Wall clock time and date at job start Tue Mar 31 2020 19:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47296 * 269.99854 * 3 2 1 5 5 H 1.48501 * 109.47407 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.47304 * 150.00105 * 3 2 1 7 7 C 1.38812 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21622 * 120.00315 * 0.02562 * 16 15 14 18 18 C 1.47346 * 119.99986 * 179.97438 * 16 15 14 19 19 C 1.36297 * 122.54356 * 180.02562 * 18 16 15 20 20 S 1.71011 * 109.01928 * 179.97438 * 19 18 16 21 21 C 1.75971 * 90.63375 * 0.02562 * 20 19 18 22 22 C 1.47383 * 125.23335 * 180.02562 * 21 20 19 23 23 N 1.31608 * 125.85649 * 179.66446 * 22 21 20 24 24 C 1.33631 * 109.24396 * 179.86518 * 23 22 21 25 25 C 1.35009 * 108.42200 * 0.39883 * 24 23 22 26 26 N 1.36586 * 125.85906 * 359.97424 * 22 21 20 27 27 H 0.97001 * 126.50651 * 359.95388 * 26 22 21 28 28 N 1.29958 * 109.53012 * 359.75507 * 21 20 19 29 29 H 0.97001 * 120.00199 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 32 32 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 33 33 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 34 34 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 35 35 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 36 36 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 37 37 H 1.08004 * 125.49339 * 359.97438 * 19 18 16 38 38 H 1.07995 * 125.78731 * 180.12155 * 24 23 22 39 39 H 1.07992 * 126.47070 * 179.79178 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6163 -2.1912 -0.0011 12 1 5.8797 -1.6196 0.8889 13 8 5.9616 -1.4419 -1.1679 14 6 6.3814 -3.5162 -0.0017 15 7 7.8172 -3.2512 0.1187 16 6 8.6922 -4.2761 0.1401 17 8 8.2899 -5.4210 0.0591 18 6 10.1363 -4.0095 0.2606 19 6 11.0661 -5.0057 0.2870 20 16 12.6222 -4.3119 0.4339 21 6 11.9221 -2.6975 0.4526 22 6 12.6846 -1.4413 0.5644 23 7 12.1746 -0.2281 0.5733 24 6 13.1624 0.6641 0.6912 25 6 14.3349 -0.0027 0.7501 26 7 14.0423 -1.3361 0.6705 27 1 14.6783 -2.0684 0.6868 28 7 10.6296 -2.7833 0.3468 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 3.8484 -3.0426 -0.8908 32 1 3.8491 -3.0422 0.8891 33 1 5.7548 -1.8907 -1.9991 34 1 6.0527 -4.1259 0.8399 35 1 6.1869 -4.0476 -0.9333 36 1 8.1381 -2.3381 0.1829 37 1 10.8543 -6.0629 0.2250 38 1 13.0435 1.7369 0.7280 39 1 15.3180 0.4343 0.8431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753922576.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:26 Heat of formation + Delta-G solvation = 40.809231 kcal Electronic energy + Delta-G solvation = -25045.219663 eV Core-core repulsion = 21116.603505 eV Total energy + Delta-G solvation = -3928.616158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49435 -40.72647 -38.95170 -37.63495 -34.51640 -34.06975 -33.15994 -32.16933 -31.42958 -29.61912 -29.38018 -26.78493 -25.36933 -23.60337 -22.29708 -22.03802 -21.45564 -21.00134 -19.75477 -19.54816 -18.26283 -17.65635 -17.30186 -16.22379 -16.09132 -15.95090 -15.81798 -15.19974 -15.02737 -14.70864 -14.50792 -14.23499 -14.10598 -13.83850 -13.68869 -13.64660 -13.17594 -12.65610 -12.57639 -12.33023 -11.94505 -11.24655 -10.81198 -10.77034 -10.76276 -10.59178 -10.53848 -10.45473 -10.36353 -10.10995 -9.88646 -9.70811 -9.50868 -9.16789 -8.87993 -8.61331 -7.20975 -5.73452 -3.09363 -0.32127 0.41998 0.88282 1.10615 1.84881 2.12076 2.71417 3.01635 3.13501 3.45517 3.48776 3.51398 3.52235 4.01523 4.42548 4.58704 4.64996 4.66465 4.69197 4.77423 4.79178 4.90752 5.19746 5.23124 5.44526 5.51341 5.55559 5.71803 5.84506 5.90176 6.11380 6.28632 6.46503 6.52968 6.60895 6.86292 7.40838 7.47386 7.86439 8.01488 8.03222 8.45210 9.25143 9.97248 10.17245 11.44573 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.002370 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.992604 B =11811.682106 C =13719.270838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.089 0.911 9 N -0.750 5.750 10 C 0.132 3.868 11 C 0.085 3.915 12 H 0.106 0.894 13 O -0.554 6.554 14 C 0.089 3.911 15 N -0.699 5.699 16 C 0.591 3.409 17 O -0.536 6.536 18 C 0.020 3.980 19 C -0.203 4.203 20 S 0.182 5.818 21 C 0.120 3.880 22 C 0.256 3.744 23 N -0.426 5.426 24 C -0.021 4.021 25 C -0.025 4.025 26 N -0.560 5.560 27 H 0.422 0.578 28 N -0.395 5.395 29 H 0.260 0.740 30 H 0.367 0.633 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.375 0.625 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.199 0.801 38 H 0.181 0.819 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.750 -7.525 1.313 38.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.025 3.975 12 H 0.123 0.877 13 O -0.359 6.359 14 C -0.035 4.035 15 N -0.350 5.350 16 C 0.373 3.627 17 O -0.414 6.414 18 C -0.117 4.117 19 C -0.346 4.346 20 S 0.438 5.562 21 C -0.158 4.158 22 C -0.006 4.006 23 N -0.146 5.146 24 C -0.173 4.173 25 C -0.161 4.161 26 N -0.165 5.165 27 H 0.260 0.740 28 N -0.110 5.110 29 H 0.070 0.930 30 H 0.201 0.799 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.223 0.777 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.253 0.747 37 H 0.216 0.784 38 H 0.198 0.802 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 37.189 -7.706 1.685 38.017 hybrid contribution 0.763 0.474 -0.328 0.957 sum 37.953 -7.232 1.357 38.659 Atomic orbital electron populations 1.69709 1.05144 1.25900 1.57425 1.24671 0.95255 0.97355 1.01820 0.86493 0.79180 0.84625 0.77928 1.20990 1.21838 1.20151 1.19043 0.80522 0.94758 1.43348 0.89272 1.42568 1.03924 1.02059 1.91034 1.21164 0.88477 0.90311 0.99730 1.22453 0.94566 0.90717 0.89786 0.87660 1.86580 1.85972 1.47538 1.15789 1.22181 0.79165 0.98720 1.03440 1.45774 1.06728 1.10250 1.72285 1.17005 0.83311 0.85159 0.77181 1.90831 1.78657 1.20975 1.50928 1.20542 0.96620 0.86502 1.08060 1.26896 0.95299 1.06452 1.05930 1.83630 1.07784 0.99402 1.65339 1.23874 0.91102 0.93325 1.07450 1.19440 0.79754 0.91354 1.10040 1.70569 1.31828 0.97058 1.15153 1.22618 0.87627 1.00212 1.06799 1.23030 1.01915 0.82022 1.09148 1.43351 1.07530 1.09099 1.56533 0.74006 1.66774 1.09580 1.22868 1.11801 0.93049 0.79946 0.94993 0.94486 0.77725 0.89916 0.90534 0.74662 0.78423 0.80181 0.79422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 23.01 27.73 -169.99 -4.71 18.30 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -6.83 6.52 56.52 0.37 -6.47 16 7 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.75 -18.26 5.30 -59.91 -0.32 -18.58 16 10 C 0.13 2.49 5.92 -4.04 -0.02 2.47 16 11 C 0.08 1.30 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 13 O -0.55 -8.77 13.03 -35.23 -0.46 -9.23 16 14 C 0.09 1.19 5.31 -4.04 -0.02 1.17 16 15 N -0.70 -9.28 5.50 -61.41 -0.34 -9.61 16 16 C 0.59 8.13 7.80 -12.55 -0.10 8.03 16 17 O -0.54 -8.53 16.68 5.26 0.09 -8.45 16 18 C 0.02 0.23 6.68 -84.59 -0.56 -0.33 16 19 C -0.20 -1.74 10.63 30.03 0.32 -1.42 16 20 S 0.18 1.05 23.17 -107.50 -2.49 -1.44 16 21 C 0.12 1.16 7.47 -14.62 -0.11 1.05 16 22 C 0.26 2.40 8.05 -154.62 -1.25 1.16 16 23 N -0.43 -4.95 11.28 -11.30 -0.13 -5.08 16 24 C -0.02 -0.16 11.84 -17.92 -0.21 -0.38 16 25 C -0.02 -0.11 12.03 -16.51 -0.20 -0.31 16 26 N -0.56 -2.85 6.22 -10.62 -0.07 -2.91 16 27 H 0.42 0.69 8.96 -40.82 -0.37 0.32 16 28 N -0.39 -4.78 10.07 -8.01 -0.08 -4.86 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.37 8.98 5.41 -40.82 -0.22 8.76 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.38 4.88 9.05 45.56 0.41 5.30 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.42 5.56 7.96 -40.82 -0.32 5.24 16 37 H 0.20 1.40 8.01 -52.48 -0.42 0.98 16 38 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.19 0.08 8.06 -52.49 -0.42 -0.35 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -38.90 361.04 -8.25 -47.15 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.47 Total: 13.02 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.49 Total: 5.38 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.15 Total: -70.18 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.37 Total: -17.67 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.30 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.90 -8.25 -47.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753922576.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.960 kcal (2) G-P(sol) polarization free energy of solvation -38.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds