Wall clock time and date at job start Tue Mar 31 2020 20:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 120.00043 * 2 1 4 4 O 1.21359 * 119.99997 * 174.46083 * 3 2 1 5 5 C 1.49349 * 119.99912 * 354.46599 * 3 2 1 6 6 O 1.21383 * 119.99789 * 354.35869 * 5 3 2 7 7 N 1.34777 * 119.99955 * 174.08091 * 5 3 2 8 8 C 1.39767 * 119.99720 * 174.87672 * 7 5 3 9 9 C 1.38923 * 120.06354 * 324.77921 * 8 7 5 10 10 C 1.38087 * 119.93655 * 179.79239 * 9 8 7 11 11 C 1.38396 * 120.06191 * 0.49051 * 10 9 8 12 12 Cl 1.73600 * 119.94000 * 179.72326 * 11 10 9 13 13 C 1.38400 * 120.12718 * 359.73797 * 11 10 9 14 14 C 1.38090 * 120.06141 * 0.02873 * 13 11 10 15 15 C 1.46494 * 120.00243 * 180.02562 * 2 1 3 16 16 C 1.53942 * 113.74336 * 38.73844 * 15 2 1 17 17 N 1.47809 * 86.04146 * 222.08621 * 16 15 2 18 18 C 1.36938 * 134.46205 * 204.64670 * 17 16 15 19 19 H 1.07996 * 120.00302 * 179.86956 * 18 17 16 20 20 C 1.38815 * 119.99348 * 359.86136 * 18 17 16 21 21 N 1.31620 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99744 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46820 * 59.99947 * 22 20 18 24 24 H 1.48494 * 109.46793 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 300.00331 * 22 20 18 26 26 C 1.47580 * 91.05178 * 24.54848 * 17 16 15 27 27 H 1.08998 * 109.47313 * 85.91361 * 1 2 3 28 28 H 1.09004 * 109.47241 * 205.91508 * 1 2 3 29 29 H 1.09000 * 109.47223 * 325.90890 * 1 2 3 30 30 H 0.96998 * 120.00098 * 354.87407 * 7 5 3 31 31 H 1.08005 * 120.03375 * 0.02760 * 9 8 7 32 32 H 1.08001 * 119.96834 * 180.23470 * 10 9 8 33 33 H 1.07998 * 119.97166 * 179.97438 * 13 11 10 34 34 H 1.08000 * 120.03144 * 179.97438 * 14 13 11 35 35 H 1.09000 * 112.94730 * 170.33105 * 15 2 1 36 36 H 1.09004 * 113.76807 * 336.35465 * 16 15 2 37 37 H 1.09008 * 113.77364 * 107.74656 * 16 15 2 38 38 H 0.97004 * 119.99780 * 180.02562 * 21 20 18 39 39 H 1.08999 * 113.77167 * 221.15794 * 26 17 16 40 40 H 1.09000 * 113.77360 * 89.75345 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3482 1.1697 0.1014 5 6 1.3973 2.4576 -0.1247 6 8 0.2008 2.4527 -0.3287 7 7 2.0558 3.6275 -0.0052 8 6 1.3845 4.8331 -0.2277 9 6 0.3957 4.9098 -1.2005 10 6 -0.2688 6.1011 -1.4152 11 6 0.0565 7.2206 -0.6693 12 17 -0.7760 8.7185 -0.9468 13 6 1.0444 7.1483 0.2972 14 6 1.7089 5.9584 0.5196 15 6 2.1975 -1.2686 -0.0006 16 6 1.5556 -2.3546 -0.8828 17 7 1.8611 -3.2880 0.2218 18 6 2.0639 -4.6396 0.3071 19 1 2.2809 -5.0938 1.2626 20 6 1.9906 -5.4257 -0.8346 21 7 1.7266 -4.8720 -1.9991 22 14 2.2667 -7.2696 -0.7182 23 1 1.2562 -7.8648 0.1928 24 1 2.1355 -7.8758 -2.0674 25 1 3.6283 -7.5337 -0.1875 26 6 1.8621 -2.1786 1.1951 27 1 -0.3634 0.0732 -1.0250 28 1 -0.3634 -0.9243 0.4491 29 1 -0.3634 0.8511 0.5760 30 1 2.9955 3.6328 0.2352 31 1 0.1443 4.0376 -1.7858 32 1 -1.0402 6.1603 -2.1688 33 1 1.2965 8.0235 0.8775 34 1 2.4800 5.9026 1.2737 35 1 3.2669 -1.1418 -0.1691 36 1 0.4887 -2.2089 -1.0526 37 1 2.1091 -2.5603 -1.7991 38 1 1.6749 -5.4215 -2.7968 39 1 2.6600 -2.2439 1.9349 40 1 0.8855 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754578142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:29 Heat of formation + Delta-G solvation = 31.800552 kcal Electronic energy + Delta-G solvation = -25781.680224 eV Core-core repulsion = 21818.336962 eV Total energy + Delta-G solvation = -3963.343262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31843 -39.83393 -38.63519 -37.65677 -36.86679 -35.40586 -34.20584 -32.02041 -31.50628 -29.94378 -27.92197 -26.89188 -25.43831 -24.92725 -23.60859 -23.12303 -21.89160 -20.33852 -18.93145 -18.31690 -17.62731 -17.27708 -16.89731 -16.47001 -16.30126 -15.72413 -15.30306 -14.88364 -14.68557 -14.29879 -14.07910 -13.91819 -13.88596 -13.71631 -13.04191 -12.80843 -12.53680 -12.36477 -12.14362 -11.96122 -11.89552 -11.65470 -11.41766 -11.32227 -11.19010 -10.93811 -10.77751 -10.55477 -10.35440 -10.14855 -9.64420 -9.54107 -9.35671 -8.87256 -8.53217 -8.35205 -6.99986 -5.85452 -3.18946 0.55556 0.88268 1.40619 1.77809 2.17181 3.02173 3.30843 3.34646 3.37780 3.41282 3.42581 4.15660 4.38378 4.41177 4.45934 4.81698 4.93970 5.03205 5.07549 5.34968 5.39701 5.45916 5.48555 5.54910 5.75648 5.80815 5.84404 5.86531 5.90968 5.97605 6.13590 6.31783 6.40314 6.45116 6.55571 6.74883 7.08031 7.14070 7.35255 7.45610 7.53905 7.87474 7.96010 8.95078 9.61395 10.46217 11.31647 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.039951 B = 0.001921 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.690834 B =14573.535934 C =14914.804885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.560 5.560 3 C 0.502 3.498 4 O -0.526 6.526 5 C 0.510 3.490 6 O -0.491 6.491 7 N -0.651 5.651 8 C 0.154 3.846 9 C -0.107 4.107 10 C -0.088 4.088 11 C -0.051 4.051 12 Cl -0.073 7.073 13 C -0.090 4.090 14 C -0.130 4.130 15 C 0.084 3.916 16 C 0.158 3.842 17 N -0.605 5.605 18 C -0.226 4.226 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.916 3.084 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.111 3.889 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.424 0.576 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.256 0.744 39 H 0.050 0.950 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 25.513 3.298 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.292 5.292 3 C 0.283 3.717 4 O -0.404 6.404 5 C 0.293 3.707 6 O -0.364 6.364 7 N -0.298 5.298 8 C 0.060 3.940 9 C -0.128 4.128 10 C -0.107 4.107 11 C -0.078 4.078 12 Cl -0.044 7.044 13 C -0.109 4.109 14 C -0.150 4.150 15 C -0.019 4.019 16 C 0.032 3.968 17 N -0.331 5.331 18 C -0.353 4.353 19 H 0.100 0.900 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.746 3.254 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.016 4.016 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.263 0.737 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.957 25.166 3.032 25.520 hybrid contribution 0.294 -0.904 0.099 0.956 sum -2.663 24.262 3.130 24.607 Atomic orbital electron populations 1.22184 0.77962 1.03596 1.03150 1.48032 1.08268 1.05287 1.67645 1.19742 0.87469 0.84667 0.79811 1.90763 1.13355 1.86869 1.49392 1.20648 0.87419 0.85377 0.77301 1.90764 1.13984 1.87063 1.44571 1.43262 1.15145 1.03383 1.68033 1.17810 0.95574 0.85459 0.95173 1.21147 0.96414 0.98367 0.96822 1.20954 0.99841 0.90685 0.99266 1.20930 0.98218 0.88058 1.00610 1.98373 1.77665 1.32578 1.95785 1.20836 0.94801 0.98231 0.97062 1.20900 1.02424 0.91749 0.99975 1.24375 0.98129 0.78979 1.00409 1.22692 0.97186 0.83026 0.93871 1.45684 1.81976 1.02231 1.03244 1.18943 1.41910 0.80055 0.94383 0.89966 1.24821 1.01714 0.98390 0.95333 1.69795 1.54256 1.34554 0.98073 0.86146 0.78130 0.84426 0.76723 1.21079 1.21483 1.20944 1.22964 0.98370 0.86999 0.93308 0.91728 0.90508 0.89576 0.73702 0.83792 0.84402 0.84417 0.84393 0.86259 0.94639 0.90228 0.93386 0.93162 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 7.93 59.84 0.47 1.51 16 2 N -0.56 -8.96 3.09 -176.29 -0.55 -9.50 16 3 C 0.50 7.57 7.72 -11.63 -0.09 7.48 16 4 O -0.53 -8.87 16.01 5.49 0.09 -8.79 16 5 C 0.51 6.44 7.42 -11.63 -0.09 6.36 16 6 O -0.49 -6.66 11.19 5.47 0.06 -6.60 16 7 N -0.65 -6.52 5.31 -10.29 -0.05 -6.57 16 8 C 0.15 1.46 6.24 -83.73 -0.52 0.94 16 9 C -0.11 -1.06 8.65 -39.38 -0.34 -1.40 16 10 C -0.09 -0.76 9.82 -39.58 -0.39 -1.15 16 11 C -0.05 -0.42 6.32 -39.46 -0.25 -0.67 16 12 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.08 16 13 C -0.09 -0.66 9.82 -39.58 -0.39 -1.04 16 14 C -0.13 -0.97 9.97 -39.38 -0.39 -1.36 16 15 C 0.08 1.60 4.38 -70.14 -0.31 1.29 16 16 C 0.16 3.60 6.94 -2.84 -0.02 3.58 16 17 N -0.60 -15.12 3.70 -177.86 -0.66 -15.78 16 18 C -0.23 -6.19 10.70 -15.06 -0.16 -6.35 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -26.72 11.39 55.49 0.63 -26.09 16 22 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.11 2.21 8.44 -2.96 -0.02 2.19 16 27 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 28 H 0.08 1.12 6.20 -51.93 -0.32 0.79 16 29 H 0.09 1.12 5.86 -51.93 -0.30 0.82 16 30 H 0.42 3.57 8.33 -40.82 -0.34 3.23 16 31 H 0.14 1.54 6.56 -52.48 -0.34 1.20 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 2.40 7.26 -51.93 -0.38 2.02 16 36 H 0.04 0.80 6.74 -51.93 -0.35 0.45 16 37 H 0.08 2.03 7.16 -51.92 -0.37 1.66 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -31.17 351.97 -8.72 -39.88 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.43 Total: 2.40 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -2.59 Total: 11.10 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.63 Total: -57.94 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.15 Total: -15.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.17 -8.72 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754578142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.685 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds