Wall clock time and date at job start Tue Mar 31 2020 19:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47550 * 2 1 4 4 C 1.35984 * 117.00297 * 179.97438 * 3 2 1 5 5 C 1.38718 * 120.06498 * 0.02562 * 4 3 2 6 6 C 1.37945 * 119.89755 * 179.90498 * 5 4 3 7 7 C 1.39130 * 120.29382 * 359.96996 * 6 5 4 8 8 C 1.38357 * 119.78476 * 0.15766 * 7 6 5 9 9 C 1.38506 * 119.87783 * 359.81413 * 8 7 6 10 10 C 1.50776 * 121.40591 * 179.77312 * 8 7 6 11 11 H 1.09002 * 109.43261 * 257.82981 * 10 8 7 12 12 N 1.46499 * 109.43633 * 137.92142 * 10 8 7 13 13 C 1.34778 * 120.00278 * 84.99430 * 12 10 8 14 14 O 1.21278 * 119.99748 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00209 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31634 * 119.99756 * 0.27728 * 19 17 16 21 21 Si 1.86803 * 120.00005 * 180.27923 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00123 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00074 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99873 * 21 19 17 25 25 C 1.53064 * 109.69693 * 17.84539 * 10 8 7 26 26 C 1.53406 * 108.30279 * 311.78210 * 25 10 8 27 27 O 1.35945 * 118.43640 * 180.44802 * 7 6 5 28 28 H 1.09003 * 109.46563 * 299.99999 * 1 2 3 29 29 H 1.08995 * 109.46851 * 59.99494 * 1 2 3 30 30 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47295 * 239.99926 * 2 1 3 32 32 H 1.09003 * 109.47388 * 120.00222 * 2 1 3 33 33 H 1.08003 * 120.05213 * 359.92952 * 5 4 3 34 34 H 1.07997 * 119.85507 * 179.97438 * 6 5 4 35 35 H 1.07993 * 119.85950 * 180.09971 * 9 8 7 36 36 H 0.97000 * 119.99972 * 264.99785 * 12 10 8 37 37 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 38 38 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 39 39 H 0.97000 * 119.99219 * 179.97438 * 20 19 17 40 40 H 1.09009 * 109.69055 * 71.48280 * 25 10 8 41 41 H 1.08997 * 109.69733 * 192.07459 * 25 10 8 42 42 H 1.08997 * 109.68138 * 305.00288 * 26 25 10 43 43 H 1.08997 * 109.71849 * 184.45782 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.2008 0.4262 0.0005 6 6 5.5678 0.6109 -0.0009 7 6 6.1025 1.8954 -0.0030 8 6 5.2580 2.9914 -0.0003 9 6 3.8855 2.8049 0.0006 10 6 5.7978 4.3992 0.0027 11 1 5.7256 4.8131 1.0085 12 7 5.0146 5.2235 -0.9210 13 6 3.8692 5.7992 -0.5050 14 8 3.4870 5.6351 0.6342 15 6 3.0633 6.6467 -1.4554 16 16 1.5932 7.2741 -0.6061 17 6 0.8592 8.2031 -1.9110 18 1 1.3367 8.2453 -2.8788 19 6 -0.3360 8.8757 -1.6969 20 7 -0.9182 8.8239 -0.5174 21 14 -1.1182 9.8543 -3.0825 22 1 -2.0372 8.9767 -3.8509 23 1 -1.8820 10.9938 -2.5139 24 1 -0.0572 10.3704 -3.9843 25 6 7.2632 4.3908 -0.4393 26 6 7.9990 3.3023 0.3526 27 8 7.4548 2.0337 -0.0137 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7900 -0.5726 0.0012 34 1 6.2260 -0.2453 -0.0005 35 1 3.2267 3.6605 0.0010 36 1 5.3204 5.3550 -1.8321 37 1 2.7594 6.0440 -2.3113 38 1 3.6698 7.4849 -1.7983 39 1 -1.7532 9.2943 -0.3678 40 1 7.3238 4.1737 -1.5059 41 1 7.7140 5.3619 -0.2353 42 1 7.8588 3.4674 1.4208 43 1 9.0621 3.3287 0.1134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185641282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:01 Heat of formation + Delta-G solvation = -87.536992 kcal Electronic energy + Delta-G solvation = -26626.773506 eV Core-core repulsion = 22763.839430 eV Total energy + Delta-G solvation = -3862.934076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12639 -39.43980 -39.02905 -36.52105 -35.44056 -32.42148 -32.24109 -31.83336 -30.68504 -29.41037 -28.74901 -25.56377 -25.08092 -24.36827 -22.86704 -22.30824 -20.48781 -20.21758 -18.13595 -17.94731 -17.64889 -16.86994 -16.34101 -16.15361 -15.98649 -15.60736 -15.14787 -14.79741 -14.77383 -14.25780 -14.03687 -13.60868 -13.58059 -13.45853 -13.21305 -13.02554 -12.85590 -12.67037 -12.55757 -12.30678 -12.03786 -11.67504 -11.53521 -11.24210 -11.14495 -11.05654 -11.01682 -10.78507 -10.68356 -10.30623 -9.80906 -9.47846 -9.08664 -9.03777 -8.87527 -8.23085 -7.74121 -6.48776 -6.20831 -3.91149 1.16260 1.43515 2.95443 3.00560 3.12197 3.23033 3.25949 3.28374 3.31962 3.60281 3.79563 4.20973 4.35458 4.45885 4.55172 4.74309 4.82385 4.83378 4.88350 5.01245 5.03242 5.13974 5.14499 5.18187 5.25877 5.34159 5.44237 5.45443 5.61104 5.68510 5.71906 5.78898 5.84453 5.88071 6.00385 6.01520 6.13691 6.31206 6.42159 6.49549 6.58578 7.24134 7.52240 7.60266 7.63802 8.36008 8.53910 9.24580 10.86560 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.003327 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.408438 B = 8413.884179 C =10531.776864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.056 3.944 3 O -0.309 6.309 4 C 0.100 3.900 5 C -0.174 4.174 6 C -0.116 4.116 7 C 0.097 3.903 8 C -0.134 4.134 9 C -0.099 4.099 10 C 0.191 3.809 11 H 0.103 0.897 12 N -0.730 5.730 13 C 0.533 3.467 14 O -0.510 6.510 15 C -0.155 4.155 16 S -0.056 6.056 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.165 4.165 26 C 0.067 3.933 27 O -0.318 6.318 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.777 -17.253 -0.640 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.224 6.224 4 C 0.055 3.945 5 C -0.193 4.193 6 C -0.135 4.135 7 C 0.052 3.948 8 C -0.136 4.136 9 C -0.117 4.117 10 C 0.086 3.914 11 H 0.121 0.879 12 N -0.383 5.383 13 C 0.320 3.680 14 O -0.385 6.385 15 C -0.305 4.305 16 S 0.170 5.830 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.203 4.203 26 C -0.009 4.009 27 O -0.233 6.233 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.952 -17.439 1.335 23.010 hybrid contribution 0.031 0.814 -2.618 2.742 sum 14.983 -16.625 -1.283 22.417 Atomic orbital electron populations 1.21778 0.92673 1.02540 1.04096 1.22748 0.96097 0.82252 1.00864 1.86193 1.18585 1.28729 1.88847 1.18845 0.82666 0.93800 0.99227 1.21017 0.93213 0.98180 1.06916 1.20252 0.94295 0.94868 1.04087 1.18513 0.82070 0.93088 1.01111 1.20012 0.93185 0.94773 1.05670 1.20641 0.94350 0.96135 1.00603 1.19584 0.89198 0.86735 0.95881 0.87882 1.46062 1.24842 1.52059 1.15377 1.20379 0.80076 0.78839 0.88714 1.90720 1.68352 1.59964 1.19419 1.23548 1.03411 1.01412 1.02140 1.85406 1.17631 1.62501 1.17445 1.22870 1.10794 1.35766 0.99000 0.90946 1.24983 0.95965 0.96142 0.96422 1.70021 1.17742 1.40996 1.21488 0.86179 0.79149 0.79224 0.81018 1.20265 1.20756 1.19698 1.22503 0.94726 1.01088 1.02019 1.22902 0.98097 0.80959 0.98927 1.85979 1.18011 1.34696 1.84575 0.91254 0.91257 0.90607 0.92361 0.92336 0.85076 0.85115 0.83424 0.76512 0.89131 0.89123 0.92194 0.89749 0.88851 0.91492 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 2 C 0.06 0.60 5.46 37.16 0.20 0.80 16 3 O -0.31 -4.78 10.14 -19.69 -0.20 -4.98 16 4 C 0.10 1.51 6.68 -39.30 -0.26 1.25 16 5 C -0.17 -2.12 9.03 -39.51 -0.36 -2.47 16 6 C -0.12 -1.37 9.93 -39.36 -0.39 -1.76 16 7 C 0.10 1.24 6.47 -39.21 -0.25 0.98 16 8 C -0.13 -1.88 5.56 -104.44 -0.58 -2.46 16 9 C -0.10 -1.63 9.01 -39.38 -0.35 -1.98 16 10 C 0.19 2.38 2.70 -69.01 -0.19 2.20 16 11 H 0.10 1.44 7.57 -51.93 -0.39 1.04 16 12 N -0.73 -9.82 4.86 -54.86 -0.27 -10.09 16 13 C 0.53 9.78 6.40 -10.99 -0.07 9.71 16 14 O -0.51 -11.26 13.80 5.56 0.08 -11.18 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.17 -1.39 5.67 -26.49 -0.15 -1.54 16 26 C 0.07 0.53 7.03 37.37 0.26 0.80 16 27 O -0.32 -3.53 10.27 -19.57 -0.20 -3.73 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 32 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.13 1.23 6.31 -52.48 -0.33 0.90 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.15 2.89 4.70 -52.49 -0.25 2.64 16 36 H 0.40 4.24 8.58 -40.82 -0.35 3.89 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 0.67 8.11 -51.92 -0.42 0.25 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -35.45 369.02 -8.76 -44.21 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.89 Total: 4.42 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.34 Total: -11.43 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.47 Total: -35.55 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.32 Total: -19.90 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.45 -8.76 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185641282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.331 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds