Wall clock time and date at job start Tue Mar 31 2020 19:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.46754 * 324.99656 * 10 9 7 12 12 C 1.52999 * 109.47225 * 84.99627 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00485 * 12 10 9 14 14 C 1.53004 * 109.47375 * 204.99797 * 10 9 7 15 15 N 1.46502 * 109.46925 * 54.99871 * 14 10 9 16 16 C 1.34769 * 119.99943 * 180.02562 * 15 14 10 17 17 O 1.21630 * 120.00340 * 0.02562 * 16 15 14 18 18 C 1.47347 * 120.00066 * 179.97438 * 16 15 14 19 19 C 1.36304 * 122.54490 * 179.97438 * 18 16 15 20 20 S 1.71012 * 109.02130 * 179.97438 * 19 18 16 21 21 C 1.75970 * 90.63107 * 0.02562 * 20 19 18 22 22 C 1.47381 * 125.23140 * 180.02562 * 21 20 19 23 23 N 1.31611 * 125.85611 * 179.66221 * 22 21 20 24 24 C 1.33638 * 109.24362 * 179.86536 * 23 22 21 25 25 C 1.35000 * 108.41741 * 0.39753 * 24 23 22 26 26 N 1.36582 * 125.86132 * 359.97038 * 22 21 20 27 27 H 0.97005 * 126.50761 * 359.96195 * 26 22 21 28 28 N 1.29959 * 109.53172 * 359.75340 * 21 20 19 29 29 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47083 * 185.00479 * 12 10 9 32 32 H 1.09000 * 109.47338 * 304.99767 * 12 10 9 33 33 H 0.96699 * 113.99955 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47038 * 174.99541 * 14 10 9 35 35 H 1.08999 * 109.47047 * 295.00167 * 14 10 9 36 36 H 0.97003 * 120.00245 * 0.02562 * 15 14 10 37 37 H 1.08007 * 125.48778 * 359.97438 * 19 18 16 38 38 H 1.07998 * 125.78690 * 180.12177 * 24 23 22 39 39 H 1.08001 * 126.46218 * 179.79192 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5670 -3.2082 0.5714 12 6 4.2521 -2.9713 -1.4573 13 8 5.0652 -2.0615 -2.2010 14 6 5.5018 -2.2607 0.5862 15 7 5.3698 -1.6694 1.9200 16 6 6.4708 -1.3934 2.6467 17 8 7.5740 -1.6348 2.1950 18 6 6.3381 -0.7982 3.9881 19 6 7.4156 -0.4988 4.7673 20 16 6.8679 0.1724 6.2417 21 6 5.1960 0.0085 5.7178 22 6 4.0153 0.4035 6.5064 23 7 2.7607 0.2923 6.1245 24 6 1.9628 0.7467 7.0954 25 6 2.7347 1.1665 8.1203 26 7 4.0354 0.9532 7.7566 27 1 4.8230 1.1540 8.2861 28 7 5.1629 -0.5092 4.5262 29 1 -0.4850 0.8400 0.0004 30 1 3.8645 -0.3622 -0.0119 31 1 4.7178 -3.9568 -1.4556 32 1 3.2659 -3.0364 -1.9170 33 1 5.1974 -2.3165 -3.1243 34 1 6.0134 -3.2200 0.6630 35 1 6.0783 -1.5915 -0.0525 36 1 4.4900 -1.4765 2.2802 37 1 8.4489 -0.6595 4.4970 38 1 0.8837 0.7773 7.0635 39 1 2.3897 1.5902 9.0519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734372992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:29 Heat of formation + Delta-G solvation = 46.005670 kcal Electronic energy + Delta-G solvation = -26165.803848 eV Core-core repulsion = 22237.413024 eV Total energy + Delta-G solvation = -3928.390824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18186 -40.37868 -38.55200 -37.13980 -34.97661 -33.48794 -32.84976 -31.87187 -31.37378 -29.11946 -28.89686 -26.56312 -25.02392 -23.39394 -22.81346 -21.97288 -20.73720 -20.08323 -19.35662 -19.23068 -17.98033 -17.73429 -16.81131 -16.60013 -15.78048 -15.71609 -15.30346 -15.08284 -14.60022 -14.41107 -14.24425 -13.94888 -13.87179 -13.49909 -13.41759 -13.23226 -12.98951 -12.71715 -12.29453 -12.26353 -11.52055 -10.92133 -10.75384 -10.63205 -10.45598 -10.22633 -10.18463 -10.15094 -10.03625 -9.89362 -9.57975 -9.52622 -9.40293 -8.88296 -8.69147 -8.30086 -7.22484 -5.70392 -3.06106 -0.02372 0.71327 1.16946 1.43008 2.17198 2.41856 3.05760 3.43150 3.49710 3.51179 3.54515 3.57002 3.83123 4.35739 4.69391 4.71874 4.87605 4.95180 5.01494 5.09624 5.20853 5.28965 5.41394 5.55167 5.59406 5.76045 5.86871 5.98424 6.00718 6.26371 6.43713 6.45146 6.67416 6.78381 6.84171 7.21741 7.80280 7.89009 8.01961 8.16934 8.42154 8.48374 9.26113 9.99275 10.18307 11.47446 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.004273 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.398637 B = 6550.860454 C = 8744.368721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.014 3.986 3 Si 0.878 3.122 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.114 3.886 15 N -0.694 5.694 16 C 0.587 3.413 17 O -0.546 6.546 18 C 0.024 3.976 19 C -0.206 4.206 20 S 0.168 5.832 21 C 0.124 3.876 22 C 0.255 3.745 23 N -0.418 5.418 24 C -0.019 4.019 25 C -0.029 4.029 26 N -0.561 5.561 27 H 0.420 0.580 28 N -0.389 5.389 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.365 0.635 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.421 0.579 37 H 0.197 0.803 38 H 0.181 0.819 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.337 -0.159 17.804 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.380 5.380 10 C 0.061 3.939 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.368 6.368 14 C -0.011 4.011 15 N -0.345 5.345 16 C 0.370 3.630 17 O -0.424 6.424 18 C -0.113 4.113 19 C -0.349 4.349 20 S 0.424 5.576 21 C -0.154 4.154 22 C -0.007 4.007 23 N -0.138 5.138 24 C -0.170 4.170 25 C -0.165 4.165 26 N -0.167 5.167 27 H 0.258 0.742 28 N -0.104 5.104 29 H 0.069 0.931 30 H 0.199 0.801 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.210 0.790 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.260 0.740 37 H 0.214 0.786 38 H 0.198 0.802 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.540 -0.134 17.884 22.431 hybrid contribution 0.715 1.113 -0.265 1.349 sum 14.254 0.979 17.619 22.684 Atomic orbital electron populations 1.69698 1.05095 1.25805 1.57172 1.24583 0.95100 0.97068 1.01463 0.86635 0.79425 0.85136 0.78017 1.20754 1.20141 1.21942 1.19012 0.80339 0.94688 1.43708 0.89151 1.42714 1.03951 1.01703 1.89640 1.20566 0.90320 0.90813 0.92237 0.90636 1.23008 0.93924 0.90313 0.94919 1.86529 1.72535 1.52047 1.25709 1.21702 0.98744 0.98488 0.82118 1.45929 1.09839 1.61194 1.17494 1.17016 0.84893 0.78486 0.82653 1.90787 1.25823 1.54710 1.71123 1.20640 0.86462 1.05725 0.98501 1.26837 1.05712 1.04910 0.97408 1.83495 1.01061 1.56557 1.16450 1.23901 0.92962 1.04883 0.93639 1.19486 0.91304 1.05411 0.84512 1.70658 0.98227 1.17049 1.27883 1.22650 1.00578 1.03572 0.90213 1.22984 0.82403 1.08242 1.02875 1.43341 1.09282 1.48909 1.15139 0.74201 1.66810 1.26101 1.10295 1.07216 0.93116 0.80093 0.95117 0.92694 0.78957 0.91368 0.90333 0.74040 0.78583 0.80187 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.62 13.97 55.49 0.78 -28.85 16 2 C 0.01 0.43 5.50 -17.43 -0.10 0.33 16 3 Si 0.88 23.43 27.74 -169.99 -4.72 18.71 16 4 H -0.28 -7.61 7.11 56.52 0.40 -7.20 16 5 H -0.28 -7.17 6.51 56.52 0.37 -6.80 16 6 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 7 C -0.25 -7.00 10.41 -15.06 -0.16 -7.15 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.75 4.31 -53.43 -0.23 -17.98 16 10 C 0.17 3.33 2.84 -67.93 -0.19 3.14 16 11 H 0.08 1.44 8.08 -51.92 -0.42 1.02 16 12 C 0.06 1.03 6.86 37.16 0.25 1.29 16 13 O -0.56 -9.82 12.64 -35.23 -0.45 -10.27 16 14 C 0.11 2.05 5.12 -4.04 -0.02 2.03 16 15 N -0.69 -12.92 5.38 -61.40 -0.33 -13.25 16 16 C 0.59 10.60 7.80 -12.56 -0.10 10.51 16 17 O -0.55 -10.58 16.68 5.25 0.09 -10.49 16 18 C 0.02 0.38 6.68 -84.59 -0.56 -0.18 16 19 C -0.21 -2.46 10.63 30.04 0.32 -2.14 16 20 S 0.17 1.52 23.17 -107.50 -2.49 -0.97 16 21 C 0.12 1.71 7.47 -14.62 -0.11 1.60 16 22 C 0.25 3.45 8.05 -154.62 -1.25 2.20 16 23 N -0.42 -6.88 11.28 -11.30 -0.13 -7.01 16 24 C -0.02 -0.22 11.84 -17.92 -0.21 -0.43 16 25 C -0.03 -0.23 12.03 -16.51 -0.20 -0.43 16 26 N -0.56 -4.79 6.22 -10.62 -0.07 -4.86 16 27 H 0.42 1.98 8.96 -40.82 -0.37 1.62 16 28 N -0.39 -6.57 10.07 -8.01 -0.08 -6.65 16 29 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 30 H 0.37 9.19 5.65 -40.82 -0.23 8.96 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.37 4.53 9.12 45.56 0.42 4.95 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.53 7.39 -51.93 -0.38 1.15 16 36 H 0.42 8.43 7.62 -40.82 -0.31 8.12 16 37 H 0.20 1.97 8.01 -52.48 -0.42 1.55 16 38 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -38.89 359.15 -7.95 -46.85 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -3.42 Total: 18.61 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -2.32 Total: 10.75 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -0.06 Total: -78.59 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.36 Total: -20.76 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.72 Total: 18.71 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.49 Total: -0.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.89 -7.95 -46.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734372992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.851 kcal (2) G-P(sol) polarization free energy of solvation -38.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds