Wall clock time and date at job start Tue Mar 31 2020 19:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46963 * 300.00024 * 3 2 1 6 6 H 1.48508 * 109.47053 * 60.00013 * 3 2 1 7 7 C 1.38802 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99800 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99815 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46844 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99982 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.48144 * 127.83929 * 179.97438 * 13 11 10 15 15 C 1.54388 * 104.61644 * 140.41426 * 14 13 11 16 16 H 1.08999 * 117.61831 * 242.76521 * 15 14 13 17 17 C 1.54152 * 106.22712 * 23.25219 * 15 14 13 18 18 H 1.08997 * 121.78794 * 221.54832 * 17 15 14 19 19 C 1.48149 * 127.83320 * 359.97438 * 13 11 10 20 20 C 1.53002 * 118.12491 * 87.19037 * 15 14 13 21 21 H 1.09003 * 117.44101 * 14.46831 * 20 15 14 22 22 N 1.46494 * 117.44314 * 159.21345 * 20 15 14 23 23 C 1.34782 * 120.00156 * 205.16780 * 22 20 15 24 24 O 1.21561 * 119.99617 * 0.02562 * 23 22 20 25 25 C 1.47864 * 120.00532 * 179.97438 * 23 22 20 26 26 N 1.34556 * 126.04730 * 359.97438 * 25 23 22 27 27 C 1.30864 * 107.27307 * 180.02562 * 26 25 23 28 28 N 1.34586 * 107.62344 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.75293 * 180.02562 * 28 27 26 30 30 N 1.28854 * 108.50443 * 359.97438 * 28 27 26 31 31 H 0.96993 * 120.00790 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46902 * 60.00370 * 10 9 7 33 33 H 1.08998 * 109.47348 * 299.99825 * 10 9 7 34 34 H 1.08998 * 110.40821 * 21.63007 * 14 13 11 35 35 H 1.08999 * 110.40638 * 259.19643 * 14 13 11 36 36 H 1.08997 * 110.41221 * 338.36667 * 19 13 11 37 37 H 1.09004 * 110.40716 * 100.68782 * 19 13 11 38 38 H 0.96993 * 120.00392 * 25.16947 * 22 20 15 39 39 H 1.07998 * 126.19344 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9877 -5.3026 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 2.5191 -7.7883 0.0003 15 6 3.5571 -8.4213 -0.9512 16 1 3.1854 -8.9068 -1.8536 17 6 4.7569 -7.4541 -0.9848 18 1 5.2790 -7.2189 -1.9123 19 6 4.3254 -6.3006 0.0008 20 6 4.9061 -8.8460 -0.3674 21 1 4.9866 -8.9081 0.7179 22 7 5.6838 -9.8367 -1.1156 23 6 6.5762 -10.6170 -0.4743 24 8 6.7354 -10.4990 0.7251 25 6 7.3608 -11.6174 -1.2293 26 7 7.2821 -11.8511 -2.5520 27 6 8.1323 -12.8066 -2.8290 28 7 8.7343 -13.1624 -1.6791 29 1 9.4128 -13.8490 -1.5834 30 7 8.2583 -12.4367 -0.7267 31 1 -0.4851 0.8399 0.0004 32 1 3.1247 -3.7312 0.8906 33 1 3.1247 -3.7312 -0.8894 34 1 1.5093 -7.9506 -0.3766 35 1 2.6221 -8.2010 1.0039 36 1 4.6783 -5.3406 -0.3757 37 1 4.7104 -6.4791 1.0049 38 1 5.5565 -9.9311 -2.0725 39 1 8.3175 -13.2327 -3.8040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737535827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:46 Heat of formation + Delta-G solvation = 37.270160 kcal Electronic energy + Delta-G solvation = -24753.716682 eV Core-core repulsion = 20824.947058 eV Total energy + Delta-G solvation = -3928.769624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.48087 -41.59899 -40.48054 -39.21824 -35.97130 -34.66444 -34.57972 -33.40380 -32.40561 -31.12429 -29.15193 -27.72024 -27.03628 -25.39981 -23.85758 -22.43570 -21.72899 -21.31905 -20.75970 -19.96476 -19.57232 -18.39305 -18.12944 -17.60820 -17.41061 -16.88284 -16.76090 -16.62008 -16.19859 -15.73521 -15.67518 -15.30301 -14.99730 -14.63894 -14.34932 -13.98161 -13.72640 -13.47928 -13.37440 -13.21247 -13.13412 -12.90882 -12.64315 -12.56916 -12.04881 -11.77244 -11.72006 -11.64195 -11.59574 -11.31052 -11.15382 -10.86335 -10.84126 -10.27368 -9.93434 -9.85014 -8.67240 -8.34279 -6.12723 0.23127 1.10959 1.21273 1.33822 1.42183 1.45655 1.56164 1.57887 2.01393 2.08856 2.17166 2.27465 2.59362 2.99009 3.00035 3.25344 3.45555 3.52686 3.58735 3.64512 3.83181 4.00798 4.02599 4.15914 4.26562 4.41854 4.47488 4.61056 4.70285 4.77283 4.88186 4.94705 5.05630 5.17166 5.22054 5.30990 5.42825 5.91315 6.20664 6.25667 6.38543 6.86303 7.03467 7.06998 7.08046 8.75283 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.001764 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.247063 B =15870.044244 C =16404.765413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.121 4.121 11 C 0.556 3.444 12 O -0.565 6.565 13 N -0.622 5.622 14 C 0.129 3.871 15 C -0.168 4.168 16 H 0.142 0.858 17 C -0.164 4.164 18 H 0.149 0.851 19 C 0.121 3.879 20 C 0.120 3.880 21 H 0.134 0.866 22 N -0.665 5.665 23 C 0.619 3.381 24 O -0.554 6.554 25 C 0.122 3.878 26 N -0.509 5.509 27 C 0.224 3.776 28 N -0.383 5.383 29 H 0.472 0.528 30 N -0.278 5.278 31 H 0.271 0.729 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.423 0.577 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.642 -29.569 -8.894 38.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.077 5.923 10 C -0.272 4.272 11 C 0.345 3.655 12 O -0.443 6.443 13 N -0.356 5.356 14 C 0.007 3.993 15 C -0.188 4.188 16 H 0.160 0.840 17 C -0.185 4.185 18 H 0.167 0.833 19 C -0.001 4.001 20 C 0.013 3.987 21 H 0.152 0.848 22 N -0.315 5.315 23 C 0.403 3.597 24 O -0.428 6.428 25 C -0.158 4.158 26 N -0.236 5.236 27 C -0.073 4.073 28 N -0.109 5.109 29 H 0.324 0.676 30 N -0.120 5.120 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.262 0.738 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 20.606 -29.337 -7.575 36.642 hybrid contribution 1.728 0.601 -0.532 1.905 sum 22.333 -28.736 -8.107 37.286 Atomic orbital electron populations 1.70185 1.07980 1.28573 1.48031 1.26130 0.95966 1.03308 0.93713 0.84900 0.78636 0.76290 0.78077 1.17980 1.19870 1.19976 1.23233 0.95372 0.91869 1.58831 0.89843 1.85589 1.10432 0.99243 1.97036 1.23318 1.03517 0.93790 1.06570 1.19695 0.85216 0.85680 0.74947 1.90696 1.16943 1.85634 1.51052 1.49105 1.07780 1.05679 1.73078 1.21830 0.98825 0.78806 0.99823 1.24012 0.88857 1.03310 1.02657 0.84043 1.24933 1.01796 0.89306 1.02427 0.83350 1.22664 0.77875 0.99566 0.99983 1.21629 0.92469 0.87773 0.96786 0.84840 1.44773 1.38443 1.35543 1.12738 1.16443 0.78823 0.79243 0.85221 1.90836 1.67262 1.69561 1.15183 1.23430 1.00836 1.01543 0.89989 1.71270 1.23285 1.17471 1.11599 1.27653 0.90438 0.93456 0.95726 1.45290 1.31850 1.28905 1.04827 0.67649 1.74288 1.12442 1.06778 1.18498 0.91973 0.87455 0.87266 0.90365 0.89470 0.88489 0.88613 0.73835 0.69920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.12 -4.94 5.14 71.24 0.37 -4.57 16 11 C 0.56 21.63 7.93 87.66 0.70 22.32 16 12 O -0.56 -27.25 16.13 -3.04 -0.05 -27.30 16 13 N -0.62 -17.22 3.32 -801.11 -2.66 -19.87 16 14 C 0.13 2.90 6.85 86.53 0.59 3.49 16 15 C -0.17 -2.66 6.97 -9.93 -0.07 -2.73 16 16 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.16 -2.47 7.34 -8.72 -0.06 -2.53 16 18 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 19 C 0.12 2.35 6.78 87.74 0.60 2.94 16 20 C 0.12 1.89 5.93 44.99 0.27 2.16 16 21 H 0.13 2.47 7.40 -2.39 -0.02 2.45 16 22 N -0.66 -10.20 5.56 -445.37 -2.48 -12.68 16 23 C 0.62 13.16 7.83 86.79 0.68 13.84 16 24 O -0.55 -15.90 16.65 -3.91 -0.07 -15.96 16 25 C 0.12 2.18 7.96 137.12 1.09 3.27 16 26 N -0.51 -6.02 11.09 -193.04 -2.14 -8.16 16 27 C 0.22 0.52 13.14 180.30 2.37 2.89 16 28 N -0.38 -1.64 6.93 -60.38 -0.42 -2.05 16 29 H 0.47 -2.22 8.96 -219.79 -1.97 -4.19 16 30 N -0.28 -4.54 12.30 -52.44 -0.65 -5.18 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 33 H 0.11 4.01 7.95 -2.40 -0.02 3.99 16 34 H 0.08 2.00 7.88 -2.39 -0.02 1.98 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.78 7.30 -2.39 -0.02 1.76 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.42 4.83 8.54 -92.71 -0.79 4.04 16 39 H 0.29 -2.89 8.06 -2.91 -0.02 -2.91 16 Total: -1.00 -92.57 360.42 -1.30 -93.87 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -1.63 Total: 5.52 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 7.63 Total: 11.62 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -8.05 Total: -103.97 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.11 Total: -43.26 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -92.57 -1.30 -93.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737535827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.137 kcal (2) G-P(sol) polarization free energy of solvation -92.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds