Wall clock time and date at job start Tue Mar 31 2020 20:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.41151 * 2 1 4 4 C 1.54218 * 109.44051 * 119.91327 * 2 1 3 5 5 C 1.45742 * 112.99962 * 199.56413 * 4 2 1 6 6 S 1.81923 * 113.30153 * 294.35432 * 5 4 2 7 7 O 1.42103 * 108.54169 * 189.97116 * 6 5 4 8 8 O 1.42097 * 108.54684 * 320.91113 * 6 5 4 9 9 C 1.79953 * 102.16904 * 75.42075 * 6 5 4 10 10 C 1.53724 * 110.87163 * 275.57093 * 9 6 5 11 11 N 1.44743 * 109.44158 * 240.09165 * 2 1 3 12 12 C 1.34779 * 119.59118 * 322.26963 * 11 2 1 13 13 O 1.21558 * 119.99697 * 354.07986 * 12 11 2 14 14 C 1.47884 * 120.00732 * 174.08916 * 12 11 2 15 15 C 1.39919 * 120.01984 * 332.17616 * 14 12 11 16 16 C 1.38331 * 120.35714 * 179.74696 * 15 14 12 17 17 C 1.37748 * 120.40951 * 0.55563 * 16 15 14 18 18 C 1.40746 * 120.04368 * 359.70057 * 17 16 15 19 19 C 1.41435 * 120.18186 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00074 * 29.08597 * 19 18 17 21 21 C 1.39938 * 120.00169 * 209.09410 * 19 18 17 22 22 N 1.30825 * 119.99961 * 11.89054 * 21 19 18 23 23 Si 1.86800 * 120.00279 * 191.89096 * 21 19 18 24 24 H 1.48506 * 109.46946 * 59.99749 * 23 21 19 25 25 H 1.48498 * 109.47185 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46897 * 300.00326 * 23 21 19 27 27 C 1.38989 * 120.03180 * 152.45406 * 14 12 11 28 28 H 1.08996 * 109.47241 * 312.49810 * 1 2 3 29 29 H 1.09000 * 109.46908 * 72.49819 * 1 2 3 30 30 H 1.08998 * 109.47327 * 192.49230 * 1 2 3 31 31 H 1.09008 * 108.77429 * 78.66264 * 4 2 1 32 32 H 1.08997 * 108.77587 * 320.48002 * 4 2 1 33 33 H 1.08999 * 108.71533 * 55.34432 * 5 4 2 34 34 H 1.09005 * 108.71167 * 173.36918 * 5 4 2 35 35 H 1.09006 * 109.19360 * 35.93342 * 9 6 5 36 36 H 1.08994 * 109.19913 * 155.20625 * 9 6 5 37 37 H 1.09002 * 108.34006 * 164.59430 * 10 9 6 38 38 H 1.09000 * 108.34037 * 281.81590 * 10 9 6 39 39 H 1.08001 * 119.82183 * 0.02562 * 15 14 12 40 40 H 1.08000 * 119.79228 * 180.26114 * 16 15 14 41 41 H 1.08001 * 119.98069 * 179.72502 * 17 16 15 42 42 H 0.97001 * 120.00405 * 180.02562 * 22 21 19 43 43 H 1.08011 * 120.19832 * 359.95610 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0433 -0.7252 1.2605 5 6 3.4249 -0.3938 1.5853 6 16 4.6158 -0.9703 0.3367 7 8 5.9288 -0.8061 0.8549 8 8 4.2063 -2.2517 -0.1208 9 6 4.3736 0.2159 -0.9947 10 6 3.1980 -0.2016 -1.8929 11 7 2.0118 -0.6806 -1.1831 12 6 1.3592 -1.7690 -1.6370 13 8 0.4389 -2.2372 -0.9956 14 6 1.7628 -2.3938 -2.9151 15 6 2.3590 -1.6186 -3.9158 16 6 2.7440 -2.1969 -5.1120 17 6 2.5348 -3.5398 -5.3364 18 6 1.9317 -4.3346 -4.3437 19 6 1.7160 -5.7138 -4.5708 20 1 2.3758 -6.2628 -5.2263 21 6 0.6476 -6.3671 -3.9463 22 7 -0.2828 -5.6715 -3.3447 23 14 0.5499 -8.2324 -3.9717 24 1 1.7529 -8.8001 -3.3115 25 1 -0.6677 -8.6742 -3.2455 26 1 0.4873 -8.7056 -5.3779 27 6 1.5451 -3.7504 -3.1256 28 1 -0.3633 0.6942 0.7577 29 1 -0.3633 0.3091 -0.9801 30 1 -0.3634 -1.0033 0.2223 31 1 1.9687 -1.8010 1.1012 32 1 1.4094 -0.4531 2.1044 33 1 3.5122 0.6887 1.6786 34 1 3.6769 -0.8464 2.5444 35 1 4.1674 1.1972 -0.5673 36 1 5.2815 0.2711 -1.5951 37 1 2.9104 0.6555 -2.5019 38 1 3.5396 -0.9941 -2.5587 39 1 2.5235 -0.5639 -3.7517 40 1 3.2071 -1.5908 -5.8765 41 1 2.8341 -3.9832 -6.2746 42 1 -1.0232 -6.1243 -2.9114 43 1 1.0818 -4.3518 -2.3573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357159625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:40 Heat of formation + Delta-G solvation = -80.936438 kcal Electronic energy + Delta-G solvation = -28564.517243 eV Core-core repulsion = 24701.869389 eV Total energy + Delta-G solvation = -3862.647855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69985 -39.13057 -38.13722 -37.50877 -37.00793 -35.96068 -35.08595 -32.60549 -32.04352 -31.31841 -30.20892 -27.37610 -25.48845 -25.05817 -24.33279 -22.68165 -22.35300 -20.23984 -19.70124 -19.07416 -18.28540 -17.78866 -17.32749 -17.21008 -16.95290 -16.63562 -16.23885 -16.04539 -15.55665 -15.18772 -14.97801 -14.82043 -14.53211 -14.36704 -14.16082 -13.93118 -13.69403 -13.49893 -13.26634 -13.11108 -13.00089 -12.89133 -12.86884 -12.79572 -12.52783 -12.45773 -12.40863 -12.13675 -11.96493 -11.67709 -11.60558 -11.37935 -11.13229 -11.06291 -10.27486 -9.74059 -9.37855 -9.26813 -8.59581 -6.37732 -0.92040 0.49246 1.03554 1.34325 1.46780 1.48279 1.78928 1.94889 2.15582 2.20805 2.78322 2.80039 2.92626 3.48068 3.57424 3.68414 3.76686 3.88504 4.04373 4.13502 4.25651 4.36745 4.43969 4.51143 4.56466 4.64913 4.74356 4.80378 4.87467 4.91166 4.92289 4.97151 5.10696 5.19918 5.24222 5.32806 5.45289 5.55782 5.81538 5.87946 5.96582 6.07330 6.30058 6.38173 6.64839 6.91135 6.97812 7.33951 8.36408 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.004076 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.618394 B = 6867.201569 C = 7013.162760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 H 0.147 0.853 4 C -0.126 4.126 5 C -0.576 4.576 6 S 2.392 3.608 7 O -0.986 6.986 8 O -0.986 6.986 9 C -0.610 4.610 10 C 0.091 3.909 11 N -0.610 5.610 12 C 0.573 3.427 13 O -0.564 6.564 14 C -0.138 4.138 15 C -0.206 4.206 16 C -0.100 4.100 17 C -0.216 4.216 18 C 0.065 3.935 19 C -0.503 4.503 20 H 0.081 0.919 21 C 0.026 3.974 22 N -0.834 5.834 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.252 1.252 27 C -0.124 4.124 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.183 0.817 34 H 0.145 0.855 35 H 0.189 0.811 36 H 0.173 0.827 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.284 0.716 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 18.676 7.655 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.164 0.836 4 C -0.166 4.166 5 C -0.707 4.707 6 S 2.580 3.420 7 O -0.983 6.983 8 O -0.983 6.983 9 C -0.742 4.742 10 C -0.031 4.031 11 N -0.343 5.343 12 C 0.365 3.635 13 O -0.443 6.443 14 C -0.141 4.141 15 C -0.225 4.225 16 C -0.118 4.118 17 C -0.236 4.236 18 C 0.063 3.937 19 C -0.533 4.533 20 H 0.099 0.901 21 C -0.187 4.187 22 N -0.460 5.460 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.175 1.175 27 C -0.144 4.144 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.201 0.799 34 H 0.163 0.837 35 H 0.207 0.793 36 H 0.191 0.809 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.361 17.690 8.169 20.497 hybrid contribution -0.815 -1.049 0.025 1.329 sum 5.546 16.641 8.194 19.360 Atomic orbital electron populations 1.22204 0.94178 1.03492 1.02189 1.21556 0.96028 0.97680 0.82534 0.83593 1.20513 0.94602 1.01209 1.00229 1.28762 1.09219 1.15992 1.16768 1.08372 0.76258 0.77642 0.79742 1.93536 1.36989 1.87686 1.80063 1.93616 1.83705 1.39868 1.81106 1.30538 1.07988 1.18871 1.16821 1.22155 0.83117 1.03476 0.94395 1.47581 1.28583 1.28595 1.29577 1.18619 0.81029 0.79014 0.84828 1.90631 1.31866 1.62575 1.59269 1.19848 1.04185 0.94879 0.95195 1.21446 1.06260 1.00369 0.94466 1.20988 0.99486 0.94254 0.97078 1.21458 1.08859 0.94868 0.98416 1.17951 0.90828 0.94192 0.90701 1.19818 1.11939 0.94807 1.26755 0.90090 1.26826 0.93813 1.05767 0.92339 1.69891 1.08918 1.39837 1.27403 0.85247 0.78523 0.75993 0.79910 1.18742 1.19630 1.17532 1.21355 1.01927 0.93818 0.97342 0.88969 0.93676 0.92549 0.93971 0.86528 0.79916 0.83684 0.79314 0.80895 0.85784 0.88093 0.82487 0.83969 0.87543 0.90596 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 8.04 71.98 0.58 -3.44 16 2 C 0.12 2.53 2.40 45.73 0.11 2.64 16 3 H 0.15 1.20 7.63 -2.39 -0.02 1.19 16 4 C -0.13 -2.56 4.64 28.78 0.13 -2.43 16 5 C -0.58 -7.98 5.61 69.76 0.39 -7.58 16 6 S 2.39 54.07 5.12 -56.49 -0.29 53.78 16 7 O -0.99 -27.33 18.09 -127.37 -2.30 -29.64 16 8 O -0.99 -36.74 16.53 -127.37 -2.11 -38.84 16 9 C -0.61 -7.52 5.87 72.23 0.42 -7.09 16 10 C 0.09 1.87 3.88 86.66 0.34 2.20 16 11 N -0.61 -17.31 1.95 -802.00 -1.57 -18.88 16 12 C 0.57 24.68 6.81 86.80 0.59 25.28 16 13 O -0.56 -28.26 13.30 -3.90 -0.05 -28.31 16 14 C -0.14 -6.63 5.39 -20.14 -0.11 -6.74 16 15 C -0.21 -7.96 7.42 22.70 0.17 -7.80 16 16 C -0.10 -3.94 10.01 22.18 0.22 -3.72 16 17 C -0.22 -10.37 9.78 22.77 0.22 -10.15 16 18 C 0.07 3.70 5.54 -21.32 -0.12 3.59 16 19 C -0.50 -28.75 9.06 23.47 0.21 -28.54 16 20 H 0.08 4.36 7.87 -2.91 -0.02 4.34 16 21 C 0.03 1.42 5.23 85.25 0.45 1.87 16 22 N -0.83 -48.86 10.92 21.82 0.24 -48.62 16 23 Si 0.98 41.83 29.58 68.60 2.03 43.85 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 27 C -0.12 -7.17 8.19 23.01 0.19 -6.99 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.06 1.91 5.82 -2.39 -0.01 1.90 16 31 H 0.04 1.32 7.24 -2.38 -0.02 1.30 16 32 H 0.12 1.76 7.96 -2.39 -0.02 1.74 16 33 H 0.18 0.45 8.08 -2.40 -0.02 0.43 16 34 H 0.15 1.77 8.14 -2.40 -0.02 1.75 16 35 H 0.19 0.15 7.93 -2.46 -0.02 0.13 16 36 H 0.17 1.49 8.14 -2.47 -0.02 1.47 16 37 H 0.12 1.56 7.37 -2.39 -0.02 1.54 16 38 H 0.10 2.76 4.49 -2.39 -0.01 2.75 16 39 H 0.16 4.34 4.88 -2.91 -0.01 4.32 16 40 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 41 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 42 H 0.28 15.40 8.30 -92.71 -0.77 14.63 16 43 H 0.09 5.84 6.11 -2.91 -0.02 5.82 16 Total: -1.00 -91.45 347.02 0.78 -90.67 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 1.04 Total: 24.89 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 3.80 Total: -48.89 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -1.33 Total: -67.50 kcal Atomic # 8 Polarization: -92.33 SS G_CDS: -4.46 Total: -96.79 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.29 Total: 53.78 kcal Total: -91.45 0.78 -90.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357159625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.731 kcal (2) G-P(sol) polarization free energy of solvation -91.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds