Wall clock time and date at job start Tue Mar 31 2020 19:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46963 * 300.00024 * 3 2 1 6 6 H 1.48508 * 109.47053 * 60.00013 * 3 2 1 7 7 C 1.38802 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99800 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99815 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46844 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99982 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.48144 * 127.83929 * 179.97438 * 13 11 10 15 15 C 1.54388 * 104.61644 * 140.41426 * 14 13 11 16 16 H 1.08999 * 117.61831 * 242.76521 * 15 14 13 17 17 C 1.54152 * 106.22712 * 23.25219 * 15 14 13 18 18 H 1.08997 * 121.78794 * 221.54832 * 17 15 14 19 19 C 1.48149 * 127.83320 * 359.97438 * 13 11 10 20 20 C 1.53002 * 118.12491 * 87.19037 * 15 14 13 21 21 H 1.09003 * 117.44101 * 14.46831 * 20 15 14 22 22 N 1.46494 * 117.44314 * 159.21345 * 20 15 14 23 23 C 1.34782 * 120.00156 * 205.16780 * 22 20 15 24 24 O 1.21561 * 119.99617 * 0.02562 * 23 22 20 25 25 C 1.47864 * 120.00532 * 179.97438 * 23 22 20 26 26 N 1.34556 * 126.04730 * 359.97438 * 25 23 22 27 27 C 1.30864 * 107.27307 * 180.02562 * 26 25 23 28 28 N 1.34586 * 107.62344 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.75293 * 180.02562 * 28 27 26 30 30 N 1.28854 * 108.50443 * 359.97438 * 28 27 26 31 31 H 0.96993 * 120.00790 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46902 * 60.00370 * 10 9 7 33 33 H 1.08998 * 109.47348 * 299.99825 * 10 9 7 34 34 H 1.08998 * 110.40821 * 21.63007 * 14 13 11 35 35 H 1.08999 * 110.40638 * 259.19643 * 14 13 11 36 36 H 1.08997 * 110.41221 * 338.36667 * 19 13 11 37 37 H 1.09004 * 110.40716 * 100.68782 * 19 13 11 38 38 H 0.96993 * 120.00392 * 25.16947 * 22 20 15 39 39 H 1.07998 * 126.19344 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9877 -5.3026 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 2.5191 -7.7883 0.0003 15 6 3.5571 -8.4213 -0.9512 16 1 3.1854 -8.9068 -1.8536 17 6 4.7569 -7.4541 -0.9848 18 1 5.2790 -7.2189 -1.9123 19 6 4.3254 -6.3006 0.0008 20 6 4.9061 -8.8460 -0.3674 21 1 4.9866 -8.9081 0.7179 22 7 5.6838 -9.8367 -1.1156 23 6 6.5762 -10.6170 -0.4743 24 8 6.7354 -10.4990 0.7251 25 6 7.3608 -11.6174 -1.2293 26 7 7.2821 -11.8511 -2.5520 27 6 8.1323 -12.8066 -2.8290 28 7 8.7343 -13.1624 -1.6791 29 1 9.4128 -13.8490 -1.5834 30 7 8.2583 -12.4367 -0.7267 31 1 -0.4851 0.8399 0.0004 32 1 3.1247 -3.7312 0.8906 33 1 3.1247 -3.7312 -0.8894 34 1 1.5093 -7.9506 -0.3766 35 1 2.6221 -8.2010 1.0039 36 1 4.6783 -5.3406 -0.3757 37 1 4.7104 -6.4791 1.0049 38 1 5.5565 -9.9311 -2.0725 39 1 8.3175 -13.2327 -3.8040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737535827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:46 Heat of formation + Delta-G solvation = 67.954208 kcal Electronic energy + Delta-G solvation = -24752.386122 eV Core-core repulsion = 20824.947058 eV Total energy + Delta-G solvation = -3927.439064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.07209 -40.66110 -39.46314 -37.97130 -35.01870 -34.13668 -32.48132 -32.41183 -31.92391 -29.72684 -28.09606 -26.23610 -25.46592 -24.51172 -23.52838 -21.68814 -21.03509 -20.47190 -19.62399 -19.31913 -17.75916 -17.63188 -17.13666 -16.94016 -16.47120 -15.77310 -15.42488 -15.14078 -14.96898 -14.79205 -14.63683 -13.89639 -13.82837 -13.34924 -13.16123 -12.80039 -12.72763 -12.55040 -12.33895 -11.87156 -11.74461 -11.37136 -11.23310 -11.16209 -11.05910 -11.00628 -10.77198 -10.75188 -10.40570 -10.36961 -9.79874 -9.40730 -9.18396 -9.06314 -8.63735 -8.21948 -6.49142 -6.20596 -3.91186 0.79913 1.46958 1.84788 2.47324 2.76355 2.89034 3.04856 3.22776 3.27124 3.32352 3.35580 3.46349 3.61403 4.00368 4.18269 4.21075 4.28000 4.36047 4.45506 4.73073 4.90724 5.06456 5.14694 5.28423 5.30168 5.40786 5.51146 5.59346 5.61767 5.72273 5.73850 5.83667 5.91616 6.00086 6.08231 6.14478 6.28530 6.89367 7.35649 7.61144 7.67081 7.69122 8.36684 8.53886 9.24851 10.86911 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.001764 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.247063 B =15870.044244 C =16404.765413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.557 3.443 12 O -0.514 6.514 13 N -0.630 5.630 14 C 0.136 3.864 15 C -0.178 4.178 16 H 0.124 0.876 17 C -0.176 4.176 18 H 0.130 0.870 19 C 0.131 3.869 20 C 0.115 3.885 21 H 0.143 0.857 22 N -0.680 5.680 23 C 0.622 3.378 24 O -0.510 6.510 25 C 0.146 3.854 26 N -0.485 5.485 27 C 0.202 3.798 28 N -0.399 5.399 29 H 0.455 0.545 30 N -0.245 5.245 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.490 -28.455 -7.239 35.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.298 4.298 11 C 0.346 3.654 12 O -0.387 6.387 13 N -0.367 5.367 14 C 0.013 3.987 15 C -0.198 4.198 16 H 0.142 0.858 17 C -0.197 4.197 18 H 0.148 0.852 19 C 0.007 3.993 20 C 0.008 3.992 21 H 0.161 0.839 22 N -0.330 5.330 23 C 0.404 3.596 24 O -0.381 6.381 25 C -0.134 4.134 26 N -0.212 5.212 27 C -0.096 4.096 28 N -0.122 5.122 29 H 0.302 0.698 30 N -0.084 5.084 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.250 0.750 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 17.387 -28.157 -5.885 33.612 hybrid contribution 2.591 0.488 -1.000 2.820 sum 19.978 -27.669 -6.886 34.815 Atomic orbital electron populations 1.70023 1.05950 1.27355 1.46941 1.24992 0.95023 0.99027 0.94537 0.86117 0.79602 0.81879 0.77892 1.19598 1.20578 1.20562 1.22905 0.94952 0.91573 1.58843 0.90838 1.85409 1.04900 0.96362 1.96712 1.23518 1.06555 0.94782 1.04919 1.19994 0.85487 0.85181 0.74766 1.90718 1.14833 1.84993 1.48186 1.49205 1.06466 1.05540 1.75465 1.21649 0.98480 0.80313 0.98284 1.24136 0.89613 1.03238 1.02849 0.85762 1.24957 1.02111 0.90245 1.02413 0.85221 1.22366 0.80380 0.98198 0.98317 1.21781 0.92696 0.87619 0.97083 0.83903 1.44906 1.39342 1.36345 1.12395 1.16153 0.78810 0.79067 0.85576 1.90872 1.65742 1.68095 1.13359 1.23696 0.99899 1.00881 0.88938 1.71299 1.21461 1.15596 1.12827 1.26648 0.92885 0.95527 0.94514 1.45294 1.32057 1.29442 1.05452 0.69845 1.74394 1.11853 1.05877 1.16311 0.92231 0.89154 0.89195 0.89028 0.90712 0.89208 0.90130 0.75037 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.03 5.14 36.01 0.18 -2.84 16 11 C 0.56 10.78 7.93 -10.98 -0.09 10.70 16 12 O -0.51 -11.97 16.13 5.56 0.09 -11.88 16 13 N -0.63 -9.03 3.32 -167.14 -0.55 -9.59 16 14 C 0.14 1.58 6.85 -2.41 -0.02 1.57 16 15 C -0.18 -1.58 6.97 -89.29 -0.62 -2.21 16 16 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 17 C -0.18 -1.55 7.34 -87.42 -0.64 -2.19 16 18 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 19 C 0.13 1.41 6.78 -0.54 0.00 1.41 16 20 C 0.11 1.00 5.93 -67.93 -0.40 0.60 16 21 H 0.14 1.39 7.40 -51.93 -0.38 1.01 16 22 N -0.68 -5.69 5.56 -54.74 -0.30 -5.99 16 23 C 0.62 6.72 7.83 -12.32 -0.10 6.62 16 24 O -0.51 -7.19 16.65 5.31 0.09 -7.10 16 25 C 0.15 1.38 7.96 -156.35 -1.24 0.13 16 26 N -0.49 -3.40 11.09 -12.37 -0.14 -3.54 16 27 C 0.20 0.58 13.14 -90.49 -1.19 -0.61 16 28 N -0.40 -1.33 6.93 29.56 0.20 -1.12 16 29 H 0.45 -0.47 8.96 -190.21 -1.71 -2.18 16 30 N -0.24 -2.11 12.30 32.07 0.39 -1.71 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 33 H 0.09 1.71 7.95 -51.92 -0.41 1.30 16 34 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.95 7.30 -51.93 -0.38 0.57 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.41 2.77 8.54 -40.82 -0.35 2.42 16 39 H 0.23 -0.56 8.06 -52.49 -0.42 -0.98 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -40.34 360.42 -10.93 -51.27 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.72 Total: -3.04 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.92 Total: 0.19 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.34 Total: -47.47 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.18 Total: -18.98 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -40.34 -10.93 -51.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737535827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.223 kcal (2) G-P(sol) polarization free energy of solvation -40.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds