Wall clock time and date at job start Tue Mar 31 2020 19:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.46754 * 324.99656 * 10 9 7 12 12 C 1.52999 * 109.47225 * 84.99627 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00485 * 12 10 9 14 14 C 1.53004 * 109.47375 * 204.99797 * 10 9 7 15 15 N 1.46502 * 109.46925 * 54.99871 * 14 10 9 16 16 C 1.34769 * 119.99943 * 180.02562 * 15 14 10 17 17 O 1.21630 * 120.00340 * 0.02562 * 16 15 14 18 18 C 1.47347 * 120.00066 * 179.97438 * 16 15 14 19 19 C 1.36304 * 122.54490 * 179.97438 * 18 16 15 20 20 S 1.71012 * 109.02130 * 179.97438 * 19 18 16 21 21 C 1.75970 * 90.63107 * 0.02562 * 20 19 18 22 22 C 1.47381 * 125.23140 * 180.02562 * 21 20 19 23 23 N 1.31611 * 125.85611 * 179.66221 * 22 21 20 24 24 C 1.33638 * 109.24362 * 179.86536 * 23 22 21 25 25 C 1.35000 * 108.41741 * 0.39753 * 24 23 22 26 26 N 1.36582 * 125.86132 * 359.97038 * 22 21 20 27 27 H 0.97005 * 126.50761 * 359.96195 * 26 22 21 28 28 N 1.29959 * 109.53172 * 359.75340 * 21 20 19 29 29 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47083 * 185.00479 * 12 10 9 32 32 H 1.09000 * 109.47338 * 304.99767 * 12 10 9 33 33 H 0.96699 * 113.99955 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47038 * 174.99541 * 14 10 9 35 35 H 1.08999 * 109.47047 * 295.00167 * 14 10 9 36 36 H 0.97003 * 120.00245 * 0.02562 * 15 14 10 37 37 H 1.08007 * 125.48778 * 359.97438 * 19 18 16 38 38 H 1.07998 * 125.78690 * 180.12177 * 24 23 22 39 39 H 1.08001 * 126.46218 * 179.79192 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5670 -3.2082 0.5714 12 6 4.2521 -2.9713 -1.4573 13 8 5.0652 -2.0615 -2.2010 14 6 5.5018 -2.2607 0.5862 15 7 5.3698 -1.6694 1.9200 16 6 6.4708 -1.3934 2.6467 17 8 7.5740 -1.6348 2.1950 18 6 6.3381 -0.7982 3.9881 19 6 7.4156 -0.4988 4.7673 20 16 6.8679 0.1724 6.2417 21 6 5.1960 0.0085 5.7178 22 6 4.0153 0.4035 6.5064 23 7 2.7607 0.2923 6.1245 24 6 1.9628 0.7467 7.0954 25 6 2.7347 1.1665 8.1203 26 7 4.0354 0.9532 7.7566 27 1 4.8230 1.1540 8.2861 28 7 5.1629 -0.5092 4.5262 29 1 -0.4850 0.8400 0.0004 30 1 3.8645 -0.3622 -0.0119 31 1 4.7178 -3.9568 -1.4556 32 1 3.2659 -3.0364 -1.9170 33 1 5.1974 -2.3165 -3.1243 34 1 6.0134 -3.2200 0.6630 35 1 6.0783 -1.5915 -0.0525 36 1 4.4900 -1.4765 2.2802 37 1 8.4489 -0.6595 4.4970 38 1 0.8837 0.7773 7.0635 39 1 2.3897 1.5902 9.0519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734372992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:29 Heat of formation + Delta-G solvation = 10.912210 kcal Electronic energy + Delta-G solvation = -26167.325615 eV Core-core repulsion = 22237.413024 eV Total energy + Delta-G solvation = -3929.912591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99309 -41.53968 -39.82069 -38.64728 -36.47981 -35.28851 -33.70012 -33.42791 -32.74122 -30.71154 -29.99075 -27.76024 -26.18130 -25.32831 -24.11760 -22.77208 -21.80456 -21.66393 -20.53891 -20.12239 -19.79096 -18.83727 -18.30189 -17.84314 -17.06791 -16.86703 -16.62483 -16.30653 -16.15472 -15.75737 -15.21853 -15.15389 -15.04779 -14.84941 -14.71788 -14.51196 -14.42545 -14.24999 -14.15413 -13.22493 -13.20640 -12.87356 -12.67917 -12.40769 -11.90299 -11.81130 -11.42390 -11.33676 -11.10855 -11.06932 -11.05949 -10.99290 -10.75350 -10.47737 -10.10110 -9.33225 -9.13165 -8.02307 -5.33210 -0.93549 -0.14586 0.25050 0.41769 1.26582 1.32983 1.37400 1.41054 1.66963 2.05545 2.18980 2.34290 2.46615 2.97933 3.30086 3.38459 3.45752 3.68530 3.87021 3.96687 4.00376 4.11169 4.34421 4.36194 4.49917 4.50202 4.57611 4.61999 4.77235 4.94287 4.96942 5.13478 5.35784 5.63660 5.76400 6.12076 6.21788 6.31821 6.51670 6.99134 7.01891 7.04786 7.08645 7.82507 8.00629 9.18992 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.004273 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.398637 B = 6550.860454 C = 8744.368721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.050 4.050 3 Si 0.940 3.060 4 H -0.290 1.290 5 H -0.264 1.264 6 H -0.294 1.294 7 C -0.220 4.220 8 H 0.069 0.931 9 N -0.741 5.741 10 C 0.163 3.837 11 H 0.077 0.923 12 C 0.069 3.931 13 O -0.583 6.583 14 C 0.125 3.875 15 N -0.703 5.703 16 C 0.586 3.414 17 O -0.566 6.566 18 C -0.013 4.013 19 C -0.207 4.207 20 S 0.310 5.690 21 C 0.089 3.911 22 C 0.226 3.774 23 N -0.488 5.488 24 C -0.064 4.064 25 C 0.017 3.983 26 N -0.539 5.539 27 H 0.440 0.560 28 N -0.440 5.440 29 H 0.256 0.744 30 H 0.361 0.639 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.388 0.612 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.216 0.784 38 H 0.186 0.814 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.217 0.570 20.362 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.242 4.242 3 Si 0.770 3.230 4 H -0.217 1.217 5 H -0.190 1.190 6 H -0.220 1.220 7 C -0.351 4.351 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.055 3.945 11 H 0.095 0.905 12 C -0.012 4.012 13 O -0.390 6.390 14 C 0.001 3.999 15 N -0.352 5.352 16 C 0.370 3.630 17 O -0.447 6.447 18 C -0.150 4.150 19 C -0.350 4.350 20 S 0.566 5.434 21 C -0.188 4.188 22 C -0.036 4.036 23 N -0.210 5.210 24 C -0.215 4.215 25 C -0.120 4.120 26 N -0.147 5.147 27 H 0.282 0.718 28 N -0.157 5.157 29 H 0.065 0.935 30 H 0.194 0.806 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.249 0.751 37 H 0.233 0.767 38 H 0.203 0.797 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 16.507 0.564 20.443 26.281 hybrid contribution -0.096 0.827 -0.885 1.215 sum 16.411 1.391 19.558 25.569 Atomic orbital electron populations 1.69832 1.06588 1.26226 1.60069 1.25205 0.95794 1.00135 1.03056 0.85631 0.78553 0.81560 0.77299 1.21728 1.18986 1.22032 1.19013 0.82133 0.93543 1.40361 0.91316 1.42698 1.02494 1.03370 1.89791 1.20848 0.90693 0.88789 0.94189 0.90515 1.22754 0.93676 0.92004 0.92758 1.86469 1.72232 1.52653 1.27641 1.21581 0.97395 0.99164 0.81752 1.45995 1.09740 1.61754 1.17746 1.17371 0.84243 0.77833 0.83527 1.90749 1.26135 1.55767 1.72000 1.20320 0.87621 1.08743 0.98315 1.27282 1.05916 1.03136 0.98680 1.82894 0.95425 1.52714 1.12320 1.24206 0.95947 1.05082 0.93527 1.19458 0.90626 1.07176 0.86293 1.70498 1.00468 1.19191 1.30817 1.23011 1.01372 1.05852 0.91242 1.23714 0.81240 1.04207 1.02861 1.43266 1.10457 1.47312 1.13626 0.71757 1.66731 1.27469 1.12145 1.09319 0.93512 0.80624 0.90912 0.94552 0.76305 0.89191 0.91635 0.75067 0.76729 0.79691 0.74154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.41 13.97 21.65 0.30 -64.10 16 2 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 3 Si 0.94 50.16 27.74 68.60 1.90 52.06 16 4 H -0.29 -15.78 7.11 99.48 0.71 -15.07 16 5 H -0.26 -13.44 6.51 99.48 0.65 -12.80 16 6 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 7 C -0.22 -12.75 10.41 84.03 0.87 -11.88 16 8 H 0.07 4.24 8.06 -2.91 -0.02 4.22 16 9 N -0.74 -36.19 4.31 -322.94 -1.39 -37.58 16 10 C 0.16 6.34 2.84 44.99 0.13 6.46 16 11 H 0.08 2.95 8.08 -2.38 -0.02 2.93 16 12 C 0.07 2.29 6.86 71.98 0.49 2.78 16 13 O -0.58 -19.36 12.64 -148.98 -1.88 -21.24 16 14 C 0.13 4.47 5.12 86.38 0.44 4.91 16 15 N -0.70 -26.78 5.38 -466.43 -2.51 -29.29 16 16 C 0.59 21.42 7.80 86.64 0.68 22.10 16 17 O -0.57 -21.84 16.68 -4.13 -0.07 -21.91 16 18 C -0.01 -0.40 6.68 41.00 0.27 -0.13 16 19 C -0.21 -4.52 10.63 67.37 0.72 -3.80 16 20 S 0.31 4.55 23.17 -56.49 -1.31 3.24 16 21 C 0.09 2.40 7.47 87.38 0.65 3.05 16 22 C 0.23 6.02 8.05 136.30 1.10 7.12 16 23 N -0.49 -16.69 11.28 -189.66 -2.14 -18.83 16 24 C -0.06 -1.53 11.84 83.67 0.99 -0.54 16 25 C 0.02 0.23 12.03 83.18 1.00 1.23 16 26 N -0.54 -7.71 6.22 -187.53 -1.17 -8.88 16 27 H 0.44 2.30 8.96 -92.70 -0.83 1.47 16 28 N -0.44 -15.24 10.07 -179.25 -1.80 -17.04 16 29 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 30 H 0.36 18.30 5.65 -92.71 -0.52 17.78 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.39 8.83 9.12 -74.06 -0.68 8.16 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.07 2.53 7.39 -2.39 -0.02 2.51 16 36 H 0.41 17.30 7.62 -92.71 -0.71 16.60 16 37 H 0.22 3.72 8.01 -2.91 -0.02 3.70 16 38 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.24 0.34 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -90.85 359.15 -3.89 -94.75 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -1.64 Total: 40.12 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 7.81 Total: 28.70 kcal Atomic # 7 Polarization: -167.01 SS G_CDS: -8.71 Total: -175.72 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.95 Total: -43.15 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.90 Total: 52.06 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.31 Total: 3.24 kcal Total: -90.85 -3.89 -94.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734372992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.658 kcal (2) G-P(sol) polarization free energy of solvation -90.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds