Wall clock time and date at job start Tue Mar 31 2020 19:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21622 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.47350 * 119.99790 * 180.02562 * 16 15 14 19 19 C 1.36298 * 122.54182 * 180.02562 * 18 16 15 20 20 S 1.71011 * 109.01894 * 179.97438 * 19 18 16 21 21 C 1.75974 * 90.63331 * 359.97438 * 20 19 18 22 22 C 1.47380 * 125.23457 * 179.97438 * 21 20 19 23 23 N 1.31602 * 125.85767 * 179.66643 * 22 21 20 24 24 C 1.33635 * 109.24544 * 179.86774 * 23 22 21 25 25 C 1.35006 * 108.41822 * 0.40372 * 24 23 22 26 26 N 1.36589 * 125.85857 * 359.97438 * 22 21 20 27 27 H 0.96996 * 126.50687 * 359.96048 * 26 22 21 28 28 N 1.29959 * 109.52949 * 359.76104 * 21 20 19 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 32 32 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 33 33 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 35 35 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 36 36 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 37 37 H 1.08001 * 125.49295 * 359.96848 * 19 18 16 38 38 H 1.07998 * 125.79032 * 180.11827 * 24 23 22 39 39 H 1.07997 * 126.46360 * 179.79602 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3967 -6.2155 2.2457 18 6 -0.5059 -4.7082 4.0229 19 6 -1.3038 -5.4841 4.8097 20 16 -1.6113 -4.6598 6.2762 21 6 -0.6337 -3.2988 5.7389 22 6 -0.3856 -2.0710 6.5155 23 7 0.3479 -1.0492 6.1285 24 6 0.3448 -0.1171 7.0862 25 6 -0.4060 -0.5650 8.1149 26 7 -0.8726 -1.8011 7.7627 27 1 -1.4417 -2.3768 8.2970 28 7 -0.1604 -3.5449 4.5538 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.9722 -3.2261 -1.8952 32 1 3.0428 -4.9390 -1.4164 33 1 1.3838 -4.5509 -3.0904 34 1 0.3131 -4.9201 -0.0155 35 1 1.7553 -5.6711 0.7087 36 1 1.0055 -3.4635 2.3028 37 1 -1.6812 -6.4619 4.5490 38 1 0.8598 0.8314 7.0461 39 1 -0.6016 -0.0448 9.0409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734372998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:32 Heat of formation + Delta-G solvation = 8.936578 kcal Electronic energy + Delta-G solvation = -26059.805784 eV Core-core repulsion = 22129.807524 eV Total energy + Delta-G solvation = -3929.998260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.97225 -41.49829 -39.76446 -38.54652 -36.40506 -35.21352 -33.68021 -33.19285 -32.68046 -30.20564 -29.95370 -27.69723 -26.16300 -25.60951 -24.11100 -22.75353 -21.75891 -21.57965 -20.43920 -20.08283 -19.40364 -18.80710 -18.15687 -17.83318 -17.01875 -16.82855 -16.62430 -16.18102 -16.09532 -15.61097 -15.39686 -15.13734 -14.93512 -14.86199 -14.69107 -14.45038 -14.31835 -14.22517 -13.65383 -13.19468 -13.03299 -12.75278 -12.62820 -12.29543 -11.92406 -11.73707 -11.38429 -11.31742 -11.08112 -11.04215 -11.00317 -10.91837 -10.71008 -10.44316 -10.04416 -9.10722 -8.99121 -7.88360 -5.17413 -0.90877 -0.11657 0.27168 0.45184 1.29282 1.47089 1.52008 1.56489 1.69252 2.08187 2.24285 2.38179 2.59088 3.01232 3.41311 3.45346 3.61663 3.88691 3.93976 4.02124 4.03482 4.12955 4.35814 4.43018 4.51822 4.54461 4.58503 4.64024 4.84763 4.96399 5.00329 5.20133 5.41058 5.53991 5.65460 6.15601 6.29685 6.34734 6.56544 7.01960 7.06502 7.09726 7.37643 8.09909 8.34974 9.34653 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008734 B = 0.004237 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.180078 B = 6606.798942 C = 9410.688006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.722 5.722 10 C 0.159 3.841 11 H 0.074 0.926 12 C 0.068 3.932 13 O -0.583 6.583 14 C 0.127 3.873 15 N -0.697 5.697 16 C 0.584 3.416 17 O -0.570 6.570 18 C -0.011 4.011 19 C -0.208 4.208 20 S 0.308 5.692 21 C 0.089 3.911 22 C 0.227 3.773 23 N -0.487 5.487 24 C -0.064 4.064 25 C 0.016 3.984 26 N -0.540 5.540 27 H 0.440 0.560 28 N -0.438 5.438 29 H 0.247 0.753 30 H 0.371 0.629 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.386 0.614 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.215 0.785 38 H 0.187 0.813 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -9.558 20.524 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.362 5.362 10 C 0.050 3.950 11 H 0.092 0.908 12 C -0.013 4.013 13 O -0.390 6.390 14 C 0.003 3.997 15 N -0.346 5.346 16 C 0.368 3.632 17 O -0.452 6.452 18 C -0.148 4.148 19 C -0.352 4.352 20 S 0.564 5.436 21 C -0.187 4.187 22 C -0.035 4.035 23 N -0.208 5.208 24 C -0.215 4.215 25 C -0.121 4.121 26 N -0.147 5.147 27 H 0.282 0.718 28 N -0.154 5.154 29 H 0.056 0.944 30 H 0.202 0.798 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.231 0.769 38 H 0.204 0.796 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.656 -9.834 20.626 23.004 hybrid contribution 0.146 0.924 -0.965 1.344 sum -2.510 -8.911 19.660 21.731 Atomic orbital electron populations 1.69855 1.06752 1.25695 1.59375 1.25514 0.96172 1.00988 1.03740 0.85265 0.77172 0.79553 0.78069 1.20220 1.22643 1.20572 1.19556 0.91382 0.84943 1.41129 0.90234 1.42430 1.05255 1.00273 1.88221 1.20857 0.94936 0.85358 0.93845 0.90841 1.22823 0.86564 0.98674 0.93193 1.86527 1.32790 1.91859 1.27789 1.21522 0.98805 0.97402 0.81934 1.45941 1.49276 1.21587 1.17747 1.17412 0.78349 0.83832 0.83591 1.90732 1.58987 1.22911 1.72533 1.20312 1.04630 0.91643 0.98243 1.27263 1.02078 1.07190 0.98667 1.82823 1.42913 1.05288 1.12537 1.24228 1.02957 0.97825 0.93721 1.19430 1.03080 0.94485 0.86476 1.70492 1.17939 1.01596 1.30791 1.23018 1.05920 1.01074 0.91452 1.23718 0.99749 0.85771 1.02887 1.43270 1.40218 1.17436 1.13746 0.71797 1.66733 1.22165 1.17029 1.09467 0.94446 0.79763 0.94433 0.91289 0.76618 0.92447 0.89656 0.75092 0.76853 0.79568 0.74154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.58 13.06 21.65 0.28 -62.29 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 48.35 29.55 68.60 2.03 50.37 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.24 -13.56 9.93 84.03 0.83 -12.72 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.72 -37.92 4.51 -322.94 -1.46 -39.38 16 10 C 0.16 6.54 2.84 44.99 0.13 6.67 16 11 H 0.07 2.90 8.08 -2.39 -0.02 2.88 16 12 C 0.07 2.40 6.86 71.98 0.49 2.89 16 13 O -0.58 -21.31 12.64 -148.98 -1.88 -23.19 16 14 C 0.13 5.00 5.12 86.38 0.44 5.45 16 15 N -0.70 -28.92 5.38 -466.44 -2.51 -31.43 16 16 C 0.58 23.24 7.80 86.64 0.68 23.92 16 17 O -0.57 -23.88 16.68 -4.10 -0.07 -23.95 16 18 C -0.01 -0.38 6.68 41.00 0.27 -0.10 16 19 C -0.21 -5.04 10.63 67.37 0.72 -4.32 16 20 S 0.31 5.04 23.17 -56.49 -1.31 3.74 16 21 C 0.09 2.56 7.47 87.38 0.65 3.21 16 22 C 0.23 6.28 8.05 136.30 1.10 7.37 16 23 N -0.49 -16.89 11.28 -189.66 -2.14 -19.03 16 24 C -0.06 -1.54 11.84 83.67 0.99 -0.55 16 25 C 0.02 0.22 12.03 83.18 1.00 1.22 16 26 N -0.54 -8.14 6.22 -187.53 -1.17 -9.31 16 27 H 0.44 2.69 8.96 -92.71 -0.83 1.86 16 28 N -0.44 -16.11 10.07 -179.25 -1.80 -17.92 16 29 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.37 21.99 7.80 -92.71 -0.72 21.27 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.39 9.89 9.12 -74.06 -0.68 9.21 16 34 H 0.06 2.50 7.39 -2.39 -0.02 2.48 16 35 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.41 18.81 7.62 -92.71 -0.71 18.10 16 37 H 0.21 4.20 8.01 -2.91 -0.02 4.18 16 38 H 0.19 3.74 8.06 -2.91 -0.02 3.71 16 39 H 0.24 0.41 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -89.46 362.28 -4.03 -93.49 By element: Atomic # 1 Polarization: 51.46 SS G_CDS: -1.77 Total: 49.69 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 7.77 Total: 29.21 kcal Atomic # 7 Polarization: -170.56 SS G_CDS: -8.79 Total: -179.36 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.95 Total: -47.14 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.31 Total: 3.74 kcal Total: -89.46 -4.03 -93.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734372998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.430 kcal (2) G-P(sol) polarization free energy of solvation -89.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds