Wall clock time and date at job start Tue Mar 31 2020 20:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.41151 * 2 1 4 4 C 1.54218 * 109.44051 * 119.91327 * 2 1 3 5 5 C 1.45742 * 112.99962 * 199.56413 * 4 2 1 6 6 S 1.81923 * 113.30153 * 294.35432 * 5 4 2 7 7 O 1.42103 * 108.54169 * 189.97116 * 6 5 4 8 8 O 1.42097 * 108.54684 * 320.91113 * 6 5 4 9 9 C 1.79953 * 102.16904 * 75.42075 * 6 5 4 10 10 C 1.53724 * 110.87163 * 275.57093 * 9 6 5 11 11 N 1.44743 * 109.44158 * 240.09165 * 2 1 3 12 12 C 1.34779 * 119.59118 * 322.26963 * 11 2 1 13 13 O 1.21558 * 119.99697 * 354.07986 * 12 11 2 14 14 C 1.47884 * 120.00732 * 174.08916 * 12 11 2 15 15 C 1.39919 * 120.01984 * 332.17616 * 14 12 11 16 16 C 1.38331 * 120.35714 * 179.74696 * 15 14 12 17 17 C 1.37748 * 120.40951 * 0.55563 * 16 15 14 18 18 C 1.40746 * 120.04368 * 359.70057 * 17 16 15 19 19 C 1.41435 * 120.18186 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00074 * 29.08597 * 19 18 17 21 21 C 1.39938 * 120.00169 * 209.09410 * 19 18 17 22 22 N 1.30825 * 119.99961 * 11.89054 * 21 19 18 23 23 Si 1.86800 * 120.00279 * 191.89096 * 21 19 18 24 24 H 1.48506 * 109.46946 * 59.99749 * 23 21 19 25 25 H 1.48498 * 109.47185 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46897 * 300.00326 * 23 21 19 27 27 C 1.38989 * 120.03180 * 152.45406 * 14 12 11 28 28 H 1.08996 * 109.47241 * 312.49810 * 1 2 3 29 29 H 1.09000 * 109.46908 * 72.49819 * 1 2 3 30 30 H 1.08998 * 109.47327 * 192.49230 * 1 2 3 31 31 H 1.09008 * 108.77429 * 78.66264 * 4 2 1 32 32 H 1.08997 * 108.77587 * 320.48002 * 4 2 1 33 33 H 1.08999 * 108.71533 * 55.34432 * 5 4 2 34 34 H 1.09005 * 108.71167 * 173.36918 * 5 4 2 35 35 H 1.09006 * 109.19360 * 35.93342 * 9 6 5 36 36 H 1.08994 * 109.19913 * 155.20625 * 9 6 5 37 37 H 1.09002 * 108.34006 * 164.59430 * 10 9 6 38 38 H 1.09000 * 108.34037 * 281.81590 * 10 9 6 39 39 H 1.08001 * 119.82183 * 0.02562 * 15 14 12 40 40 H 1.08000 * 119.79228 * 180.26114 * 16 15 14 41 41 H 1.08001 * 119.98069 * 179.72502 * 17 16 15 42 42 H 0.97001 * 120.00405 * 180.02562 * 22 21 19 43 43 H 1.08011 * 120.19832 * 359.95610 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0433 -0.7252 1.2605 5 6 3.4249 -0.3938 1.5853 6 16 4.6158 -0.9703 0.3367 7 8 5.9288 -0.8061 0.8549 8 8 4.2063 -2.2517 -0.1208 9 6 4.3736 0.2159 -0.9947 10 6 3.1980 -0.2016 -1.8929 11 7 2.0118 -0.6806 -1.1831 12 6 1.3592 -1.7690 -1.6370 13 8 0.4389 -2.2372 -0.9956 14 6 1.7628 -2.3938 -2.9151 15 6 2.3590 -1.6186 -3.9158 16 6 2.7440 -2.1969 -5.1120 17 6 2.5348 -3.5398 -5.3364 18 6 1.9317 -4.3346 -4.3437 19 6 1.7160 -5.7138 -4.5708 20 1 2.3758 -6.2628 -5.2263 21 6 0.6476 -6.3671 -3.9463 22 7 -0.2828 -5.6715 -3.3447 23 14 0.5499 -8.2324 -3.9717 24 1 1.7529 -8.8001 -3.3115 25 1 -0.6677 -8.6742 -3.2455 26 1 0.4873 -8.7056 -5.3779 27 6 1.5451 -3.7504 -3.1256 28 1 -0.3633 0.6942 0.7577 29 1 -0.3633 0.3091 -0.9801 30 1 -0.3634 -1.0033 0.2223 31 1 1.9687 -1.8010 1.1012 32 1 1.4094 -0.4531 2.1044 33 1 3.5122 0.6887 1.6786 34 1 3.6769 -0.8464 2.5444 35 1 4.1674 1.1972 -0.5673 36 1 5.2815 0.2711 -1.5951 37 1 2.9104 0.6555 -2.5019 38 1 3.5396 -0.9941 -2.5587 39 1 2.5235 -0.5639 -3.7517 40 1 3.2071 -1.5908 -5.8765 41 1 2.8341 -3.9832 -6.2746 42 1 -1.0232 -6.1243 -2.9114 43 1 1.0818 -4.3518 -2.3573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357159625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:41 Heat of formation + Delta-G solvation = -55.571427 kcal Electronic energy + Delta-G solvation = -28563.417334 eV Core-core repulsion = 24701.869389 eV Total energy + Delta-G solvation = -3861.547945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34613 -37.49754 -36.95332 -36.21692 -35.94555 -34.64498 -33.49008 -31.63909 -30.48925 -29.53806 -28.94068 -25.55968 -24.36963 -23.92428 -23.06833 -21.03973 -20.82200 -18.88206 -18.57048 -17.58417 -17.12627 -16.75218 -16.08952 -15.89405 -15.39775 -15.26604 -14.86574 -14.66862 -14.38562 -13.96784 -13.88904 -13.27999 -13.27301 -13.04798 -12.70179 -12.59249 -12.44814 -12.22772 -12.02273 -11.94601 -11.77564 -11.62917 -11.54580 -11.50924 -11.10602 -11.09411 -10.85666 -10.81213 -10.64520 -10.31885 -10.30332 -9.87464 -9.64251 -9.20034 -8.74297 -8.50724 -7.58499 -7.41997 -6.71148 -4.38949 -0.04475 2.25753 2.63157 2.83793 3.10895 3.12798 3.17443 3.17708 3.60989 3.73077 3.84034 3.96647 4.30293 4.41184 4.53474 4.67254 4.74808 4.93340 5.02555 5.15745 5.23455 5.41402 5.48326 5.60472 5.64245 5.73820 5.76639 5.87672 5.97923 6.09517 6.18062 6.28111 6.49796 6.70950 6.93538 7.02256 7.04244 7.24564 7.41475 7.60327 7.74270 7.86308 8.00756 8.20389 8.53277 8.82600 8.85622 8.88612 10.23199 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.004076 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.618394 B = 6867.201569 C = 7013.162760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.082 0.918 4 C -0.126 4.126 5 C -0.596 4.596 6 S 2.418 3.582 7 O -0.951 6.951 8 O -0.909 6.909 9 C -0.636 4.636 10 C 0.109 3.891 11 N -0.623 5.623 12 C 0.582 3.418 13 O -0.524 6.524 14 C -0.124 4.124 15 C -0.235 4.235 16 C -0.100 4.100 17 C -0.209 4.209 18 C 0.101 3.899 19 C -0.461 4.461 20 H 0.080 0.920 21 C 0.072 3.928 22 N -0.790 5.790 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.081 4.081 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.284 0.716 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 13.476 7.433 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.100 0.900 4 C -0.166 4.166 5 C -0.724 4.724 6 S 2.598 3.402 7 O -0.948 6.948 8 O -0.906 6.906 9 C -0.765 4.765 10 C -0.015 4.015 11 N -0.358 5.358 12 C 0.375 3.625 13 O -0.400 6.400 14 C -0.127 4.127 15 C -0.255 4.255 16 C -0.118 4.118 17 C -0.229 4.229 18 C 0.099 3.901 19 C -0.491 4.491 20 H 0.098 0.902 21 C -0.147 4.147 22 N -0.414 5.414 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.101 4.101 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.817 12.483 7.948 15.563 hybrid contribution -0.426 0.251 0.049 0.497 sum 4.391 12.734 7.998 15.665 Atomic orbital electron populations 1.22282 0.92931 1.05146 1.01829 1.21069 0.96750 0.95085 0.84028 0.90024 1.20531 0.92482 1.04238 0.99311 1.28993 1.12765 1.12358 1.18303 1.08123 0.76238 0.77650 0.78232 1.93580 1.34870 1.87225 1.79126 1.93677 1.82800 1.34724 1.79370 1.30753 1.08646 1.18125 1.19008 1.21944 0.83094 1.03110 0.93379 1.47671 1.28669 1.30573 1.28919 1.18819 0.80794 0.77527 0.85382 1.90630 1.29803 1.61010 1.58544 1.19389 1.04840 0.95657 0.92821 1.20815 1.10188 0.98269 0.96200 1.20453 1.00448 0.95100 0.95845 1.21150 1.09669 0.93378 0.98681 1.17598 0.89381 0.93315 0.89819 1.19542 1.10758 0.93841 1.24921 0.90210 1.25937 0.94631 1.00953 0.93141 1.69759 1.08034 1.38041 1.25613 0.86306 0.78606 0.82129 0.79323 1.18786 1.20282 1.19041 1.21578 0.98932 0.91998 0.97608 0.92833 0.92304 0.88188 0.88846 0.89313 0.85811 0.84948 0.85307 0.83319 0.90353 0.84905 0.87652 0.88886 0.88634 0.90490 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.04 37.16 0.30 -1.90 16 2 C 0.13 1.65 2.40 -68.23 -0.16 1.49 16 3 H 0.08 0.70 7.63 -51.93 -0.40 0.30 16 4 C -0.13 -1.45 4.64 -29.52 -0.14 -1.59 16 5 C -0.60 -5.43 5.61 33.73 0.19 -5.24 16 6 S 2.42 29.80 5.12 -107.50 -0.55 29.25 16 7 O -0.95 -13.92 18.09 -57.83 -1.05 -14.97 16 8 O -0.91 -16.08 16.53 -57.83 -0.96 -17.04 16 9 C -0.64 -5.87 5.87 37.53 0.22 -5.65 16 10 C 0.11 1.38 3.88 -3.78 -0.01 1.37 16 11 N -0.62 -9.61 1.95 -167.46 -0.33 -9.94 16 12 C 0.58 12.15 6.81 -12.31 -0.08 12.06 16 13 O -0.52 -12.14 13.30 5.32 0.07 -12.07 16 14 C -0.12 -2.87 5.39 -105.04 -0.57 -3.44 16 15 C -0.24 -4.76 7.42 -38.92 -0.29 -5.05 16 16 C -0.10 -2.08 10.01 -39.73 -0.40 -2.47 16 17 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 18 C 0.10 2.68 5.54 -106.87 -0.59 2.09 16 19 C -0.46 -12.20 9.06 -37.73 -0.34 -12.55 16 20 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 21 C 0.07 1.83 5.23 -17.34 -0.09 1.74 16 22 N -0.79 -21.10 10.92 55.55 0.61 -20.50 16 23 Si 0.91 19.07 29.58 -169.99 -5.03 14.04 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.08 -2.16 8.19 -38.44 -0.31 -2.47 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.10 1.64 5.82 -51.93 -0.30 1.34 16 31 H 0.09 1.40 7.24 -51.92 -0.38 1.03 16 32 H 0.09 0.84 7.96 -51.93 -0.41 0.42 16 33 H 0.12 0.68 8.08 -51.91 -0.42 0.26 16 34 H 0.13 1.03 8.14 -51.91 -0.42 0.61 16 35 H 0.13 0.70 7.93 -51.81 -0.41 0.29 16 36 H 0.15 1.10 8.14 -51.81 -0.42 0.68 16 37 H 0.08 0.82 7.37 -51.93 -0.38 0.43 16 38 H 0.13 2.03 4.49 -51.93 -0.23 1.80 16 39 H 0.11 1.73 4.88 -52.49 -0.26 1.47 16 40 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 42 H 0.28 7.01 8.30 -40.82 -0.34 6.68 16 43 H 0.13 3.79 6.11 -52.48 -0.32 3.47 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -34.26 347.02 -10.26 -44.52 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.59 Total: 8.38 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -2.66 Total: -26.91 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.28 Total: -30.43 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.93 Total: -44.08 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: 29.80 SS G_CDS: -0.55 Total: 29.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.26 -10.26 -44.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357159625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.056 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds