Wall clock time and date at job start Tue Mar 31 2020 19:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21622 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.47350 * 119.99790 * 180.02562 * 16 15 14 19 19 C 1.36298 * 122.54182 * 180.02562 * 18 16 15 20 20 S 1.71011 * 109.01894 * 179.97438 * 19 18 16 21 21 C 1.75974 * 90.63331 * 359.97438 * 20 19 18 22 22 C 1.47380 * 125.23457 * 179.97438 * 21 20 19 23 23 N 1.31602 * 125.85767 * 179.66643 * 22 21 20 24 24 C 1.33635 * 109.24544 * 179.86774 * 23 22 21 25 25 C 1.35006 * 108.41822 * 0.40372 * 24 23 22 26 26 N 1.36589 * 125.85857 * 359.97438 * 22 21 20 27 27 H 0.96996 * 126.50687 * 359.96048 * 26 22 21 28 28 N 1.29959 * 109.52949 * 359.76104 * 21 20 19 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 32 32 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 33 33 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 35 35 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 36 36 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 37 37 H 1.08001 * 125.49295 * 359.96848 * 19 18 16 38 38 H 1.07998 * 125.79032 * 180.11827 * 24 23 22 39 39 H 1.07997 * 126.46360 * 179.79602 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3967 -6.2155 2.2457 18 6 -0.5059 -4.7082 4.0229 19 6 -1.3038 -5.4841 4.8097 20 16 -1.6113 -4.6598 6.2762 21 6 -0.6337 -3.2988 5.7389 22 6 -0.3856 -2.0710 6.5155 23 7 0.3479 -1.0492 6.1285 24 6 0.3448 -0.1171 7.0862 25 6 -0.4060 -0.5650 8.1149 26 7 -0.8726 -1.8011 7.7627 27 1 -1.4417 -2.3768 8.2970 28 7 -0.1604 -3.5449 4.5538 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.9722 -3.2261 -1.8952 32 1 3.0428 -4.9390 -1.4164 33 1 1.3838 -4.5509 -3.0904 34 1 0.3131 -4.9201 -0.0155 35 1 1.7553 -5.6711 0.7087 36 1 1.0055 -3.4635 2.3028 37 1 -1.6812 -6.4619 4.5490 38 1 0.8598 0.8314 7.0461 39 1 -0.6016 -0.0448 9.0409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734372998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:33 Heat of formation + Delta-G solvation = 42.968037 kcal Electronic energy + Delta-G solvation = -26058.330070 eV Core-core repulsion = 22129.807524 eV Total energy + Delta-G solvation = -3928.522546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.13170 -40.26031 -38.41621 -36.97800 -34.82339 -33.36837 -32.80121 -31.78859 -31.20128 -29.03346 -28.33129 -26.42258 -24.92558 -23.59029 -22.83145 -21.92596 -20.65464 -19.97869 -19.23197 -19.13624 -17.82782 -17.47647 -16.54603 -16.49327 -15.68392 -15.60472 -15.23351 -14.98211 -14.53789 -14.36162 -14.03768 -13.95481 -13.79668 -13.39000 -13.27510 -13.26149 -12.92201 -12.68925 -12.18510 -11.88167 -11.33145 -10.76128 -10.71968 -10.49656 -10.39992 -10.16181 -10.09635 -10.06352 -10.01809 -9.80429 -9.63870 -9.48914 -9.28440 -8.84005 -8.54027 -8.22752 -6.89684 -5.66510 -2.96593 0.06758 0.80394 1.26149 1.51651 2.25038 2.47813 3.11851 3.51046 3.55461 3.55870 3.56619 3.64585 3.91916 4.44359 4.66071 4.77471 5.00650 5.04459 5.11293 5.14768 5.25472 5.50882 5.62668 5.63607 5.67478 5.83157 5.96495 6.11359 6.14498 6.44314 6.47564 6.59832 6.82439 6.88055 6.94707 7.32110 7.75568 7.85824 8.04229 8.27755 8.49633 8.57374 9.62280 10.16820 10.53024 11.55164 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008734 B = 0.004237 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.180078 B = 6606.798942 C = 9410.688006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.711 5.711 10 C 0.166 3.834 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.117 3.883 15 N -0.688 5.688 16 C 0.587 3.413 17 O -0.549 6.549 18 C 0.027 3.973 19 C -0.206 4.206 20 S 0.164 5.836 21 C 0.123 3.877 22 C 0.259 3.741 23 N -0.418 5.418 24 C -0.020 4.020 25 C -0.030 4.030 26 N -0.561 5.561 27 H 0.420 0.580 28 N -0.385 5.385 29 H 0.255 0.745 30 H 0.389 0.611 31 H 0.049 0.951 32 H 0.026 0.974 33 H 0.363 0.637 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.422 0.578 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 -8.672 17.758 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.353 5.353 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.021 4.021 13 O -0.363 6.363 14 C -0.007 4.007 15 N -0.339 5.339 16 C 0.369 3.631 17 O -0.428 6.428 18 C -0.110 4.110 19 C -0.349 4.349 20 S 0.419 5.581 21 C -0.155 4.155 22 C -0.004 4.004 23 N -0.138 5.138 24 C -0.171 4.171 25 C -0.167 4.167 26 N -0.167 5.167 27 H 0.258 0.742 28 N -0.100 5.100 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.207 0.793 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.260 0.740 37 H 0.214 0.786 38 H 0.197 0.803 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.543 -8.877 17.855 20.102 hybrid contribution 0.146 0.745 -0.279 0.809 sum -2.397 -8.132 17.576 19.514 Atomic orbital electron populations 1.69671 1.05098 1.25674 1.56685 1.24715 0.95399 0.97567 1.02475 0.86304 0.78550 0.83785 0.77707 1.21512 1.21806 1.21094 1.19130 0.90798 0.84029 1.43892 0.91313 1.42330 1.06023 0.98988 1.87934 1.20581 0.95090 0.87045 0.91867 0.91590 1.23047 0.86476 0.97205 0.95417 1.86576 1.32209 1.91685 1.25841 1.21645 0.99699 0.97058 0.82346 1.45889 1.48615 1.21834 1.17521 1.17002 0.79162 0.84324 0.82608 1.90776 1.58217 1.22243 1.71577 1.20659 1.01617 0.90270 0.98478 1.26822 1.04073 1.06696 0.97307 1.83457 1.47341 1.10399 1.16856 1.23893 1.01861 0.95886 0.93880 1.19489 1.01639 0.94609 0.84633 1.70650 1.15820 0.99488 1.27883 1.22621 1.03420 1.00602 0.90493 1.22960 1.03714 0.87085 1.02896 1.43342 1.40979 1.17064 1.15298 0.74211 1.66814 1.19929 1.15976 1.07276 0.93518 0.77669 0.93256 0.95557 0.79252 0.90315 0.91868 0.73976 0.78637 0.80332 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.70 13.06 55.49 0.72 -27.98 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.89 9.93 -15.06 -0.15 -7.04 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -18.08 4.51 -53.43 -0.24 -18.32 16 10 C 0.17 3.37 2.84 -67.93 -0.19 3.17 16 11 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 12 C 0.06 1.09 6.86 37.16 0.25 1.34 16 13 O -0.56 -10.36 12.64 -35.23 -0.45 -10.81 16 14 C 0.12 2.24 5.12 -4.04 -0.02 2.22 16 15 N -0.69 -13.58 5.38 -61.41 -0.33 -13.91 16 16 C 0.59 11.20 7.80 -12.55 -0.10 11.10 16 17 O -0.55 -11.21 16.68 5.26 0.09 -11.12 16 18 C 0.03 0.45 6.68 -84.59 -0.56 -0.11 16 19 C -0.21 -2.62 10.63 30.03 0.32 -2.30 16 20 S 0.16 1.58 23.17 -107.50 -2.49 -0.91 16 21 C 0.12 1.76 7.47 -14.62 -0.11 1.65 16 22 C 0.26 3.60 8.05 -154.62 -1.25 2.35 16 23 N -0.42 -6.98 11.28 -11.30 -0.13 -7.11 16 24 C -0.02 -0.24 11.84 -17.92 -0.21 -0.45 16 25 C -0.03 -0.25 12.03 -16.51 -0.20 -0.45 16 26 N -0.56 -4.98 6.22 -10.63 -0.07 -5.05 16 27 H 0.42 2.14 8.96 -40.82 -0.37 1.77 16 28 N -0.38 -6.77 10.07 -8.01 -0.08 -6.85 16 29 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.39 10.97 7.80 -40.82 -0.32 10.66 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.36 4.86 9.12 45.56 0.42 5.27 16 34 H 0.08 1.65 7.39 -51.93 -0.38 1.27 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.42 8.98 7.62 -40.82 -0.31 8.67 16 37 H 0.20 2.12 8.01 -52.49 -0.42 1.70 16 38 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -37.89 362.28 -8.31 -46.20 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -3.46 Total: 21.28 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -2.31 Total: 11.25 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -0.12 Total: -79.23 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.36 Total: -21.93 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.49 Total: -0.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.89 -8.31 -46.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734372998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.165 kcal (2) G-P(sol) polarization free energy of solvation -37.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds