Wall clock time and date at job start Tue Mar 31 2020 19:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48506 * 109.46844 * 269.99913 * 3 2 1 5 5 H 1.48500 * 109.47272 * 29.99758 * 3 2 1 6 6 H 1.48493 * 109.47114 * 149.99717 * 3 2 1 7 7 C 1.38797 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00381 * 359.73136 * 7 2 1 9 9 S 1.76202 * 119.99428 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99822 * 179.72699 * 9 7 2 11 11 C 1.50703 * 109.47286 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99894 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00174 * 179.97438 * 11 10 9 14 14 C 1.47068 * 136.05494 * 359.64039 * 13 11 10 15 15 C 1.53755 * 87.88669 * 152.96074 * 14 13 11 16 16 N 1.46498 * 114.26801 * 139.79025 * 15 14 13 17 17 C 1.34776 * 119.99733 * 111.46916 * 16 15 14 18 18 O 1.21563 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.47736 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.33018 * 120.15999 * 5.86169 * 19 17 16 21 21 C 1.31729 * 120.00635 * 180.02562 * 20 19 17 22 22 C 1.38805 * 120.34456 * 359.97438 * 21 20 19 23 23 N 1.32028 * 120.32542 * 0.02562 * 22 21 20 24 24 C 1.32836 * 119.98125 * 359.70672 * 23 22 21 25 25 N 1.38269 * 120.16464 * 180.29413 * 24 23 22 26 26 C 1.47058 * 136.05857 * 179.97438 * 13 11 10 27 27 H 0.97002 * 120.00416 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47465 * 300.00460 * 10 9 7 29 29 H 1.09007 * 109.47359 * 59.99778 * 10 9 7 30 30 H 1.09006 * 113.46470 * 267.68944 * 14 13 11 31 31 H 1.08996 * 113.47131 * 38.13025 * 14 13 11 32 32 H 1.09003 * 114.39066 * 272.67298 * 15 14 13 33 33 H 0.96996 * 120.00218 * 291.47161 * 16 15 14 34 34 H 1.08000 * 119.82770 * 179.97438 * 21 20 19 35 35 H 1.07992 * 119.83674 * 179.97438 * 22 21 20 36 36 H 0.97001 * 119.99989 * 203.10108 * 25 24 23 37 37 H 0.97001 * 120.00138 * 23.10477 * 25 24 23 38 38 H 1.08999 * 113.47121 * 321.87423 * 26 13 11 39 39 H 1.09008 * 113.46474 * 92.30853 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0053 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9844 0.0102 11 6 5.5731 -3.2324 0.0114 12 8 6.3441 -2.2962 0.0071 13 7 6.0458 -4.4946 0.0183 14 6 5.4614 -5.8441 0.0322 15 6 6.7356 -6.3413 -0.6701 16 7 7.2245 -7.6346 -0.1858 17 6 7.1655 -8.7191 -0.9838 18 8 6.7071 -8.6240 -2.1057 19 6 7.6591 -10.0231 -0.4955 20 7 8.0538 -10.1579 0.7675 21 6 8.4938 -11.3220 1.1996 22 6 8.5481 -12.4129 0.3430 23 7 8.1597 -12.2941 -0.9132 24 6 7.7087 -11.1277 -1.3611 25 7 7.2952 -11.0006 -2.6744 26 6 7.3728 -5.1283 0.0212 27 1 -0.4851 0.8400 -0.0004 28 1 3.6433 -3.4271 0.9022 29 1 3.6440 -3.4360 -0.8777 30 1 5.3319 -6.2507 1.0353 31 1 4.5635 -5.9346 -0.5790 32 1 6.7066 -6.2715 -1.7575 33 1 7.5905 -7.7104 0.7093 34 1 8.8140 -11.4281 2.2255 35 1 8.9106 -13.3633 0.7058 36 1 7.2872 -10.1280 -3.0981 37 1 7.0131 -11.7839 -3.1720 38 1 8.1032 -4.6092 -0.5995 39 1 7.7477 -5.3460 1.0213 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721334658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:40 Heat of formation + Delta-G solvation = 33.740458 kcal Electronic energy + Delta-G solvation = -24979.634729 eV Core-core repulsion = 21050.712046 eV Total energy + Delta-G solvation = -3928.922683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78770 -40.71740 -39.32994 -37.70152 -36.07967 -34.30690 -34.00685 -32.44870 -30.74449 -30.12102 -27.93275 -26.21798 -25.99096 -25.58153 -24.14571 -22.53533 -21.31676 -19.37053 -18.89526 -18.24150 -18.04437 -17.75458 -17.12420 -16.78019 -16.36060 -15.92543 -15.55186 -15.38655 -15.11795 -14.95108 -14.63878 -14.49216 -14.06530 -13.88262 -13.46305 -13.08081 -12.93796 -12.79529 -12.69678 -12.24554 -12.15877 -11.96416 -11.44637 -11.27149 -11.11458 -11.01513 -10.77410 -10.63482 -9.88240 -9.76835 -9.62503 -9.51030 -9.01374 -8.80254 -8.62497 -8.52616 -6.94135 -6.29661 -4.02065 -0.00903 0.71064 2.20709 2.26349 2.64918 2.86798 2.96220 3.16070 3.29618 3.32748 3.49769 3.54088 3.59620 3.82062 3.97769 4.07751 4.31528 4.38884 4.56899 4.62184 4.67433 4.74445 4.80583 4.99363 5.09275 5.14618 5.28570 5.41287 5.50669 5.68006 5.73768 5.77284 5.99642 5.99881 6.45148 6.75572 6.86358 7.04745 7.46684 7.65441 7.68016 7.93309 8.33427 8.41014 9.16191 10.79485 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.001868 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.380882 B =14986.223953 C =15273.058516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.116 4.116 11 C 0.566 3.434 12 O -0.513 6.513 13 N -0.648 5.648 14 C 0.087 3.913 15 C 0.108 3.892 16 N -0.694 5.694 17 C 0.591 3.409 18 O -0.536 6.536 19 C -0.049 4.049 20 N -0.375 5.375 21 C -0.017 4.017 22 C 0.137 3.863 23 N -0.505 5.505 24 C 0.411 3.589 25 N -0.819 5.819 26 C 0.099 3.901 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.415 0.585 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.426 0.574 37 H 0.404 0.596 38 H 0.087 0.913 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.949 -27.897 1.031 33.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.266 4.266 11 C 0.356 3.644 12 O -0.386 6.386 13 N -0.387 5.387 14 C -0.038 4.038 15 C 0.002 3.998 16 N -0.345 5.345 17 C 0.378 3.622 18 O -0.413 6.413 19 C -0.197 4.197 20 N -0.091 5.091 21 C -0.183 4.183 22 C -0.029 4.029 23 N -0.228 5.228 24 C 0.168 3.832 25 N -0.368 5.368 26 C -0.025 4.025 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.154 0.846 33 H 0.251 0.749 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.267 0.733 37 H 0.234 0.766 38 H 0.105 0.895 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.452 -25.923 0.124 32.410 hybrid contribution -0.760 -0.581 0.320 1.008 sum 18.692 -26.504 0.444 32.435 Atomic orbital electron populations 1.69939 1.05893 1.27787 1.47974 1.24713 0.94465 0.98972 0.93161 0.86732 0.81882 0.83259 0.79966 1.19169 1.19900 1.15926 1.22298 0.88111 0.97582 1.58888 0.89338 1.84788 1.09488 0.99749 1.97444 1.23220 0.93137 1.04334 1.05918 1.19879 0.90475 0.79446 0.74638 1.90723 1.58945 1.40546 1.48394 1.49270 1.09283 1.04387 1.75786 1.23546 0.98375 0.80581 1.01306 1.23009 0.94788 0.80961 1.01088 1.45539 1.62751 1.07528 1.18689 1.17504 0.77477 0.82719 0.84545 1.90599 1.46722 1.84496 1.19480 1.21293 1.11285 0.95675 0.91412 1.68063 1.03087 1.25594 1.12389 1.23458 1.03723 0.88789 1.02352 1.23891 0.90633 1.00220 0.88137 1.68270 1.14357 1.23767 1.16444 1.19073 0.87568 0.89260 0.87285 1.42807 1.69496 1.15287 1.09204 1.23206 0.88335 0.90134 1.00868 0.91915 0.88438 0.88392 0.89283 0.89341 0.84611 0.74850 0.80778 0.80684 0.73274 0.76584 0.89467 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.85 27.74 -169.99 -4.72 17.14 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.30 5.98 36.01 0.22 -2.08 16 11 C 0.57 10.45 8.10 -10.98 -0.09 10.36 16 12 O -0.51 -11.37 16.64 5.56 0.09 -11.28 16 13 N -0.65 -8.68 3.69 -185.10 -0.68 -9.36 16 14 C 0.09 0.85 8.25 -8.38 -0.07 0.78 16 15 C 0.11 0.93 4.62 -67.69 -0.31 0.61 16 16 N -0.69 -5.21 5.38 -54.48 -0.29 -5.51 16 17 C 0.59 5.46 7.78 -12.38 -0.10 5.36 16 18 O -0.54 -5.90 13.39 5.31 0.07 -5.83 16 19 C -0.05 -0.42 6.77 -82.65 -0.56 -0.98 16 20 N -0.37 -2.72 9.72 -9.49 -0.09 -2.81 16 21 C -0.02 -0.08 11.21 -17.39 -0.19 -0.28 16 22 C 0.14 0.64 11.22 -17.26 -0.19 0.45 16 23 N -0.51 -3.84 10.52 -12.00 -0.13 -3.96 16 24 C 0.41 3.47 7.77 -154.87 -1.20 2.26 16 25 N -0.82 -5.88 8.57 31.32 0.27 -5.62 16 26 C 0.10 0.96 8.38 -8.53 -0.07 0.89 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.10 1.82 8.14 -51.92 -0.42 1.39 16 29 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.30 7.45 -51.93 -0.39 0.92 16 33 H 0.41 2.51 8.12 -40.82 -0.33 2.18 16 34 H 0.18 0.26 8.06 -52.49 -0.42 -0.17 16 35 H 0.18 0.16 8.06 -52.49 -0.42 -0.27 16 36 H 0.43 3.32 6.01 -40.82 -0.25 3.08 16 37 H 0.40 2.16 8.95 -40.82 -0.37 1.79 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -36.93 356.55 -7.97 -44.90 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.29 Total: 3.09 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.36 Total: 5.30 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.15 Total: -53.08 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.16 Total: -17.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.93 -7.97 -44.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721334658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.638 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds