Wall clock time and date at job start Tue Mar 31 2020 20:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 120.00043 * 2 1 4 4 O 1.21359 * 119.99997 * 174.46083 * 3 2 1 5 5 C 1.49349 * 119.99912 * 354.46599 * 3 2 1 6 6 O 1.21383 * 119.99789 * 354.35869 * 5 3 2 7 7 N 1.34777 * 119.99955 * 174.08091 * 5 3 2 8 8 C 1.39767 * 119.99720 * 174.87672 * 7 5 3 9 9 C 1.38923 * 120.06354 * 324.77921 * 8 7 5 10 10 C 1.38087 * 119.93655 * 179.79239 * 9 8 7 11 11 C 1.38396 * 120.06191 * 0.49051 * 10 9 8 12 12 Cl 1.73600 * 119.94000 * 179.72326 * 11 10 9 13 13 C 1.38400 * 120.12718 * 359.73797 * 11 10 9 14 14 C 1.38090 * 120.06141 * 0.02873 * 13 11 10 15 15 C 1.46494 * 120.00243 * 180.02562 * 2 1 3 16 16 C 1.53942 * 113.74336 * 38.73844 * 15 2 1 17 17 N 1.47809 * 86.04146 * 222.08621 * 16 15 2 18 18 C 1.36938 * 134.46205 * 204.64670 * 17 16 15 19 19 H 1.07996 * 120.00302 * 179.86956 * 18 17 16 20 20 C 1.38815 * 119.99348 * 359.86136 * 18 17 16 21 21 N 1.31620 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99744 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46820 * 59.99947 * 22 20 18 24 24 H 1.48494 * 109.46793 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 300.00331 * 22 20 18 26 26 C 1.47580 * 91.05178 * 24.54848 * 17 16 15 27 27 H 1.08998 * 109.47313 * 85.91361 * 1 2 3 28 28 H 1.09004 * 109.47241 * 205.91508 * 1 2 3 29 29 H 1.09000 * 109.47223 * 325.90890 * 1 2 3 30 30 H 0.96998 * 120.00098 * 354.87407 * 7 5 3 31 31 H 1.08005 * 120.03375 * 0.02760 * 9 8 7 32 32 H 1.08001 * 119.96834 * 180.23470 * 10 9 8 33 33 H 1.07998 * 119.97166 * 179.97438 * 13 11 10 34 34 H 1.08000 * 120.03144 * 179.97438 * 14 13 11 35 35 H 1.09000 * 112.94730 * 170.33105 * 15 2 1 36 36 H 1.09004 * 113.76807 * 336.35465 * 16 15 2 37 37 H 1.09008 * 113.77364 * 107.74656 * 16 15 2 38 38 H 0.97004 * 119.99780 * 180.02562 * 21 20 18 39 39 H 1.08999 * 113.77167 * 221.15794 * 26 17 16 40 40 H 1.09000 * 113.77360 * 89.75345 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3482 1.1697 0.1014 5 6 1.3973 2.4576 -0.1247 6 8 0.2008 2.4527 -0.3287 7 7 2.0558 3.6275 -0.0052 8 6 1.3845 4.8331 -0.2277 9 6 0.3957 4.9098 -1.2005 10 6 -0.2688 6.1011 -1.4152 11 6 0.0565 7.2206 -0.6693 12 17 -0.7760 8.7185 -0.9468 13 6 1.0444 7.1483 0.2972 14 6 1.7089 5.9584 0.5196 15 6 2.1975 -1.2686 -0.0006 16 6 1.5556 -2.3546 -0.8828 17 7 1.8611 -3.2880 0.2218 18 6 2.0639 -4.6396 0.3071 19 1 2.2809 -5.0938 1.2626 20 6 1.9906 -5.4257 -0.8346 21 7 1.7266 -4.8720 -1.9991 22 14 2.2667 -7.2696 -0.7182 23 1 1.2562 -7.8648 0.1928 24 1 2.1355 -7.8758 -2.0674 25 1 3.6283 -7.5337 -0.1875 26 6 1.8621 -2.1786 1.1951 27 1 -0.3634 0.0732 -1.0250 28 1 -0.3634 -0.9243 0.4491 29 1 -0.3634 0.8511 0.5760 30 1 2.9955 3.6328 0.2352 31 1 0.1443 4.0376 -1.7858 32 1 -1.0402 6.1603 -2.1688 33 1 1.2965 8.0235 0.8775 34 1 2.4800 5.9026 1.2737 35 1 3.2669 -1.1418 -0.1691 36 1 0.4887 -2.2089 -1.0526 37 1 2.1091 -2.5603 -1.7991 38 1 1.6749 -5.4215 -2.7968 39 1 2.6600 -2.2439 1.9349 40 1 0.8855 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754578142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:29 Heat of formation + Delta-G solvation = 12.356761 kcal Electronic energy + Delta-G solvation = -25782.523370 eV Core-core repulsion = 21818.336962 eV Total energy + Delta-G solvation = -3964.186408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34572 -40.92004 -39.73329 -39.02988 -37.55072 -36.46392 -35.43246 -33.97861 -32.13572 -30.71140 -29.74526 -28.11793 -26.75736 -26.66626 -24.73216 -24.08162 -22.96173 -21.46295 -20.42676 -19.31465 -18.85820 -18.60236 -18.18692 -17.51136 -17.36225 -16.97682 -16.72941 -16.16852 -15.78724 -15.56722 -15.29084 -15.14142 -14.63912 -14.54678 -14.36888 -13.98730 -13.71160 -13.67080 -13.34040 -13.21921 -13.18666 -12.95303 -12.82218 -12.60763 -12.53767 -12.46808 -12.12740 -12.00973 -11.82815 -11.57493 -11.30225 -10.88463 -10.58659 -10.07950 -9.78748 -9.21031 -8.98680 -7.93977 -5.28599 -0.23707 0.25933 0.41228 1.04997 1.19745 1.46881 1.50150 1.56201 1.94251 2.25536 2.49348 2.60725 3.09670 3.25080 3.40037 3.72352 3.77536 3.87023 4.14918 4.18666 4.28485 4.29334 4.33513 4.39910 4.64588 4.70461 4.81365 4.82648 4.94669 4.96275 5.06093 5.12952 5.17978 5.21681 5.24353 5.43267 5.48714 5.71310 5.85764 5.88815 6.14160 6.53031 6.76427 6.87070 7.55958 8.47622 9.22847 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.039951 B = 0.001921 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.690834 B =14573.535934 C =14914.804885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.565 5.565 3 C 0.504 3.496 4 O -0.544 6.544 5 C 0.518 3.482 6 O -0.502 6.502 7 N -0.635 5.635 8 C 0.135 3.865 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.056 4.056 12 Cl -0.070 7.070 13 C -0.088 4.088 14 C -0.119 4.119 15 C 0.112 3.888 16 C 0.160 3.840 17 N -0.635 5.635 18 C -0.236 4.236 19 H 0.088 0.912 20 C -0.065 4.065 21 N -0.953 5.953 22 Si 0.982 3.018 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.117 3.883 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.433 0.567 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.109 0.891 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.250 0.750 39 H 0.060 0.940 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 27.260 4.839 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.297 5.297 3 C 0.287 3.713 4 O -0.422 6.422 5 C 0.300 3.700 6 O -0.376 6.376 7 N -0.283 5.283 8 C 0.042 3.958 9 C -0.141 4.141 10 C -0.113 4.113 11 C -0.083 4.083 12 Cl -0.041 7.041 13 C -0.107 4.107 14 C -0.139 4.139 15 C 0.008 3.992 16 C 0.034 3.966 17 N -0.362 5.362 18 C -0.364 4.364 19 H 0.106 0.894 20 C -0.258 4.258 21 N -0.601 5.601 22 Si 0.810 3.190 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.009 4.009 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.273 0.727 31 H 0.148 0.852 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.893 26.980 4.607 27.523 hybrid contribution 0.271 -1.264 -0.360 1.342 sum -2.622 25.716 4.247 26.196 Atomic orbital electron populations 1.22225 0.76627 1.03967 1.03437 1.47905 1.08911 1.04625 1.68261 1.20121 0.87288 0.85240 0.78673 1.90753 1.14285 1.87306 1.49852 1.20020 0.87039 0.85099 0.77855 1.90767 1.14215 1.87042 1.45576 1.43088 1.15443 1.02834 1.66912 1.17974 0.96139 0.85598 0.96123 1.21117 0.97178 0.98435 0.97361 1.21051 1.00055 0.90532 0.99702 1.21095 0.98435 0.88025 1.00725 1.98377 1.77660 1.32244 1.95792 1.21149 0.93960 0.98965 0.96605 1.21166 1.02375 0.90763 0.99614 1.23642 0.97292 0.79867 0.98448 1.22549 0.96911 0.84398 0.92770 1.45999 1.82296 1.02479 1.05451 1.19350 1.40834 0.81599 0.94630 0.89392 1.25671 1.02321 1.02720 0.95117 1.69985 1.55919 1.35708 0.98492 0.85102 0.78324 0.79254 0.76331 1.20158 1.22091 1.20150 1.23075 0.99575 0.85133 0.93143 0.91736 0.90950 0.88058 0.72729 0.85158 0.83565 0.82053 0.81754 0.87332 0.94551 0.93738 0.94081 0.92171 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 7.93 127.77 1.01 3.17 16 2 N -0.57 -17.69 3.09 -830.01 -2.57 -20.26 16 3 C 0.50 14.73 7.72 87.24 0.67 15.41 16 4 O -0.54 -17.86 16.01 -3.28 -0.05 -17.92 16 5 C 0.52 12.45 7.42 87.24 0.65 13.10 16 6 O -0.50 -13.07 11.19 -3.35 -0.04 -13.11 16 7 N -0.64 -11.65 5.31 -304.81 -1.62 -13.26 16 8 C 0.14 2.31 6.24 38.20 0.24 2.55 16 9 C -0.12 -2.27 8.65 22.40 0.19 -2.07 16 10 C -0.09 -1.52 9.82 22.27 0.22 -1.30 16 11 C -0.06 -0.81 6.32 22.35 0.14 -0.67 16 12 Cl -0.07 -0.97 28.95 -2.72 -0.08 -1.05 16 13 C -0.09 -1.02 9.82 22.27 0.22 -0.80 16 14 C -0.12 -1.43 9.97 22.40 0.22 -1.20 16 15 C 0.11 4.25 4.38 46.75 0.20 4.45 16 16 C 0.16 7.45 6.94 86.44 0.60 8.05 16 17 N -0.64 -32.02 3.70 -716.62 -2.65 -34.68 16 18 C -0.24 -13.04 10.70 84.03 0.90 -12.14 16 19 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 20 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 21 N -0.95 -56.82 11.39 21.65 0.25 -56.58 16 22 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.12 4.57 8.44 86.49 0.73 5.30 16 27 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 28 H 0.07 2.03 6.20 -2.39 -0.01 2.02 16 29 H 0.10 2.49 5.86 -2.39 -0.01 2.47 16 30 H 0.43 6.44 8.33 -92.71 -0.77 5.66 16 31 H 0.13 2.78 6.56 -2.91 -0.02 2.76 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.11 4.41 7.26 -2.39 -0.02 4.39 16 36 H 0.04 1.68 6.74 -2.39 -0.02 1.66 16 37 H 0.04 2.37 7.16 -2.38 -0.02 2.35 16 38 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.09 6.90 -2.39 -0.02 2.08 16 Total: -1.00 -67.23 351.97 2.07 -65.16 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.33 Total: 13.92 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 6.47 Total: 30.64 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -6.59 Total: -124.78 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.09 Total: -31.03 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -67.23 2.07 -65.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754578142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.517 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds