Wall clock time and date at job start Tue Mar 31 2020 19:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46903 * 300.00189 * 3 2 1 6 6 H 1.48496 * 109.47060 * 60.00397 * 3 2 1 7 7 C 1.38816 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99729 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99789 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46891 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00054 * 269.99664 * 12 11 10 14 14 C 1.52997 * 109.47227 * 263.17237 * 13 12 11 15 15 O 1.42893 * 109.47378 * 64.99980 * 14 13 12 16 16 C 1.34770 * 119.99875 * 90.00394 * 12 11 10 17 17 O 1.21686 * 120.00327 * 4.72838 * 16 12 11 18 18 C 1.46723 * 120.00170 * 184.72752 * 16 12 11 19 19 O 1.35345 * 126.64152 * 351.94375 * 18 16 12 20 20 C 1.33659 * 107.68987 * 179.97438 * 19 18 16 21 21 N 1.30625 * 109.14922 * 0.02562 * 20 19 18 22 22 C 1.33685 * 108.99589 * 359.97438 * 21 20 19 23 23 C 1.50706 * 126.27539 * 179.97438 * 22 21 20 24 24 F 1.39897 * 109.47098 * 270.02603 * 23 22 21 25 25 F 1.39906 * 109.46928 * 30.02474 * 23 22 21 26 26 F 1.39892 * 109.47104 * 150.02576 * 23 22 21 27 27 H 0.96994 * 120.00402 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00089 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47314 * 60.00383 * 10 9 7 30 30 H 1.08995 * 109.47062 * 299.99723 * 10 9 7 31 31 H 1.08999 * 109.46524 * 59.99760 * 11 10 9 32 32 H 1.09004 * 109.47075 * 299.99972 * 11 10 9 33 33 H 1.09004 * 109.46789 * 23.16760 * 13 12 11 34 34 H 1.09000 * 109.46828 * 143.16616 * 13 12 11 35 35 H 1.09003 * 109.46587 * 184.99934 * 14 13 12 36 36 H 1.08997 * 109.46815 * 304.99310 * 14 13 12 37 37 H 0.96701 * 113.99762 * 179.97438 * 15 14 13 38 38 H 1.08002 * 125.43123 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8198 0.0001 12 7 1.7964 -6.0885 0.0007 13 6 2.1626 -6.7235 -1.2677 14 6 1.1241 -7.7894 -1.6230 15 8 -0.1376 -7.1634 -1.8640 16 6 2.1334 -6.6714 1.1682 17 8 1.7555 -6.1902 2.2200 18 6 2.9559 -7.8864 1.1710 19 8 3.3204 -8.6176 0.0920 20 6 4.0648 -9.6392 0.5263 21 7 4.1734 -9.5681 1.8261 22 6 3.5012 -8.4975 2.2610 23 6 3.3696 -8.0487 3.6936 24 9 2.2421 -8.6458 4.2675 25 9 4.5118 -8.4268 4.4076 26 9 3.2326 -6.6572 3.7356 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7145 0.8895 30 1 2.6847 -3.7145 -0.8905 31 1 0.4369 -4.7621 -0.8896 32 1 0.4375 -4.7619 0.8904 33 1 2.1944 -5.9705 -2.0552 34 1 3.1432 -7.1896 -1.1709 35 1 1.4424 -8.3223 -2.5190 36 1 1.0285 -8.4932 -0.7963 37 1 -0.8450 -7.7807 -2.0956 38 1 4.5057 -10.4025 -0.0979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733621205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:34 Heat of formation + Delta-G solvation = -172.012101 kcal Electronic energy + Delta-G solvation = -30381.450173 eV Core-core repulsion = 25426.703026 eV Total energy + Delta-G solvation = -4954.747146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.17298 -47.73205 -47.60187 -44.23604 -40.03262 -37.50194 -36.09673 -35.59991 -34.37078 -32.02773 -31.25782 -29.66028 -28.08699 -26.69788 -24.64755 -23.66470 -23.32716 -22.50132 -21.59147 -20.28364 -18.87893 -18.66724 -18.32768 -17.98041 -17.59251 -17.33716 -17.24778 -16.47155 -16.21163 -15.47221 -15.03854 -14.81536 -14.56096 -14.52637 -14.33268 -14.13769 -14.01291 -13.78642 -13.73231 -13.64698 -13.40109 -13.26710 -12.90064 -12.76140 -12.51241 -12.28391 -11.72612 -11.46661 -11.33018 -10.97444 -10.89896 -10.68478 -10.50474 -10.25173 -10.05807 -9.89435 -9.73883 -8.86961 -8.76788 -6.92647 -5.74663 -3.04245 0.06204 1.62039 1.65240 2.27919 2.61747 2.72650 3.24321 3.45612 3.51103 3.53479 3.56714 3.81816 3.93863 4.22763 4.33958 4.50827 4.62403 4.71671 4.78419 4.84044 5.00149 5.13789 5.25445 5.50826 5.54110 5.65626 5.79324 5.96992 6.09278 6.38359 6.61551 6.71912 6.82592 7.13149 7.37985 7.71305 7.75198 8.43337 9.54693 10.09939 10.45204 11.48203 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.003429 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.484329 B = 8162.646566 C = 9518.666950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.142 3.858 11 C 0.111 3.889 12 N -0.577 5.577 13 C 0.099 3.901 14 C 0.063 3.937 15 O -0.562 6.562 16 C 0.584 3.416 17 O -0.479 6.479 18 C -0.014 4.014 19 O -0.174 6.174 20 C 0.203 3.797 21 N -0.456 5.456 22 C -0.035 4.035 23 C 0.552 3.448 24 F -0.166 7.166 25 F -0.167 7.167 26 F -0.139 7.139 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.379 0.621 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -26.075 -3.216 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.013 3.987 11 C -0.010 4.010 12 N -0.309 5.309 13 C -0.024 4.024 14 C -0.016 4.016 15 O -0.368 6.368 16 C 0.367 3.633 17 O -0.353 6.353 18 C -0.073 4.073 19 O -0.060 6.060 20 C -0.023 4.023 21 N -0.183 5.183 22 C -0.160 4.160 23 C 0.497 3.503 24 F -0.147 7.147 25 F -0.148 7.148 26 F -0.120 7.120 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.226 0.774 38 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.838 -25.536 -2.166 26.525 hybrid contribution -0.289 0.560 -0.534 0.826 sum 6.548 -24.977 -2.700 25.962 Atomic orbital electron populations 1.69668 1.05103 1.25600 1.57662 1.24745 0.95544 0.97691 1.02879 0.86099 0.78767 0.84020 0.77195 1.20564 1.21843 1.21777 1.19240 0.91031 0.83906 1.42809 0.91139 1.42182 1.05907 0.99636 1.89633 1.20929 0.93816 0.85775 0.98180 1.21908 0.94569 0.79925 1.04591 1.47700 1.55195 1.23491 1.04500 1.21989 0.96987 0.96838 0.86576 1.22624 0.85143 0.94631 0.99187 1.86581 1.19592 1.37996 1.92586 1.16519 0.80550 0.80811 0.85377 1.91055 1.52326 1.61759 1.30188 1.23404 1.02821 0.96636 0.84421 1.84829 1.53147 1.32914 1.35102 1.28541 0.92600 0.90722 0.90416 1.70180 1.19699 1.17596 1.10792 1.21706 1.02941 0.96358 0.94977 1.16715 0.74388 0.76394 0.82811 1.93241 1.52061 1.83724 1.85716 1.93231 1.50523 1.91275 1.79821 1.93414 1.95251 1.26981 1.96346 0.93506 0.78131 0.95954 0.96357 0.88910 0.89202 0.87897 0.88377 0.92326 0.93980 0.77425 0.71706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.03 5.60 -59.90 -0.34 -19.37 16 10 C 0.14 2.97 6.58 -4.04 -0.03 2.94 16 11 C 0.11 1.91 5.53 -4.04 -0.02 1.89 16 12 N -0.58 -8.06 2.44 -175.21 -0.43 -8.48 16 13 C 0.10 0.98 5.38 -4.04 -0.02 0.96 16 14 C 0.06 0.50 6.81 37.16 0.25 0.76 16 15 O -0.56 -5.55 13.33 -35.23 -0.47 -6.02 16 16 C 0.58 8.77 7.44 -12.84 -0.10 8.68 16 17 O -0.48 -8.89 12.95 5.20 0.07 -8.82 16 18 C -0.01 -0.17 6.53 -36.84 -0.24 -0.41 16 19 O -0.17 -1.34 6.44 4.43 0.03 -1.31 16 20 C 0.20 1.16 13.21 52.25 0.69 1.85 16 21 N -0.46 -4.66 11.21 -10.88 -0.12 -4.78 16 22 C -0.04 -0.44 6.49 -82.47 -0.54 -0.98 16 23 C 0.55 7.84 3.28 36.01 0.12 7.95 16 24 F -0.17 -2.38 17.30 2.25 0.04 -2.34 16 25 F -0.17 -2.28 17.27 2.25 0.04 -2.24 16 26 F -0.14 -2.29 13.69 2.25 0.03 -2.26 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.39 10.46 7.67 -40.82 -0.31 10.15 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.55 7.80 -51.93 -0.40 1.15 16 32 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 33 H 0.10 1.05 8.02 -51.93 -0.42 0.63 16 34 H 0.10 0.78 5.44 -51.93 -0.28 0.49 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.04 0.34 7.23 -51.93 -0.38 -0.04 16 37 H 0.38 2.06 9.12 45.56 0.42 2.48 16 38 H 0.27 -0.14 8.06 -52.49 -0.42 -0.56 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -36.91 342.16 -3.42 -40.33 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.00 Total: 4.09 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -0.13 Total: 16.16 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.16 Total: -60.50 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.37 Total: -16.15 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.91 -3.42 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733621205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.687 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds