 -6.2423 -0.0016 16 7 9.2017 -6.4833 -0.0008 17 6 9.6743 -7.7454 -0.0077 18 8 8.9007 -8.6850 -0.0095 19 6 11.1204 -7.9866 -0.0129 20 6 12.1363 -7.0065 -0.0179 21 7 13.2913 -7.6144 -0.0185 22 7 13.0871 -8.9993 -0.0235 23 6 13.7321 -10.2244 -0.0307 24 6 12.8108 -11.1847 -0.0323 25 7 11.5666 -10.5864 -0.0267 26 1 10.7113 -11.0443 -0.0260 27 6 11.7571 -9.2312 -0.0202 28 1 -0.4851 0.8400 -0.0004 29 1 3.6442 -3.4305 -0.8924 30 1 3.6434 -3.4325 0.8875 31 1 5.4292 -5.2433 -0.0028 32 1 7.9328 -4.2894 0.8910 33 1 7.9348 -4.2876 -0.8890 34 1 7.3148 -6.6881 -0.8928 35 1 7.3126 -6.6905 0.8872 36 1 9.8183 -5.7344 0.0003 37 1 11.9839 -5.9374 -0.0180 38 1 14.8015 -10.3752 -0.0354 39 1 13.0030 -12.2474 -0.0371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720022209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:20 Heat of formation + Delta-G solvation = 29.264373 kcal Electronic energy + Delta-G solvation = -24282.014758 eV Core-core repulsion = 20352.897977 eV Total energy + Delta-G solvation = -3929.116781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.07121 -40.79775 -40.33443 -38.95696 -36.88169 -34.97132 -34.65383 -33.70003 -31.75861 -30.69119 -30.07468 -28.58455 -27.81375 -24.54916 -23.55589 -23.10810 -22.05914 -22.01032 -21.36812 -19.92443 -19.17700 -17.94999 -17.52341 -17.29977 -17.15273 -16.97628 -16.93437 -16.79368 -16.35446 -16.12028 -15.66741 -15.57436 -14.99414 -14.93345 -14.84493 -14.63336 -14.36377 -14.14391 -13.74671 -13.60459 -13.32840 -13.01588 -12.85206 -12.79972 -12.60738 -12.10417 -11.85281 -11.59639 -11.15571 -11.12560 -10.92964 -10.52078 -10.24230 -10.18623 -10.07929 -8.97625 -8.66668 -8.50037 -6.20803 0.65215 0.76814 0.98751 1.04307 1.33179 1.44914 1.47449 1.55349 1.56745 1.92990 1.96574 2.26477 2.47114 2.58503 2.78029 2.88355 3.35088 3.64545 3.78859 3.93292 4.05224 4.06825 4.15080 4.26850 4.39278 4.44885 4.50771 4.52061 4.72376 4.86063 4.87580 4.93000 5.30252 5.41769 5.47977 5.72055 5.82551 6.13033 6.21203 6.42601 6.55596 6.70083 6.95174 7.17267 7.30524 8.62328 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.044671 B = 0.001528 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.648791 B =18325.242981 C =18926.106742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.113 4.113 11 C 0.539 3.461 12 O -0.559 6.559 13 N -0.711 5.711 14 C 0.116 3.884 15 C 0.124 3.876 16 N -0.715 5.715 17 C 0.605 3.395 18 O -0.603 6.603 19 C -0.363 4.363 20 C 0.133 3.867 21 N -0.333 5.333 22 N -0.315 5.315 23 C -0.028 4.028 24 C 0.056 3.944 25 N -0.567 5.567 26 H 0.450 0.550 27 C 0.293 3.707 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.418 0.582 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.232 0.768 38 H 0.219 0.781 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.726 -26.685 0.017 39.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.264 4.264 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.366 5.366 14 C -0.009 4.009 15 C -0.001 4.001 16 N -0.367 5.367 17 C 0.396 3.604 18 O -0.486 6.486 19 C -0.383 4.383 20 C -0.050 4.050 21 N -0.154 5.154 22 N -0.085 5.085 23 C -0.152 4.152 24 C -0.071 4.071 25 N -0.180 5.180 26 H 0.293 0.707 27 C 0.055 3.945 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.256 0.744 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.248 0.752 38 H 0.236 0.764 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 31.669 -25.532 0.024 40.679 hybrid contribution -2.532 -0.544 -0.045 2.590 sum 29.138 -26.076 -0.021 39.102 Atomic orbital electron populations 1.70021 1.07349 1.29009 1.49191 1.25570 0.95258 1.02285 0.92867 0.85858 0.80705 0.79541 0.80214 1.18696 1.18433 1.15941 1.22482 0.90365 0.96696 1.58234 0.91975 1.84684 1.06301 1.06202 1.97595 1.23277 0.95848 0.99610 1.07645 1.19878 0.89397 0.83109 0.75203 1.90698 1.59214 1.43712 1.50083 1.45500 1.08311 1.07119 1.75622 1.21404 0.80945 0.95013 1.03503 1.21241 0.81605 0.93959 1.03276 1.45294 1.07571 1.07715 1.76136 1.16986 0.86476 0.82466 0.74444 1.90733 1.59578 1.43707 1.54581 1.18414 0.93262 0.88949 1.37700 1.24520 0.87236 1.01154 0.92126 1.77393 1.23028 0.81727 1.33261 1.47308 1.05330 1.06087 1.49733 1.22442 1.02027 0.76822 1.13928 1.23264 0.79239 1.01544 1.03011 1.41862 1.11165 1.01752 1.63213 0.70652 1.19527 0.87407 0.87162 1.00450 0.91401 0.86712 0.86686 0.74433 0.90564 0.90572 0.90745 0.90726 0.74850 0.75221 0.76407 0.72659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 13.97 21.65 0.30 -55.55 16 2 C 0.05 2.67 5.50 84.85 0.47 3.13 16 3 Si 0.91 44.80 27.74 68.60 1.90 46.70 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 7 C -0.53 -30.72 10.04 67.95 0.68 -30.04 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 10 C -0.11 -4.10 6.16 71.24 0.44 -3.67 16 11 C 0.54 17.46 7.85 87.66 0.69 18.14 16 12 O -0.56 -22.65 15.86 -3.04 -0.05 -22.70 16 13 N -0.71 -15.19 5.56 -463.05 -2.57 -17.76 16 14 C 0.12 2.02 5.79 86.38 0.50 2.52 16 15 C 0.12 1.89 5.79 86.38 0.50 2.39 16 16 N -0.72 -10.67 5.55 -467.13 -2.59 -13.26 16 17 C 0.61 12.46 7.78 86.42 0.67 13.14 16 18 O -0.60 -16.19 16.91 -4.39 -0.07 -16.26 16 19 C -0.36 -6.79 6.15 -20.00 -0.12 -6.91 16 20 C 0.13 2.04 11.48 85.60 0.98 3.02 16 21 N -0.33 -6.43 12.61 -56.33 -0.71 -7.14 16 22 N -0.31 -5.23 4.67 -191.51 -0.89 -6.13 16 23 C -0.03 -0.20 11.91 82.49 0.98 0.78 16 24 C 0.06 0.11 11.92 82.55 0.98 1.10 16 25 N -0.57 -5.32 6.24 -191.83 -1.20 -6.52 16 26 H 0.45 3.07 8.96 -92.70 -0.83 2.24 16 27 C 0.29 5.09 8.38 133.14 1.12 6.20 16 28 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 30 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 31 H 0.42 6.50 8.47 -92.71 -0.79 5.71 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 3.93 7.41 -92.71 -0.69 3.24 16 37 H 0.23 1.52 7.49 -2.91 -0.02 1.49 16 38 H 0.22 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.26 -2.40 8.06 -2.91 -0.02 -2.42 16 Total: -1.00 -90.58 360.98 -0.24 -90.82 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -1.20 Total: 7.73 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 7.89 Total: 9.81 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -7.66 Total: -106.37 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.12 Total: -38.96 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -90.58 -0.24 -90.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720022209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.082 kcal (2) G-P(sol) polarization free energy of solvation -90.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds