Wall clock time and date at job start Tue Mar 31 2020 19:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46910 * 269.99466 * 3 2 1 5 5 H 1.48500 * 109.47076 * 29.99662 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99903 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21622 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.47343 * 119.99911 * 179.97438 * 16 15 14 19 19 C 1.36299 * 122.54304 * 180.02562 * 18 16 15 20 20 S 1.71009 * 109.01855 * 179.97438 * 19 18 16 21 21 C 1.75973 * 90.63745 * 359.97438 * 20 19 18 22 22 C 1.47373 * 125.23751 * 179.97438 * 21 20 19 23 23 N 1.31610 * 125.85778 * 179.66523 * 22 21 20 24 24 C 1.33629 * 109.24646 * 179.86821 * 23 22 21 25 25 C 1.35006 * 108.41904 * 0.40093 * 24 23 22 26 26 N 1.36589 * 125.85905 * 359.97438 * 22 21 20 27 27 H 0.96996 * 126.50800 * 359.95197 * 26 22 21 28 28 N 1.29960 * 109.52581 * 359.76015 * 21 20 19 29 29 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 32 32 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 33 33 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 34 34 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 35 35 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 36 36 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 37 37 H 1.07997 * 125.49167 * 359.96893 * 19 18 16 38 38 H 1.07999 * 125.79389 * 180.12453 * 24 23 22 39 39 H 1.08001 * 126.47216 * 179.78888 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5111 -8.7421 0.3219 18 6 0.3609 -9.6424 0.2297 19 6 0.7544 -10.9434 0.3309 20 16 -0.6289 -11.9483 0.2972 21 6 -1.6728 -10.5395 0.1474 22 6 -3.1429 -10.5769 0.0519 23 7 -3.9354 -9.5315 -0.0542 24 6 -5.2042 -9.9455 -0.1200 25 6 -5.2176 -11.2934 -0.0448 26 7 -3.9172 -11.7020 0.0642 27 1 -3.6041 -12.6172 0.1361 28 7 -0.9480 -9.4608 0.1386 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6846 -3.7146 0.8906 32 1 2.6846 -3.7146 -0.8895 33 1 0.8668 -4.9036 -2.0127 34 1 2.5084 -6.2483 -0.7151 35 1 2.3911 -6.1471 1.0580 36 1 -0.0787 -7.0795 0.0541 37 1 1.7753 -11.2848 0.4183 38 1 -6.0722 -9.3095 -0.2127 39 1 -6.0905 -11.9290 -0.0670 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753922575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:23 Heat of formation + Delta-G solvation = 37.315205 kcal Electronic energy + Delta-G solvation = -24958.907820 eV Core-core repulsion = 21030.140149 eV Total energy + Delta-G solvation = -3928.767671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.43808 -40.66546 -38.87669 -37.48579 -34.38133 -33.93269 -33.10419 -32.11353 -31.25356 -29.39284 -29.19191 -26.60041 -25.21870 -23.62180 -22.30151 -22.20676 -21.35893 -20.95176 -19.67311 -19.49201 -18.19019 -17.26184 -17.08464 -16.13798 -16.05660 -15.86384 -15.75270 -15.09431 -14.98088 -14.65441 -14.42223 -14.20656 -14.02100 -13.86474 -13.63726 -13.49567 -12.95058 -12.61700 -12.52308 -12.26517 -11.79018 -10.92210 -10.78158 -10.71430 -10.59269 -10.52286 -10.45789 -10.40122 -10.29029 -10.13321 -9.83268 -9.75692 -9.45392 -9.09104 -8.85737 -8.55790 -6.88871 -5.71108 -3.00819 -0.26937 0.47126 0.93308 1.16263 1.90605 2.17440 2.77466 3.09000 3.19478 3.47280 3.51781 3.53934 3.54939 4.07482 4.47900 4.59238 4.71035 4.72284 4.82451 4.84181 4.94054 4.96323 5.28410 5.31059 5.50368 5.60339 5.68973 5.82438 6.01290 6.17239 6.24471 6.38756 6.56030 6.58502 6.73530 6.92372 7.48601 7.53952 7.72839 8.01557 8.10074 8.46909 9.58357 10.15549 10.51300 11.51258 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.002135 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.017055 B =13110.004548 C =14785.373395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.550 6.550 14 C 0.088 3.912 15 N -0.698 5.698 16 C 0.590 3.410 17 O -0.538 6.538 18 C 0.021 3.979 19 C -0.204 4.204 20 S 0.180 5.820 21 C 0.121 3.879 22 C 0.256 3.744 23 N -0.424 5.424 24 C -0.021 4.021 25 C -0.025 4.025 26 N -0.560 5.560 27 H 0.421 0.579 28 N -0.394 5.394 29 H 0.255 0.745 30 H 0.389 0.611 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.372 0.628 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.418 0.582 37 H 0.198 0.802 38 H 0.181 0.819 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -33.646 0.175 34.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.354 6.354 14 C -0.036 4.036 15 N -0.349 5.349 16 C 0.373 3.627 17 O -0.416 6.416 18 C -0.117 4.117 19 C -0.346 4.346 20 S 0.436 5.564 21 C -0.157 4.157 22 C -0.006 4.006 23 N -0.145 5.145 24 C -0.172 4.172 25 C -0.162 4.162 26 N -0.165 5.165 27 H 0.260 0.740 28 N -0.109 5.109 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.255 0.745 37 H 0.215 0.785 38 H 0.198 0.802 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.759 -33.259 0.651 34.159 hybrid contribution 0.691 0.338 -0.314 0.830 sum -7.069 -32.922 0.338 33.674 Atomic orbital electron populations 1.69680 1.05093 1.25655 1.57323 1.24770 0.95533 0.97719 1.02913 0.86177 0.78609 0.83809 0.77500 1.21712 1.21751 1.20776 1.19218 0.90980 0.84110 1.43126 0.91215 1.42246 1.06127 0.99380 1.89318 1.21197 0.93469 0.86583 0.98830 1.22409 0.94615 0.91588 0.88526 0.87583 1.86619 1.37337 1.96183 1.15268 1.22198 0.92155 0.85860 1.03384 1.45773 1.12293 1.04781 1.72019 1.17011 0.86473 0.82025 0.77211 1.90823 1.15199 1.84586 1.51011 1.20556 0.89287 0.93906 1.07904 1.26884 1.05730 0.95948 1.06076 1.83611 0.96469 1.10874 1.65441 1.23876 0.93441 0.90913 1.07434 1.19444 0.88616 0.82414 1.10149 1.70580 1.01445 1.27524 1.14930 1.22625 0.95097 0.92644 1.06834 1.23026 0.86286 0.97756 1.09111 1.43350 1.07121 1.09472 1.56595 0.74040 1.66782 1.03247 1.28896 1.11989 0.93472 0.77651 0.95364 0.95897 0.78112 0.90747 0.90100 0.74519 0.78466 0.80159 0.79445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.94 5.55 -59.91 -0.33 -19.28 16 10 C 0.13 2.57 5.90 -4.04 -0.02 2.54 16 11 C 0.09 1.46 3.09 -26.73 -0.08 1.38 16 12 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 13 O -0.55 -9.46 13.03 -35.23 -0.46 -9.92 16 14 C 0.09 1.25 5.34 -4.04 -0.02 1.23 16 15 N -0.70 -9.80 5.44 -61.41 -0.33 -10.14 16 16 C 0.59 8.47 7.80 -12.55 -0.10 8.37 16 17 O -0.54 -8.85 16.68 5.26 0.09 -8.76 16 18 C 0.02 0.25 6.68 -84.59 -0.56 -0.31 16 19 C -0.20 -1.83 10.63 30.03 0.32 -1.51 16 20 S 0.18 1.11 23.17 -107.50 -2.49 -1.38 16 21 C 0.12 1.23 7.47 -14.63 -0.11 1.12 16 22 C 0.26 2.52 8.05 -154.61 -1.25 1.27 16 23 N -0.42 -5.16 11.28 -11.30 -0.13 -5.29 16 24 C -0.02 -0.17 11.84 -17.92 -0.21 -0.38 16 25 C -0.03 -0.13 12.03 -16.51 -0.20 -0.32 16 26 N -0.56 -3.06 6.22 -10.62 -0.07 -3.13 16 27 H 0.42 0.83 8.96 -40.82 -0.37 0.47 16 28 N -0.39 -4.99 10.07 -8.01 -0.08 -5.07 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.39 10.90 7.67 -40.82 -0.31 10.59 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.37 5.31 9.05 45.56 0.41 5.72 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.42 5.97 7.83 -40.82 -0.32 5.65 16 37 H 0.20 1.47 8.01 -52.49 -0.42 1.05 16 38 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.19 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -38.19 364.15 -8.61 -46.80 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -3.51 Total: 15.29 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.48 Total: 5.78 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -0.22 Total: -71.15 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.37 Total: -18.68 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.19 -8.61 -46.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753922575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.115 kcal (2) G-P(sol) polarization free energy of solvation -38.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds