Wall clock time and date at job start Tue Mar 31 2020 19:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47296 * 269.99854 * 3 2 1 5 5 H 1.48501 * 109.47407 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.47304 * 150.00105 * 3 2 1 7 7 C 1.38812 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21622 * 120.00315 * 0.02562 * 16 15 14 18 18 C 1.47346 * 119.99986 * 179.97438 * 16 15 14 19 19 C 1.36297 * 122.54356 * 180.02562 * 18 16 15 20 20 S 1.71011 * 109.01928 * 179.97438 * 19 18 16 21 21 C 1.75971 * 90.63375 * 0.02562 * 20 19 18 22 22 C 1.47383 * 125.23335 * 180.02562 * 21 20 19 23 23 N 1.31608 * 125.85649 * 179.66446 * 22 21 20 24 24 C 1.33631 * 109.24396 * 179.86518 * 23 22 21 25 25 C 1.35009 * 108.42200 * 0.39883 * 24 23 22 26 26 N 1.36586 * 125.85906 * 359.97424 * 22 21 20 27 27 H 0.97001 * 126.50651 * 359.95388 * 26 22 21 28 28 N 1.29958 * 109.53012 * 359.75507 * 21 20 19 29 29 H 0.97001 * 120.00199 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 32 32 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 33 33 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 34 34 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 35 35 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 36 36 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 37 37 H 1.08004 * 125.49339 * 359.97438 * 19 18 16 38 38 H 1.07995 * 125.78731 * 180.12155 * 24 23 22 39 39 H 1.07992 * 126.47070 * 179.79178 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6163 -2.1912 -0.0011 12 1 5.8797 -1.6196 0.8889 13 8 5.9616 -1.4419 -1.1679 14 6 6.3814 -3.5162 -0.0017 15 7 7.8172 -3.2512 0.1187 16 6 8.6922 -4.2761 0.1401 17 8 8.2899 -5.4210 0.0591 18 6 10.1363 -4.0095 0.2606 19 6 11.0661 -5.0057 0.2870 20 16 12.6222 -4.3119 0.4339 21 6 11.9221 -2.6975 0.4526 22 6 12.6846 -1.4413 0.5644 23 7 12.1746 -0.2281 0.5733 24 6 13.1624 0.6641 0.6912 25 6 14.3349 -0.0027 0.7501 26 7 14.0423 -1.3361 0.6705 27 1 14.6783 -2.0684 0.6868 28 7 10.6296 -2.7833 0.3468 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 3.8484 -3.0426 -0.8908 32 1 3.8491 -3.0422 0.8891 33 1 5.7548 -1.8907 -1.9991 34 1 6.0527 -4.1259 0.8399 35 1 6.1869 -4.0476 -0.9333 36 1 8.1381 -2.3381 0.1829 37 1 10.8543 -6.0629 0.2250 38 1 13.0435 1.7369 0.7280 39 1 15.3180 0.4343 0.8431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753922576.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:26 Heat of formation + Delta-G solvation = 6.091536 kcal Electronic energy + Delta-G solvation = -25046.725136 eV Core-core repulsion = 21116.603505 eV Total energy + Delta-G solvation = -3930.121631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.98249 -41.57670 -39.91262 -38.91158 -36.22095 -35.39823 -33.68010 -33.49411 -32.78922 -31.04226 -29.98139 -27.96441 -26.46518 -24.76114 -23.56585 -22.86774 -22.76721 -21.76731 -20.59872 -20.13044 -19.76659 -18.86759 -18.26618 -17.33185 -17.21571 -16.80459 -16.64414 -16.53370 -16.03365 -15.91913 -15.46031 -15.16847 -15.12164 -14.95658 -14.83600 -14.54338 -14.26609 -14.23749 -13.96603 -13.38824 -13.23780 -13.18574 -12.82432 -12.26182 -11.91081 -11.84712 -11.53977 -11.32697 -11.16207 -11.11113 -11.05563 -11.03673 -10.95143 -10.50091 -10.19212 -9.32617 -9.12865 -8.04554 -5.37959 -0.93771 -0.14555 0.25494 0.40045 1.26858 1.39681 1.41566 1.49166 1.66945 2.04069 2.05333 2.32302 2.47633 2.94053 3.26021 3.31354 3.37389 3.51866 3.89110 3.96505 3.99391 4.06481 4.11572 4.19047 4.36743 4.50603 4.57132 4.59833 4.69194 4.90643 4.96295 5.14222 5.23772 5.64962 5.72769 6.07036 6.19234 6.28360 6.46462 6.74766 6.96502 6.99695 7.06339 7.82073 8.00982 9.16662 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.002370 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.992604 B =11811.682106 C =13719.270838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.236 4.236 8 H 0.060 0.940 9 N -0.754 5.754 10 C 0.126 3.874 11 C 0.104 3.896 12 H 0.104 0.896 13 O -0.564 6.564 14 C 0.099 3.901 15 N -0.698 5.698 16 C 0.589 3.411 17 O -0.566 6.566 18 C -0.010 4.010 19 C -0.210 4.210 20 S 0.302 5.698 21 C 0.093 3.907 22 C 0.227 3.773 23 N -0.481 5.481 24 C -0.060 4.060 25 C 0.012 3.988 26 N -0.542 5.542 27 H 0.439 0.561 28 N -0.433 5.433 29 H 0.259 0.741 30 H 0.368 0.632 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.388 0.612 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.416 0.584 37 H 0.211 0.789 38 H 0.191 0.809 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 42.387 -7.613 1.439 43.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.367 4.367 8 H 0.078 0.922 9 N -0.400 5.400 10 C -0.001 4.001 11 C 0.044 3.956 12 H 0.121 0.879 13 O -0.371 6.371 14 C -0.025 4.025 15 N -0.348 5.348 16 C 0.374 3.626 17 O -0.446 6.446 18 C -0.147 4.147 19 C -0.354 4.354 20 S 0.559 5.441 21 C -0.184 4.184 22 C -0.034 4.034 23 N -0.203 5.203 24 C -0.210 4.210 25 C -0.126 4.126 26 N -0.149 5.149 27 H 0.281 0.719 28 N -0.149 5.149 29 H 0.068 0.932 30 H 0.202 0.798 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.237 0.763 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.253 0.747 37 H 0.228 0.772 38 H 0.208 0.792 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 41.903 -7.839 1.806 42.668 hybrid contribution -0.509 0.402 -0.369 0.746 sum 41.393 -7.437 1.437 42.081 Atomic orbital electron populations 1.69875 1.07019 1.26750 1.59576 1.25483 0.96123 1.01218 1.02561 0.85379 0.78379 0.79705 0.78099 1.20527 1.22024 1.18206 1.19052 0.82582 0.93601 1.41483 0.92227 1.42573 1.02427 1.04063 1.90936 1.21373 0.90504 0.88195 1.00012 1.22161 0.92106 0.91584 0.89779 0.87858 1.86556 1.85886 1.48181 1.16510 1.21991 0.79306 0.97367 1.03844 1.45731 1.06548 1.10313 1.72257 1.17331 0.84417 0.84609 0.76254 1.90797 1.79466 1.21830 1.52492 1.20239 0.95770 0.87477 1.11223 1.27267 0.97016 1.06893 1.04190 1.83126 1.03968 0.94886 1.62120 1.24161 0.91152 0.95603 1.07455 1.19411 0.81285 0.90827 1.11895 1.70439 1.34425 0.98799 1.16624 1.23027 0.88371 1.00845 1.08767 1.23726 1.02720 0.81241 1.04891 1.43316 1.06389 1.10070 1.55159 0.71906 1.66709 1.11400 1.23489 1.13343 0.93243 0.79818 0.94254 0.94123 0.76301 0.89751 0.89985 0.74705 0.77189 0.79202 0.74687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.33 13.97 21.65 0.30 -64.03 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 47.80 27.73 68.60 1.90 49.70 16 4 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 7 C -0.24 -13.87 10.47 84.03 0.88 -12.99 16 8 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 9 N -0.75 -36.37 5.30 -343.46 -1.82 -38.19 16 10 C 0.13 4.72 5.92 86.38 0.51 5.23 16 11 C 0.10 3.10 3.09 30.60 0.09 3.19 16 12 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 13 O -0.56 -17.30 13.03 -148.98 -1.94 -19.24 16 14 C 0.10 2.60 5.31 86.38 0.46 3.06 16 15 N -0.70 -18.63 5.50 -466.44 -2.56 -21.19 16 16 C 0.59 16.36 7.80 86.64 0.68 17.04 16 17 O -0.57 -18.10 16.68 -4.10 -0.07 -18.17 16 18 C -0.01 -0.22 6.68 41.00 0.27 0.05 16 19 C -0.21 -3.27 10.63 67.37 0.72 -2.56 16 20 S 0.30 2.61 23.17 -56.49 -1.31 1.30 16 21 C 0.09 1.70 7.47 87.38 0.65 2.36 16 22 C 0.23 4.03 8.05 136.30 1.10 5.13 16 23 N -0.48 -11.22 11.28 -189.66 -2.14 -13.36 16 24 C -0.06 -0.86 11.84 83.68 0.99 0.13 16 25 C 0.01 0.07 12.03 83.18 1.00 1.07 16 26 N -0.54 -3.96 6.22 -187.52 -1.17 -5.13 16 27 H 0.44 -0.27 8.96 -92.71 -0.83 -1.10 16 28 N -0.43 -10.54 10.07 -179.25 -1.80 -12.35 16 29 H 0.26 16.12 8.31 -92.71 -0.77 15.34 16 30 H 0.37 17.53 5.41 -92.71 -0.50 17.03 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.39 9.66 9.05 -74.06 -0.67 8.99 16 34 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.42 11.31 7.96 -92.71 -0.74 10.57 16 37 H 0.21 2.59 8.01 -2.91 -0.02 2.57 16 38 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.24 -1.06 8.06 -2.91 -0.02 -1.09 16 Total: -1.00 -87.73 361.04 -4.43 -92.16 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -1.64 Total: 30.12 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.82 Total: 18.39 kcal Atomic # 7 Polarization: -145.06 SS G_CDS: -9.19 Total: -154.26 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -2.01 Total: -37.41 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.90 Total: 49.70 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.31 Total: 1.30 kcal Total: -87.73 -4.43 -92.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753922576.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.254 kcal (2) G-P(sol) polarization free energy of solvation -87.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds