Wall clock time and date at job start Tue Mar 31 2020 19:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46910 * 269.99466 * 3 2 1 5 5 H 1.48500 * 109.47076 * 29.99662 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99903 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21622 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.47343 * 119.99911 * 179.97438 * 16 15 14 19 19 C 1.36299 * 122.54304 * 180.02562 * 18 16 15 20 20 S 1.71009 * 109.01855 * 179.97438 * 19 18 16 21 21 C 1.75973 * 90.63745 * 359.97438 * 20 19 18 22 22 C 1.47373 * 125.23751 * 179.97438 * 21 20 19 23 23 N 1.31610 * 125.85778 * 179.66523 * 22 21 20 24 24 C 1.33629 * 109.24646 * 179.86821 * 23 22 21 25 25 C 1.35006 * 108.41904 * 0.40093 * 24 23 22 26 26 N 1.36589 * 125.85905 * 359.97438 * 22 21 20 27 27 H 0.96996 * 126.50800 * 359.95197 * 26 22 21 28 28 N 1.29960 * 109.52581 * 359.76015 * 21 20 19 29 29 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 32 32 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 33 33 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 34 34 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 35 35 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 36 36 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 37 37 H 1.07997 * 125.49167 * 359.96893 * 19 18 16 38 38 H 1.07999 * 125.79389 * 180.12453 * 24 23 22 39 39 H 1.08001 * 126.47216 * 179.78888 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5111 -8.7421 0.3219 18 6 0.3609 -9.6424 0.2297 19 6 0.7544 -10.9434 0.3309 20 16 -0.6289 -11.9483 0.2972 21 6 -1.6728 -10.5395 0.1474 22 6 -3.1429 -10.5769 0.0519 23 7 -3.9354 -9.5315 -0.0542 24 6 -5.2042 -9.9455 -0.1200 25 6 -5.2176 -11.2934 -0.0448 26 7 -3.9172 -11.7020 0.0642 27 1 -3.6041 -12.6172 0.1361 28 7 -0.9480 -9.4608 0.1386 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6846 -3.7146 0.8906 32 1 2.6846 -3.7146 -0.8895 33 1 0.8668 -4.9036 -2.0127 34 1 2.5084 -6.2483 -0.7151 35 1 2.3911 -6.1471 1.0580 36 1 -0.0787 -7.0795 0.0541 37 1 1.7753 -11.2848 0.4183 38 1 -6.0722 -9.3095 -0.2127 39 1 -6.0905 -11.9290 -0.0670 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753922575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:23 Heat of formation + Delta-G solvation = 3.519401 kcal Electronic energy + Delta-G solvation = -24960.373316 eV Core-core repulsion = 21030.140149 eV Total energy + Delta-G solvation = -3930.233167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.97404 -41.56966 -39.89670 -38.85203 -36.10872 -35.36470 -33.67348 -33.22686 -32.76921 -30.76372 -29.97208 -27.80885 -26.46394 -24.94370 -23.72796 -22.78472 -22.75786 -21.75023 -20.55483 -20.11577 -19.24357 -18.84293 -18.26889 -17.30073 -17.25046 -16.79716 -16.64814 -16.42387 -16.00591 -15.94653 -15.48937 -15.13357 -15.00507 -14.94613 -14.77714 -14.52437 -14.23855 -14.18179 -13.83724 -13.27113 -13.20657 -12.96443 -12.75078 -12.16233 -12.00316 -11.81936 -11.52391 -11.31966 -11.14332 -11.09141 -11.04796 -10.99494 -10.91402 -10.49256 -10.18454 -9.12030 -9.02090 -7.94589 -5.24905 -0.93067 -0.13847 0.25976 0.40759 1.27614 1.47123 1.49809 1.58248 1.67847 2.05269 2.05924 2.33167 2.56181 2.95446 3.35149 3.37854 3.47326 3.56276 3.90714 4.00016 4.00831 4.12315 4.17936 4.37464 4.38214 4.51649 4.58724 4.60957 4.68936 4.92043 4.97000 5.18339 5.23946 5.47785 5.65861 6.08359 6.25952 6.29636 6.47467 6.78430 6.97558 7.00384 7.32607 8.07683 8.30902 9.28906 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.002135 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.017055 B =13110.004548 C =14785.373395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.125 3.875 11 C 0.106 3.894 12 H 0.095 0.905 13 O -0.564 6.564 14 C 0.101 3.899 15 N -0.698 5.698 16 C 0.589 3.411 17 O -0.566 6.566 18 C -0.010 4.010 19 C -0.209 4.209 20 S 0.304 5.696 21 C 0.093 3.907 22 C 0.227 3.773 23 N -0.482 5.482 24 C -0.060 4.060 25 C 0.013 3.987 26 N -0.542 5.542 27 H 0.439 0.561 28 N -0.434 5.434 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.385 0.615 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.416 0.584 37 H 0.212 0.788 38 H 0.190 0.810 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 -36.761 0.165 37.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.384 5.384 10 C -0.002 4.002 11 C 0.046 3.954 12 H 0.112 0.888 13 O -0.370 6.370 14 C -0.023 4.023 15 N -0.349 5.349 16 C 0.374 3.626 17 O -0.446 6.446 18 C -0.148 4.148 19 C -0.353 4.353 20 S 0.561 5.439 21 C -0.184 4.184 22 C -0.035 4.035 23 N -0.204 5.204 24 C -0.211 4.211 25 C -0.125 4.125 26 N -0.149 5.149 27 H 0.281 0.719 28 N -0.151 5.151 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.233 0.767 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.252 0.748 37 H 0.229 0.771 38 H 0.207 0.793 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.630 -36.447 0.636 37.243 hybrid contribution 0.580 1.080 -0.320 1.267 sum -7.050 -35.367 0.316 36.064 Atomic orbital electron populations 1.69852 1.06781 1.26144 1.59247 1.25662 0.96434 1.01394 1.03580 0.85074 0.77659 0.79133 0.77476 1.21299 1.22171 1.19231 1.19670 0.91582 0.85242 1.41523 0.90341 1.42452 1.05736 1.00863 1.89396 1.21390 0.94010 0.85434 0.99379 1.22114 0.93570 0.91614 0.88094 0.88761 1.86595 1.38203 1.96208 1.16025 1.21979 0.91780 0.84716 1.03869 1.45746 1.12021 1.04950 1.72139 1.17338 0.86632 0.82406 0.76231 1.90787 1.16303 1.85029 1.52485 1.20241 0.89154 0.94143 1.11242 1.27268 1.08005 0.95860 1.04143 1.83087 0.92300 1.06426 1.62106 1.24165 0.94129 0.92596 1.07496 1.19418 0.88714 0.83357 1.11989 1.70447 1.03494 1.29999 1.16464 1.23027 0.94395 0.94730 1.08917 1.23727 0.87037 0.97008 1.04711 1.43306 1.06866 1.09497 1.55205 0.71879 1.66714 1.03604 1.31183 1.13584 0.93977 0.79266 0.94517 0.94736 0.76654 0.89950 0.89799 0.74754 0.77102 0.79261 0.74598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.32 9.99 84.04 0.84 -13.48 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.74 -39.26 5.55 -343.45 -1.91 -41.17 16 10 C 0.13 5.02 5.90 86.38 0.51 5.53 16 11 C 0.11 3.57 3.09 30.60 0.09 3.66 16 12 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 13 O -0.56 -19.81 13.03 -148.98 -1.94 -21.75 16 14 C 0.10 2.88 5.34 86.38 0.46 3.35 16 15 N -0.70 -20.26 5.44 -466.44 -2.54 -22.80 16 16 C 0.59 17.31 7.80 86.64 0.68 17.98 16 17 O -0.57 -18.75 16.68 -4.10 -0.07 -18.82 16 18 C -0.01 -0.26 6.68 40.99 0.27 0.02 16 19 C -0.21 -3.47 10.63 67.37 0.72 -2.75 16 20 S 0.30 2.91 23.17 -56.49 -1.31 1.60 16 21 C 0.09 1.83 7.47 87.38 0.65 2.48 16 22 C 0.23 4.34 8.05 136.30 1.10 5.44 16 23 N -0.48 -12.10 11.28 -189.66 -2.14 -14.24 16 24 C -0.06 -0.96 11.84 83.68 0.99 0.03 16 25 C 0.01 0.09 12.03 83.18 1.00 1.09 16 26 N -0.54 -4.55 6.22 -187.52 -1.17 -5.72 16 27 H 0.44 0.12 8.96 -92.71 -0.83 -0.71 16 28 N -0.43 -11.33 10.07 -179.26 -1.81 -13.14 16 29 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.38 21.67 7.67 -92.71 -0.71 20.95 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.38 11.05 9.05 -74.06 -0.67 10.38 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.42 12.56 7.83 -92.71 -0.73 11.83 16 37 H 0.21 2.76 8.01 -2.91 -0.02 2.73 16 38 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.24 -0.84 8.06 -2.91 -0.02 -0.87 16 Total: -1.00 -86.23 364.15 -4.56 -90.79 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -1.78 Total: 38.22 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 7.78 Total: 19.15 kcal Atomic # 7 Polarization: -149.33 SS G_CDS: -9.27 Total: -158.60 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.01 Total: -40.57 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.31 Total: 1.60 kcal Total: -86.23 -4.56 -90.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753922575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.309 kcal (2) G-P(sol) polarization free energy of solvation -86.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds