Wall clock time and date at job start Tue Mar 31 2020 19:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46903 * 300.00189 * 3 2 1 6 6 H 1.48496 * 109.47060 * 60.00397 * 3 2 1 7 7 C 1.38816 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99729 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99789 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46891 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00054 * 269.99664 * 12 11 10 14 14 C 1.52997 * 109.47227 * 263.17237 * 13 12 11 15 15 O 1.42893 * 109.47378 * 64.99980 * 14 13 12 16 16 C 1.34770 * 119.99875 * 90.00394 * 12 11 10 17 17 O 1.21686 * 120.00327 * 4.72838 * 16 12 11 18 18 C 1.46723 * 120.00170 * 184.72752 * 16 12 11 19 19 O 1.35345 * 126.64152 * 351.94375 * 18 16 12 20 20 C 1.33659 * 107.68987 * 179.97438 * 19 18 16 21 21 N 1.30625 * 109.14922 * 0.02562 * 20 19 18 22 22 C 1.33685 * 108.99589 * 359.97438 * 21 20 19 23 23 C 1.50706 * 126.27539 * 179.97438 * 22 21 20 24 24 F 1.39897 * 109.47098 * 270.02603 * 23 22 21 25 25 F 1.39906 * 109.46928 * 30.02474 * 23 22 21 26 26 F 1.39892 * 109.47104 * 150.02576 * 23 22 21 27 27 H 0.96994 * 120.00402 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00089 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47314 * 60.00383 * 10 9 7 30 30 H 1.08995 * 109.47062 * 299.99723 * 10 9 7 31 31 H 1.08999 * 109.46524 * 59.99760 * 11 10 9 32 32 H 1.09004 * 109.47075 * 299.99972 * 11 10 9 33 33 H 1.09004 * 109.46789 * 23.16760 * 13 12 11 34 34 H 1.09000 * 109.46828 * 143.16616 * 13 12 11 35 35 H 1.09003 * 109.46587 * 184.99934 * 14 13 12 36 36 H 1.08997 * 109.46815 * 304.99310 * 14 13 12 37 37 H 0.96701 * 113.99762 * 179.97438 * 15 14 13 38 38 H 1.08002 * 125.43123 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8198 0.0001 12 7 1.7964 -6.0885 0.0007 13 6 2.1626 -6.7235 -1.2677 14 6 1.1241 -7.7894 -1.6230 15 8 -0.1376 -7.1634 -1.8640 16 6 2.1334 -6.6714 1.1682 17 8 1.7555 -6.1902 2.2200 18 6 2.9559 -7.8864 1.1710 19 8 3.3204 -8.6176 0.0920 20 6 4.0648 -9.6392 0.5263 21 7 4.1734 -9.5681 1.8261 22 6 3.5012 -8.4975 2.2610 23 6 3.3696 -8.0487 3.6936 24 9 2.2421 -8.6458 4.2675 25 9 4.5118 -8.4268 4.4076 26 9 3.2326 -6.6572 3.7356 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7145 0.8895 30 1 2.6847 -3.7145 -0.8905 31 1 0.4369 -4.7621 -0.8896 32 1 0.4375 -4.7619 0.8904 33 1 2.1944 -5.9705 -2.0552 34 1 3.1432 -7.1896 -1.1709 35 1 1.4424 -8.3223 -2.5190 36 1 1.0285 -8.4932 -0.7963 37 1 -0.8450 -7.7807 -2.0956 38 1 4.5057 -10.4025 -0.0979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733621205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:33 Heat of formation + Delta-G solvation = -204.218314 kcal Electronic energy + Delta-G solvation = -30382.846739 eV Core-core repulsion = 25426.703026 eV Total energy + Delta-G solvation = -4956.143713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.29657 -48.83786 -48.77219 -44.96033 -41.16056 -38.37959 -37.18166 -36.67074 -35.89558 -33.61175 -32.49984 -30.82442 -29.39990 -27.90276 -26.00041 -24.93493 -24.08288 -23.72494 -22.97692 -21.37077 -19.83491 -19.74007 -19.42208 -19.28590 -18.79461 -18.35796 -18.17089 -17.57425 -17.08951 -16.71976 -16.35812 -15.89677 -15.76829 -15.67517 -15.46698 -15.30522 -15.19753 -15.17524 -15.07485 -14.92449 -14.92023 -14.59635 -14.18647 -13.76634 -13.51110 -13.14352 -13.03632 -12.93507 -12.74180 -12.54839 -12.33788 -12.09071 -12.07891 -11.88842 -11.60065 -11.00122 -10.92384 -10.72583 -9.93169 -9.07478 -7.97807 -5.28895 -0.79541 0.79639 0.98531 1.31075 1.46460 1.48503 1.55623 1.58532 1.74248 2.31566 2.54952 2.62660 3.02103 3.13026 3.35258 3.35951 3.50073 3.61889 3.94898 4.02248 4.04476 4.09069 4.21236 4.27482 4.44950 4.53939 4.60649 4.69234 4.94393 4.97394 5.02571 5.29675 5.46214 5.92824 6.09525 6.23287 6.63383 6.93639 7.29761 8.00451 8.25964 9.25791 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.003429 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.484329 B = 8162.646566 C = 9518.666950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.148 3.852 11 C 0.132 3.868 12 N -0.576 5.576 13 C 0.090 3.910 14 C 0.066 3.934 15 O -0.592 6.592 16 C 0.581 3.419 17 O -0.529 6.529 18 C -0.027 4.027 19 O -0.159 6.159 20 C 0.253 3.747 21 N -0.493 5.493 22 C -0.038 4.038 23 C 0.545 3.455 24 F -0.171 7.171 25 F -0.167 7.167 26 F -0.158 7.158 27 H 0.253 0.747 28 H 0.376 0.624 29 H 0.003 0.997 30 H 0.033 0.967 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.396 0.604 38 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -28.290 -5.415 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.385 5.385 10 C 0.020 3.980 11 C 0.009 3.991 12 N -0.306 5.306 13 C -0.032 4.032 14 C -0.012 4.012 15 O -0.401 6.401 16 C 0.366 3.634 17 O -0.406 6.406 18 C -0.086 4.086 19 O -0.045 6.045 20 C 0.029 3.971 21 N -0.218 5.218 22 C -0.162 4.162 23 C 0.489 3.511 24 F -0.153 7.153 25 F -0.148 7.148 26 F -0.139 7.139 27 H 0.062 0.938 28 H 0.208 0.792 29 H 0.021 0.979 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.246 0.754 38 H 0.347 0.653 Dipole moment (debyes) X Y Z Total from point charges 8.674 -27.819 -4.397 29.470 hybrid contribution -0.772 1.066 0.106 1.321 sum 7.901 -26.753 -4.291 28.223 Atomic orbital electron populations 1.69822 1.06647 1.26261 1.58989 1.25611 0.96465 1.01183 1.03132 0.85030 0.78136 0.79432 0.76863 1.19108 1.21392 1.22019 1.19621 0.91438 0.85114 1.42016 0.90785 1.42367 1.05711 1.00876 1.89590 1.20972 0.94215 0.85260 0.97546 1.21408 0.93532 0.80524 1.03637 1.47712 1.54569 1.22288 1.06041 1.22383 0.99064 0.97400 0.84305 1.22677 0.84004 0.93690 1.00861 1.86528 1.20953 1.39793 1.92817 1.16825 0.80248 0.81527 0.84788 1.91024 1.54237 1.63560 1.31814 1.22484 1.04047 0.96669 0.85402 1.84825 1.53342 1.33048 1.33314 1.30046 0.88407 0.89160 0.89526 1.70225 1.21138 1.17367 1.13104 1.21474 1.03545 0.97344 0.93814 1.16989 0.74233 0.75613 0.84226 1.93219 1.52393 1.83643 1.86024 1.93221 1.50364 1.91143 1.80055 1.93372 1.95356 1.28649 1.96546 0.93774 0.79199 0.97861 0.94931 0.88262 0.91648 0.88141 0.85931 0.88509 0.93884 0.75413 0.65313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 7 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -39.75 5.60 -343.43 -1.92 -41.67 16 10 C 0.15 6.33 6.58 86.38 0.57 6.90 16 11 C 0.13 4.66 5.53 86.38 0.48 5.14 16 12 N -0.58 -15.90 2.44 -826.46 -2.01 -17.91 16 13 C 0.09 1.57 5.38 86.38 0.46 2.03 16 14 C 0.07 0.85 6.81 71.98 0.49 1.34 16 15 O -0.59 -10.65 13.33 -148.98 -1.99 -12.63 16 16 C 0.58 17.64 7.44 86.46 0.64 18.29 16 17 O -0.53 -20.73 12.95 -4.30 -0.06 -20.78 16 18 C -0.03 -0.61 6.53 24.05 0.16 -0.45 16 19 O -0.16 -1.80 6.44 -7.05 -0.05 -1.85 16 20 C 0.25 1.57 13.21 130.42 1.72 3.30 16 21 N -0.49 -8.61 11.21 -303.12 -3.40 -12.01 16 22 C -0.04 -0.91 6.49 41.84 0.27 -0.64 16 23 C 0.54 15.86 3.28 71.24 0.23 16.09 16 24 F -0.17 -5.09 17.30 44.97 0.78 -4.31 16 25 F -0.17 -4.60 17.27 44.97 0.78 -3.82 16 26 F -0.16 -5.52 13.69 44.97 0.62 -4.91 16 27 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.38 21.18 7.67 -92.71 -0.71 20.47 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 3.37 7.80 -2.39 -0.02 3.35 16 32 H 0.07 2.64 7.36 -2.39 -0.02 2.62 16 33 H 0.10 1.83 8.02 -2.38 -0.02 1.81 16 34 H 0.12 1.49 5.44 -2.39 -0.01 1.48 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 0.56 7.23 -2.39 -0.02 0.54 16 37 H 0.40 3.59 9.12 -74.06 -0.68 2.92 16 38 H 0.33 -2.94 8.06 -2.91 -0.02 -2.97 16 Total: -1.00 -84.49 342.16 1.17 -83.32 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -0.23 Total: 13.06 kcal Atomic # 6 Polarization: 28.21 SS G_CDS: 6.34 Total: 34.54 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -7.05 Total: -131.74 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.09 Total: -35.26 kcal Atomic # 9 Polarization: -15.21 SS G_CDS: 2.17 Total: -13.04 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -84.49 1.17 -83.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733621205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.894 kcal (2) G-P(sol) polarization free energy of solvation -84.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds